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Information for RPM R-ape-5.7.1-7.1.riscv64.fc41.riscv64.rpm

ID1429559
NameR-ape
Version5.7.1
Release7.1.riscv64.fc41
Epoch
Archriscv64
SummaryAnalyses of Phylogenetics and Evolution
DescriptionFunctions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
Build Time2024-08-13 04:00:15 GMT
Size3.02 MB
236c68fab5002af871e5f3aa64b95731
LicenseGPL-2.0-only OR GPL-3.0-only
Buildrootf41-build-840145-160563
Provides
R(ape) = 5.7.1
R-ape = 5.7.1-7.1.riscv64.fc41
R-ape(riscv-64) = 5.7.1-7.1.riscv64.fc41
Obsoletes No Obsoletes
Conflicts No Conflicts
Requires
R(ABI) = 4.4
R(Rcpp) >= 0.12.0
R(digest)
R(graphics)
R(lattice)
R(methods)
R(nlme)
R(parallel)
R(stats)
R(utils)
R-core >= 3.2.0
ld-linux-riscv64-lp64d.so.1()(64bit)
ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit)
libR.so()(64bit)
libc.so.6()(64bit)
libc.so.6(GLIBC_2.27)(64bit)
libflexiblas.so.3()(64bit)
libgcc_s.so.1()(64bit)
libgcc_s.so.1(GCC_3.0)(64bit)
libgcc_s.so.1(GCC_3.4)(64bit)
libm.so.6()(64bit)
libm.so.6(GLIBC_2.27)(64bit)
libstdc++.so.6()(64bit)
libstdc++.so.6(CXXABI_1.3)(64bit)
libstdc++.so.6(CXXABI_1.3.15)(64bit)
libstdc++.so.6(CXXABI_1.3.9)(64bit)
libstdc++.so.6(GLIBCXX_3.4)(64bit)
libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
libstdc++.so.6(GLIBCXX_3.4.29)(64bit)
libstdc++.so.6(GLIBCXX_3.4.30)(64bit)
libstdc++.so.6(GLIBCXX_3.4.32)(64bit)
libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(FileDigests) <= 4.6.0-1
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
rpmlib(PayloadIsZstd) <= 5.4.18-1
rtld(GNU_HASH)
Recommends No Recommends
Suggests
R(expm)
R(gee)
R(igraph)
R(phangorn)
Supplements No Supplements
Enhances No Enhances
Files
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/usr/lib/.build-id0.00 B
/usr/lib/.build-id/9b0.00 B
/usr/lib/.build-id/9b/63752b3663815a79dd88638ed2eeb18734821447.00 B
/usr/lib64/R/library/ape0.00 B
/usr/lib64/R/library/ape/CITATION589.00 B
/usr/lib64/R/library/ape/DESCRIPTION6.16 KB
/usr/lib64/R/library/ape/INDEX11.52 KB
/usr/lib64/R/library/ape/Meta0.00 B
/usr/lib64/R/library/ape/Meta/Rd.rds8.00 KB
/usr/lib64/R/library/ape/Meta/data.rds471.00 B
/usr/lib64/R/library/ape/Meta/features.rds126.00 B
/usr/lib64/R/library/ape/Meta/hsearch.rds7.86 KB
/usr/lib64/R/library/ape/Meta/links.rds4.28 KB
/usr/lib64/R/library/ape/Meta/nsInfo.rds3.81 KB
/usr/lib64/R/library/ape/Meta/package.rds2.51 KB
/usr/lib64/R/library/ape/Meta/vignette.rds260.00 B
/usr/lib64/R/library/ape/NAMESPACE11.37 KB
/usr/lib64/R/library/ape/NEWS93.00 B
/usr/lib64/R/library/ape/R0.00 B
/usr/lib64/R/library/ape/R/ape1.03 KB
/usr/lib64/R/library/ape/R/ape.rdb1.02 MB
/usr/lib64/R/library/ape/R/ape.rdx6.84 KB
/usr/lib64/R/library/ape/data0.00 B
/usr/lib64/R/library/ape/data/HP.links.rda412.00 B
/usr/lib64/R/library/ape/data/bird.families.rda2.45 KB
/usr/lib64/R/library/ape/data/bird.orders.rda567.00 B
/usr/lib64/R/library/ape/data/carnivora.csv.gz3.46 KB
/usr/lib64/R/library/ape/data/chiroptera.rda11.69 KB
/usr/lib64/R/library/ape/data/cynipids.rda721.00 B
/usr/lib64/R/library/ape/data/gopher.D.rda1.23 KB
/usr/lib64/R/library/ape/data/hivtree.newick.rda2.14 KB
/usr/lib64/R/library/ape/data/hivtree.table.txt.gz1.01 KB
/usr/lib64/R/library/ape/data/lice.D.rda1.51 KB
/usr/lib64/R/library/ape/data/lmorigin.ex1.rda979.00 B
/usr/lib64/R/library/ape/data/lmorigin.ex2.rda455.00 B
/usr/lib64/R/library/ape/data/mat3.RData714.00 B
/usr/lib64/R/library/ape/data/mat5M3ID.RData48.55 KB
/usr/lib64/R/library/ape/data/mat5Mrand.RData48.39 KB
/usr/lib64/R/library/ape/data/woodmouse.rda1.13 KB
/usr/lib64/R/library/ape/doc0.00 B
/usr/lib64/R/library/ape/doc/DrawingPhylogenies.R15.08 KB
/usr/lib64/R/library/ape/doc/DrawingPhylogenies.Rnw41.29 KB
/usr/lib64/R/library/ape/doc/DrawingPhylogenies.pdf701.28 KB
/usr/lib64/R/library/ape/doc/MoranI.R2.70 KB
/usr/lib64/R/library/ape/doc/MoranI.Rnw12.79 KB
/usr/lib64/R/library/ape/doc/MoranI.pdf207.30 KB
/usr/lib64/R/library/ape/doc/RandomTopologies.R8.03 KB
/usr/lib64/R/library/ape/doc/RandomTopologies.Rnw21.16 KB
/usr/lib64/R/library/ape/doc/RandomTopologies.pdf239.21 KB
/usr/lib64/R/library/ape/doc/index.html2.38 KB
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