Wed, 13 Nov 2024 00:17:13 UTC | login

Information for RPM bfast-0.7.0a-23.fc33.riscv64.rpm

ID569323
Namebfast
Version0.7.0a
Release23.fc33
Epoch
Archriscv64
SummaryBlat-like Fast Accurate Search Tool
Description BFAST facilitates the fast and accurate mapping of short reads to reference sequences. Some advantages of BFAST include: Speed: enables billions of short reads to be mapped quickly. Accuracy: A priori probabilities for mapping reads with defined set of variants. An easy way to measurably tune accuracy at the expense of speed. Specifically, BFAST was designed to facilitate whole-genome resequencing, where mapping billions of short reads with variants is of utmost importance. BFAST supports both Illumina and ABI SOLiD data, as well as any other Next-Generation Sequencing Technology (454, Helicos), with particular emphasis on sensitivity towards errors, SNPs and especially indels. Other algorithms take short-cuts by ignoring errors, certain types of variants (indels), and even require further alignment, all to be the "fastest" (but still not complete). BFAST is able to be tuned to find variants regardless of the error-rate, polymorphism rate, or other factors.
Build Time2020-03-28 11:18:00 GMT
Size764.41 KB
3219fe64493526ef2387377634a99a5b
LicenseGPLv2 and MIT
Buildrootf33-build-135590-41741
Provides
bfast = 0.7.0a-23.fc33
bfast(riscv-64) = 0.7.0a-23.fc33
Obsoletes No Obsoletes
Conflicts No Conflicts
Requires
/usr/bin/perl
ld-linux-riscv64-lp64d.so.1()(64bit)
ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit)
libbz2.so.1()(64bit)
libc.so.6()(64bit)
libc.so.6(GLIBC_2.27)(64bit)
libm.so.6()(64bit)
libm.so.6(GLIBC_2.27)(64bit)
libpthread.so.0()(64bit)
libpthread.so.0(GLIBC_2.27)(64bit)
libz.so.1()(64bit)
perl(Cwd)
perl(Data::Dumper)
perl(File::Path)
perl(Getopt::Long)
perl(Getopt::Std)
perl(Pod::Usage)
perl(XML::Simple)
perl(constant)
perl(strict)
perl(warnings)
rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(FileDigests) <= 4.6.0-1
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
rpmlib(PayloadIsZstd) <= 5.4.18-1
rtld(GNU_HASH)
Recommends No Recommends
Suggests No Suggests
Supplements No Supplements
Enhances No Enhances
Files
1 through 45 of 45
Name ascending sort Size
/usr/bin/balignmentscoredistribution123.00 KB
/usr/bin/balignsim180.23 KB
/usr/bin/bevalsim135.29 KB
/usr/bin/bfast271.48 KB
/usr/bin/bfast.resubmit.pl6.09 KB
/usr/bin/bfast.submit.pl49.55 KB
/usr/bin/bgeneratereads102.59 KB
/usr/bin/bindexdist110.70 KB
/usr/bin/bindexhist106.69 KB
/usr/bin/bmfmerge123.18 KB
/usr/bin/brepeat94.41 KB
/usr/bin/btestindexes116.91 KB
/usr/bin/ill2fastq.pl12.84 KB
/usr/bin/solid2fastq102.63 KB
/usr/lib/.build-id0.00 B
/usr/lib/.build-id/090.00 B
/usr/lib/.build-id/09/332e5994da158799b0842036544ee96bca658f28.00 B
/usr/lib/.build-id/0d0.00 B
/usr/lib/.build-id/0d/e0c3eeccfe0ca7ebe1e376411f8833ef31afed29.00 B
/usr/lib/.build-id/2a0.00 B
/usr/lib/.build-id/2a/ad6c516a64a719f955104e512ce1d8be8cf04227.00 B
/usr/lib/.build-id/3c0.00 B
/usr/lib/.build-id/3c/0a4482e3135d90007975f114c67fa9b7e4f78931.00 B
/usr/lib/.build-id/4b0.00 B
/usr/lib/.build-id/4b/495da8b8780880a81a3f6e478cf5244166e54c30.00 B
/usr/lib/.build-id/660.00 B
/usr/lib/.build-id/66/21ad702ca92808242636af19cf0d080cc8653125.00 B
/usr/lib/.build-id/b30.00 B
/usr/lib/.build-id/b3/473dbf2732ecc2050e296282b2be62bff4bd3228.00 B
/usr/lib/.build-id/bc0.00 B
/usr/lib/.build-id/bc/d41b37ef534876163a40e8794b583fca80fff532.00 B
/usr/lib/.build-id/d20.00 B
/usr/lib/.build-id/d2/f45e075b95f72250dd2af7d9ae0fe378bc3d6230.00 B
/usr/lib/.build-id/d40.00 B
/usr/lib/.build-id/d4/952cf79c278c5620545449cd809c229a6181fa47.00 B
/usr/lib/.build-id/f90.00 B
/usr/lib/.build-id/f9/e91e345fd910235bfba9e02cf3ffec8f9f0a6934.00 B
/usr/share/doc/bfast0.00 B
/usr/share/doc/bfast/AUTHORS102.00 B
/usr/share/doc/bfast/ChangeLog13.97 KB
/usr/share/doc/bfast/NEWS126.00 B
/usr/share/doc/bfast/README179.00 B
/usr/share/doc/bfast/bfast-book.pdf551.23 KB
/usr/share/licenses/bfast0.00 B
/usr/share/licenses/bfast/LICENSE17.57 KB
Component of No Buildroots