R-ape-5.6.2-1.fc37 | Build Info

Information for build R-ape-5.6.2-1.fc37

206294

Package Name

R-ape

Version

5.6.2

Release

1.fc37

Epoch

Source

git+https://src.fedoraproject.org/rpms/R-ape.git#ecce5f1367150f57bfd50afb813d74ab6567077c

Summary

Analyses of Phylogenetics and Evolution

Description

Functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.

Built by

davidlt

State

complete

Volume

DEFAULT

Started

Sun, 09 Oct 2022 21:24:47 UTC

Completed

Mon, 10 Oct 2022 00:31:51 UTC

Task

build (f37, /rpms/R-ape.git:ecce5f1367150f57bfd50afb813d74ab6567077c)

Extra

{'source': {'original_url': 'git+https://src.fedoraproject.org/rpms/R-ape.git#ecce5f1367150f57bfd50afb813d74ab6567077c'}}

Tags

f37

f38

RPMs

src
	R-ape-5.6.2-1.fc37.src.rpm (info) (download)
riscv64
	R-ape-5.6.2-1.fc37.riscv64.rpm (info) (download)
	R-ape-debuginfo-5.6.2-1.fc37.riscv64.rpm (info) (download)
	R-ape-debugsource-5.6.2-1.fc37.riscv64.rpm (info) (download)

Logs

riscv64
	build.log
	hw_info.log
	mock_output.log
	root.log
	state.log

Changelog

* Fri Sep 02 2022 Tom Callaway <spot@fedoraproject.org> - 5.6.2-1 - update to 5.6-2 - rebuild for R 4.2.1 - bootstrap on * Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 5.5-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 5.5-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 5.5-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Thu Jun 17 2021 Tom Callaway <spot@fedoraproject.org> - 5.5-2 - bootstrap off, but rework check logic around missing phangorn * Tue Jun 15 2021 Tom Callaway <spot@fedoraproject.org> - 5.5-1 - update to 5.5 - bootstrap - Rebuilt for R 4.1.0 * Mon Jun 07 2021 Tom Callaway <spot@fedoraproject.org> - 5.4.1-3 - rebuild for R 4.1.0 * Mon Jan 25 2021 Fedora Release Engineering <releng@fedoraproject.org> - 5.4.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild

Main Site Links:

Information for build R-ape-5.6.2-1.fc37