Tue, 30 Jul 2024 17:13:10 UTC | login

Information for build python-steps-3.6.0-35.fc41

ID311650
Package Namepython-steps
Version3.6.0
Release35.fc41
Epoch
Sourcegit+https://src.fedoraproject.org/rpms/python-steps.git#8153fba9273e9f79614c5a22e3a7898192018ad1
SummarySTochastic Engine for Pathway Simulation
Description STEPS is a package for exact stochastic simulation of reaction-diffusion systems in arbitrarily complex 3D geometries. Our core simulation algorithm is an implementation of Gillespie's SSA, extended to deal with diffusion of molecules over the elements of a 3D tetrahedral mesh. While it was mainly developed for simulating detailed models of neuronal signaling pathways in dendrites and around synapses, it is a general tool and can be used for studying any biochemical pathway in which spatial gradients and morphology are thought to play a role. STEPS also supports accurate and efficient computational of local membrane potentials on tetrahedral meshes, with the addition of voltage-gated channels and currents. Tight integration between the reaction-diffusion calculations and the tetrahedral mesh potentials allows detailed coupling between molecular activity and local electrical excitability. We have implemented STEPS as a set of Python modules, which means STEPS users can use Python scripts to control all aspects of setting up the model, generating a mesh, controlling the simulation and generating and analyzing output. The core computational routines are still implemented as C/C++ extension modules for maximal speed of execution. STEPS 3.0.0 and above provide early parallel solution for stochastic spatial reaction-diffusion and electric field simulation. Documentation can be found here: http://steps.sourceforge.net/manual/manual_index.html
Built bydavidlt
State failed
Volume DEFAULT
StartedMon, 15 Jul 2024 11:16:37 UTC
CompletedMon, 15 Jul 2024 11:56:33 UTC
Taskbuild (f41, /rpms/python-steps.git:8153fba9273e9f79614c5a22e3a7898192018ad1)
Extra{'source': {'original_url': 'git+https://src.fedoraproject.org/rpms/python-steps.git#8153fba9273e9f79614c5a22e3a7898192018ad1'}}
Tags No tags
RPMs No RPMs
Changelog * Sat Jun 08 2024 Python Maint <python-maint@redhat.com> - 3.6.0-35 - Rebuilt for Python 3.13 * Fri Jan 26 2024 Fedora Release Engineering <releng@fedoraproject.org> - 3.6.0-34 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Mon Jan 22 2024 Fedora Release Engineering <releng@fedoraproject.org> - 3.6.0-33 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Mon Oct 30 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-32 - Rebuild for gtest 1.14.0 * Sun Oct 29 2023 Orion Poplawski <orion@nwra.com> - 3.6.0-31 - Rebuild for openmpi 5.0.0, drops C++ API * Fri Jul 21 2023 Fedora Release Engineering <releng@fedoraproject.org> - 3.6.0-30 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Tue Jun 27 2023 Python Maint <python-maint@redhat.com> - 3.6.0-29 - Rebuilt for Python 3.12 * Fri Feb 03 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-28 - Leaf package on ix86: drop ix86 support * Tue Jan 24 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-27 - Rebuilt for gtest 1.13.0 (fix RHBZ#2164003) - Build with C++14 instead of C++11, since gtest dropped support - Add a missing #include directive for GCC 13 * Tue Jan 24 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-26 - Remove old easylogging++ sources from dist-git * Fri Jan 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 3.6.0-25 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Thu Sep 08 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-24 - Tidy up spec file formatting * Thu Sep 08 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-23 - Stop numbering patches * Thu Sep 08 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-22 - Unbundle easyloggingpp * Mon Aug 29 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-21 - Improve treatment of bundled sundials(2) - Unbundling currently works up to linking, where there are undefined references * Mon Aug 29 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-20 - Use more standard macros where we can * Mon Aug 29 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-19 - Add -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF to match %%cmake * Mon Aug 29 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-18 - Use pkgconf to set unbundled gtest flags * Mon Aug 29 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-17 - Simplify patch application * Mon Aug 29 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-16 - Better handle bundled easyloggingpp dependency * Thu Aug 18 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-15 - Remove unbundled dependencies in %%prep * Thu Aug 18 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-14 - Remove workaround for pre-flexiblas Fedora versions * Thu Aug 18 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 3.6.0-13 - Reduce macro indirection in the spec file * Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 3.6.0-12 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Sun Jul 10 2022 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 3.6.0-11 - fix: correct macro * Tue Jul 05 2022 Mamoru TASAKA <mtasaka@fedoraproject.org> - 3.6.0-8 - Add more template funtion to match (bug 2046914) * Wed Jun 15 2022 Python Maint <python-maint@redhat.com> - 3.6.0-7 - Rebuilt for Python 3.11