R-qtl-1.60-1.fc38 | Build Info

Information for build R-qtl-1.60-1.fc38

250166

Package Name

R-qtl

Version

1.60

Release

1.fc38

Epoch

Source

git+https://src.fedoraproject.org/rpms/R-qtl.git#22d1d7ba994080f8a99bfead42b3df88c055e130

Summary

Tools for analyzing QTL experiments

Description

R-qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental crosses. Our goal is to make complex QTL mapping methods widely accessible and allow users to focus on modeling rather than computing. A key component of computational methods for QTL mapping is the hidden Markov model (HMM) technology for dealing with missing genotype data. We have implemented the main HMM algorithms, with allowance for the presence of genotyping errors, for backcrosses, intercrosses, and phase-known four-way crosses. The current version of R-qtl includes facilities for estimating genetic maps, identifying genotyping errors, and performing single-QTL genome scans and two-QTL, two-dimensional genome scans, by interval mapping (with the EM algorithm), Haley-Knott regression, and multiple imputation. All of this may be done in the presence of covariates (such as sex, age or treatment). One may also fit higher-order QTL models by multiple imputation and Haley-Knott regression.

Built by

davidlt

State

complete

Volume

DEFAULT

Started

Thu, 22 Jun 2023 06:26:16 UTC

Completed

Thu, 22 Jun 2023 08:34:01 UTC

Task

build (f38, /rpms/R-qtl.git:22d1d7ba994080f8a99bfead42b3df88c055e130)

Extra

{'source': {'original_url': 'git+https://src.fedoraproject.org/rpms/R-qtl.git#22d1d7ba994080f8a99bfead42b3df88c055e130'}}

Tags

f38

f39

f40

RPMs

src
	R-qtl-1.60-1.fc38.src.rpm (info) (download)
riscv64
	R-qtl-1.60-1.fc38.riscv64.rpm (info) (download)
	R-qtl-debuginfo-1.60-1.fc38.riscv64.rpm (info) (download)
	R-qtl-debugsource-1.60-1.fc38.riscv64.rpm (info) (download)

Logs

riscv64
	hw_info.log
	state.log
	build.log
	root.log
	mock_output.log

Changelog

* Tue May 16 2023 Mattias Ellert <mattias.ellert@physics.uu.se> - 1.60-1 - Update to 1.60 - Drop workaround for broken openblas on aarch64 in RHEL 8 and 9 Fixed in RHEL 8.8 and 9.2 respectively * Fri Apr 21 2023 Iñaki Úcar <iucar@fedoraproject.org> - 1.58-2 - R-maint-sig mass rebuild * Wed Jan 25 2023 Mattias Ellert <mattias.ellert@physics.uu.se> - 1.58-1 - Update to 1.58 - Workaround broken openblas on aarch64 in RHEL 8 and 9 * Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.52-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Thu Sep 01 2022 Tom Callaway <spot@fedoraprojet.org> - 1.52-3 - rebuild for R 4.2.1 * Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.52-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Wed Jul 13 2022 Mattias Ellert <mattias.ellert@physics.uu.se> - 1.52-1 - Update to 1.52 * Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.50-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Dec 15 2021 Mattias Ellert <mattias.ellert@physics.uu.se> - 1.50-1 - Update to 1.50 * Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.48.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Mon Jun 14 2021 Tom Callaway <spot@fedoraproject.org> - 1.48.1-2 - Rebuilt for R 4.1.0

Main Site Links:

Information for build R-qtl-1.60-1.fc38