Tue, 21 May 2024 20:35:10 UTC | login

Information for RPM bfast-0.7.0a-14.fc28.riscv64.rpm

ID24496
Namebfast
Version0.7.0a
Release14.fc28
Epoch
Archriscv64
SummaryBlat-like Fast Accurate Search Tool
Description BFAST facilitates the fast and accurate mapping of short reads to reference sequences. Some advantages of BFAST include: Speed: enables billions of short reads to be mapped quickly. Accuracy: A priori probabilities for mapping reads with defined set of variants. An easy way to measurably tune accuracy at the expense of speed. Specifically, BFAST was designed to facilitate whole-genome resequencing, where mapping billions of short reads with variants is of utmost importance. BFAST supports both Illumina and ABI SOLiD data, as well as any other Next-Generation Sequencing Technology (454, Helicos), with particular emphasis on sensitivity towards errors, SNPs and especially indels. Other algorithms take short-cuts by ignoring errors, certain types of variants (indels), and even require further alignment, all to be the "fastest" (but still not complete). BFAST is able to be tuned to find variants regardless of the error-rate, polymorphism rate, or other factors.
Build Time2018-02-18 07:54:25 GMT
Size1.21 MB
827f1c4ad8b48fb42c6717253fbc911e
LicenseGPLv2 and MIT
Provides
bfast = 0.7.0a-14.fc28
bfast(riscv-64) = 0.7.0a-14.fc28
Obsoletes No Obsoletes
Conflicts No Conflicts
Requires
/usr/bin/perl
ld-linux-riscv64-lp64d.so.1()(64bit)
ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit)
libbz2.so.1()(64bit)
libc.so.6()(64bit)
libc.so.6(GLIBC_2.27)(64bit)
libm.so.6()(64bit)
libm.so.6(GLIBC_2.27)(64bit)
libpthread.so.0()(64bit)
libpthread.so.0(GLIBC_2.27)(64bit)
libz.so.1()(64bit)
perl(Cwd)
perl(Data::Dumper)
perl(File::Path)
perl(Getopt::Long)
perl(Getopt::Std)
perl(Pod::Usage)
perl(XML::Simple)
perl(constant)
perl(strict)
perl(warnings)
rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(FileDigests) <= 4.6.0-1
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
rpmlib(PayloadIsXz) <= 5.2-1
rtld(GNU_HASH)
Recommends No Recommends
Suggests No Suggests
Supplements No Supplements
Enhances No Enhances
Files
1 through 45 of 45
Name ascending sort Size
/usr/bin/balignmentscoredistribution517.80 KB
/usr/bin/balignsim811.55 KB
/usr/bin/bevalsim544.39 KB
/usr/bin/bfast1.18 MB
/usr/bin/bfast.resubmit.pl6.09 KB
/usr/bin/bfast.submit.pl49.55 KB
/usr/bin/bgeneratereads424.53 KB
/usr/bin/bindexdist458.41 KB
/usr/bin/bindexhist447.98 KB
/usr/bin/bmfmerge511.99 KB
/usr/bin/brepeat386.27 KB
/usr/bin/btestindexes463.17 KB
/usr/bin/ill2fastq.pl12.84 KB
/usr/bin/solid2fastq415.10 KB
/usr/lib/.build-id0.00 B
/usr/lib/.build-id/070.00 B
/usr/lib/.build-id/07/39f1c1d6acceaa9cde2836258905c357f0582d25.00 B
/usr/lib/.build-id/140.00 B
/usr/lib/.build-id/14/f889dade3e900522953a4b7675b9232679849c30.00 B
/usr/lib/.build-id/2e0.00 B
/usr/lib/.build-id/2e/0aa75e14b886669f9a582ed98521b9c88c3be347.00 B
/usr/lib/.build-id/500.00 B
/usr/lib/.build-id/50/36aff1594ef3c151b9e7cf833eb149c6d794e428.00 B
/usr/lib/.build-id/5c0.00 B
/usr/lib/.build-id/5c/781b21ac5363123c18d76bc63ac19da953a48b30.00 B
/usr/lib/.build-id/650.00 B
/usr/lib/.build-id/65/8cb7091e8ce76cc58a8624d139112d8792691931.00 B
/usr/lib/.build-id/7a0.00 B
/usr/lib/.build-id/7a/05dc873de7719c61791a66c7f037f7dd4da68e27.00 B
/usr/lib/.build-id/c10.00 B
/usr/lib/.build-id/c1/e20aa49030518f1a856faa988e600ed57fd4b328.00 B
/usr/lib/.build-id/d30.00 B
/usr/lib/.build-id/d3/3605e68745bab673395c749d00a39cf60ae3c234.00 B
/usr/lib/.build-id/eb0.00 B
/usr/lib/.build-id/eb/7d4df88b2be21760e692861bd1ac161cd5284229.00 B
/usr/lib/.build-id/f90.00 B
/usr/lib/.build-id/f9/90b3a006ef9f2283625210f3c3ef43b96b5d9c32.00 B
/usr/share/doc/bfast0.00 B
/usr/share/doc/bfast/AUTHORS102.00 B
/usr/share/doc/bfast/ChangeLog13.97 KB
/usr/share/doc/bfast/NEWS126.00 B
/usr/share/doc/bfast/README179.00 B
/usr/share/doc/bfast/bfast-book.pdf551.23 KB
/usr/share/licenses/bfast0.00 B
/usr/share/licenses/bfast/LICENSE17.57 KB
Component of No Buildroots