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Information for RPM R-ape-5.6.2-1.fc37.riscv64.rpm

ID821987
NameR-ape
Version5.6.2
Release1.fc37
Epoch
Archriscv64
SummaryAnalyses of Phylogenetics and Evolution
DescriptionFunctions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
Build Time2022-10-10 00:07:11 GMT
Size3.23 MB
d45a74b7b17f1e30e6f6c0339d67012c
LicenseGPLv2 or GPLv3
Buildrootf37-build-644585-72220
Provides
R(ape) = 5.6.2
R-ape = 5.6.2-1.fc37
R-ape(riscv-64) = 5.6.2-1.fc37
Obsoletes No Obsoletes
Conflicts No Conflicts
Requires
R(ABI) = 4.2
R(Rcpp) >= 0.12.0
R(graphics)
R(lattice)
R(methods)
R(nlme)
R(parallel)
R(stats)
R(tools)
R(utils)
R-core >= 3.2.0
ld-linux-riscv64-lp64d.so.1()(64bit)
ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit)
libR.so()(64bit)
libc.so.6()(64bit)
libc.so.6(GLIBC_2.27)(64bit)
libflexiblas.so.3()(64bit)
libgcc_s.so.1()(64bit)
libgcc_s.so.1(GCC_3.0)(64bit)
libgcc_s.so.1(GCC_3.4)(64bit)
libm.so.6()(64bit)
libm.so.6(GLIBC_2.27)(64bit)
libstdc++.so.6()(64bit)
libstdc++.so.6(CXXABI_1.3)(64bit)
libstdc++.so.6(CXXABI_1.3.9)(64bit)
libstdc++.so.6(GLIBCXX_3.4)(64bit)
libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
libstdc++.so.6(GLIBCXX_3.4.29)(64bit)
libstdc++.so.6(GLIBCXX_3.4.30)(64bit)
libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(FileDigests) <= 4.6.0-1
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
rpmlib(PayloadIsZstd) <= 5.4.18-1
rtld(GNU_HASH)
Recommends No Recommends
Suggests
R(expm)
R(gee)
R(igraph)
R(phangorn)
Supplements No Supplements
Enhances No Enhances
Files
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/usr/lib/.build-id0.00 B
/usr/lib/.build-id/7f0.00 B
/usr/lib/.build-id/7f/cccf20e9753b9854920f95dac07b6f5bde0e0847.00 B
/usr/lib64/R/library/ape0.00 B
/usr/lib64/R/library/ape/CITATION654.00 B
/usr/lib64/R/library/ape/DESCRIPTION6.07 KB
/usr/lib64/R/library/ape/INDEX11.52 KB
/usr/lib64/R/library/ape/Meta0.00 B
/usr/lib64/R/library/ape/Meta/Rd.rds7.97 KB
/usr/lib64/R/library/ape/Meta/data.rds483.00 B
/usr/lib64/R/library/ape/Meta/features.rds131.00 B
/usr/lib64/R/library/ape/Meta/hsearch.rds7.64 KB
/usr/lib64/R/library/ape/Meta/links.rds4.25 KB
/usr/lib64/R/library/ape/Meta/nsInfo.rds3.76 KB
/usr/lib64/R/library/ape/Meta/package.rds2.49 KB
/usr/lib64/R/library/ape/Meta/vignette.rds260.00 B
/usr/lib64/R/library/ape/NAMESPACE11.10 KB
/usr/lib64/R/library/ape/NEWS37.00 B
/usr/lib64/R/library/ape/R0.00 B
/usr/lib64/R/library/ape/R/ape1.03 KB
/usr/lib64/R/library/ape/R/ape.rdb1.02 MB
/usr/lib64/R/library/ape/R/ape.rdx6.66 KB
/usr/lib64/R/library/ape/data0.00 B
/usr/lib64/R/library/ape/data/HP.links.rda412.00 B
/usr/lib64/R/library/ape/data/bird.families.rda2.45 KB
/usr/lib64/R/library/ape/data/bird.orders.rda567.00 B
/usr/lib64/R/library/ape/data/carnivora.csv.gz3.46 KB
/usr/lib64/R/library/ape/data/chiroptera.rda11.69 KB
/usr/lib64/R/library/ape/data/cynipids.rda721.00 B
/usr/lib64/R/library/ape/data/gopher.D.rda1.23 KB
/usr/lib64/R/library/ape/data/hivtree.newick.rda2.14 KB
/usr/lib64/R/library/ape/data/hivtree.table.txt.gz1.01 KB
/usr/lib64/R/library/ape/data/lice.D.rda1.51 KB
/usr/lib64/R/library/ape/data/lmorigin.ex1.rda979.00 B
/usr/lib64/R/library/ape/data/lmorigin.ex2.rda455.00 B
/usr/lib64/R/library/ape/data/mat3.RData714.00 B
/usr/lib64/R/library/ape/data/mat5M3ID.RData48.55 KB
/usr/lib64/R/library/ape/data/mat5Mrand.RData48.39 KB
/usr/lib64/R/library/ape/data/woodmouse.rda1.13 KB
/usr/lib64/R/library/ape/doc0.00 B
/usr/lib64/R/library/ape/doc/DrawingPhylogenies.R15.08 KB
/usr/lib64/R/library/ape/doc/DrawingPhylogenies.Rnw41.29 KB
/usr/lib64/R/library/ape/doc/DrawingPhylogenies.pdf740.23 KB
/usr/lib64/R/library/ape/doc/MoranI.R2.70 KB
/usr/lib64/R/library/ape/doc/MoranI.Rnw12.79 KB
/usr/lib64/R/library/ape/doc/MoranI.pdf210.19 KB
/usr/lib64/R/library/ape/doc/RandomTopologies.R8.03 KB
/usr/lib64/R/library/ape/doc/RandomTopologies.Rnw21.16 KB
/usr/lib64/R/library/ape/doc/RandomTopologies.pdf242.01 KB
/usr/lib64/R/library/ape/doc/index.html2.38 KB
Component of No Buildroots