Initial checkin

2017-04-11 10:12:21 +00:00 · 2017-04-11 10:12:21 +00:00 · d51855372c
parent cf38981d67
commit d51855372c
6 changed files with 324 additions and 0 deletions
--- a/.gitignore
+++ b/.gitignore
@ -0,0 +1 @@
+/superlu_dist_5.1.3.tar.gz
--- a/1
+++ b/1
@ -0,0 +1 @@
+SHA512 (superlu_dist_5.1.3.tar.gz) = 064942171543006047d5379bc47d27d14467a116e8d2fd8dac82283e237757e2afd31a4ad51c2925323c1b59e70e15da38c6b35db3c1d14b520fc02b906704b6
--- a/superlu_dist-make.inc
+++ b/superlu_dist-make.inc
@ -0,0 +1,39 @@
+############################################################################
+#
+#  Program:         SuperLU_DIST
+#
+#  Module:          make.inc
+#
+#  Purpose:         Top-level Definitions
+#
+#  Creation date:   March 1, 2016	version 5.0.0
+#
+#  Modified:	    
+#		    
+#
+############################################################################
+#
+#  The name of the libraries to be created/linked to
+#
+SuperLUroot	=
+DSUPERLULIB   	= $(SuperLUroot)/SRC/libsuperlu_dist.a
+
+LIBS		= $(DSUPERLULIB) -lptscotchparmetis -lptscotch -lptscotcherr -lmetis -lscotch -lopenblas
+
+#
+#  The archiver and the flag(s) to use when building archive (library)
+#  If your system has no ranlib, set RANLIB = echo.
+#
+ARCH         = /usr/bin/ar
+ARCHFLAGS    = cr
+RANLIB       = /usr/bin/ranlib
+
+CC           = mpicc
+CFLAGS 	     += -O3 -DNDEBUG  -DUSE_VENDOR_BLAS -DDEBUGlevel=0 -DPRNTlevel=0 -fopenmp -std=c99 -fPIC -g
+# CFLAGS       += -D
+# CFLAGS       +=  
+NOOPTS       = -O0
+FORTRAN	     = mpif90
+
+LOADER       = $(CC) -fopenmp
+LOADOPTS     = 
--- a/superlu_dist-output.patch
+++ b/superlu_dist-output.patch
@ -0,0 +1,22 @@
+--- SuperLU_DIST_5.1.2/SRC/dmemory_dist.c~	2016-10-21 19:50:33.000000000 +0100
+++ SuperLU_DIST_5.1.2/SRC/dmemory_dist.c	2016-11-17 11:56:08.419300143 +0000
+@@ -129,7 +129,7 @@
+     mem_usage->total += (float)(2 * k * iword);
+ #else
+     /*mem_usage->total += stat->current_buffer;*/
+-    printf(".. dQuery_Space: peak_buffer %.2f (MB)\n", stat->peak_buffer * 1.0e-6);
+    /* printf(".. dQuery_Space: peak_buffer %.2f (MB)\n", stat->peak_buffer * 1.0e-6); */
+     mem_usage->total += stat->peak_buffer;
+ #endif
+ 
+--- SuperLU_DIST_5.1.2/SRC/zmemory_dist.c~	2016-10-21 19:50:33.000000000 +0100
+++ SuperLU_DIST_5.1.2/SRC/zmemory_dist.c	2016-11-17 11:57:18.260046576 +0000
+@@ -128,7 +128,7 @@
+     mem_usage->total += (float)(2 * k * iword);
+ #else
+     /*mem_usage->total += stat->current_buffer;*/
+-    printf(".. zQuery_Space: peak_buffer %.2f (MB)\n", stat->peak_buffer * 1.0e-6);
+    /* printf(".. zQuery_Space: peak_buffer %.2f (MB)\n", stat->peak_buffer * 1.0e-6); */
+     mem_usage->total += stat->peak_buffer;
+ #endif
+ 
--- a/superlu_dist-parmetis.patch
+++ b/superlu_dist-parmetis.patch
@ -0,0 +1,12 @@
+--- SuperLU_DIST_5.1.0/SRC/get_perm_c_parmetis.c~	2016-05-16 06:16:44.000000000 +0100
+++ SuperLU_DIST_5.1.0/SRC/get_perm_c_parmetis.c	2016-10-17 00:48:13.758797521 +0100
+@@ -24,6 +24,9 @@
+ /* limits.h:  the largest positive integer (INT_MAX) */
+ #include <limits.h>
+ #include <math.h>
+#include <sys/types.h>
+#include <stdio.h>
+#include <scotch.h>
+ #include "parmetis.h"
+ #include "superlu_ddefs.h"
+ 
--- a/superlu_dist.spec
+++ b/superlu_dist.spec
@ -0,0 +1,249 @@
+# Copyright (c) 2016 Dave Love, Liverpool University
+# MIT licence, per Fedora policy.
+
+Name:          superlu_dist
+Version:       5.1.3
+Release:       1%{?dist}
+Summary:       Solution of large, sparse, nonsymmetric systems of linear equations
+License:       BSD
+URL:           http://crd-legacy.lbl.gov/~xiaoye/SuperLU/
+Source0:       http://crd-legacy.lbl.gov/~xiaoye/SuperLU/superlu_dist_%version.tar.gz
+Source1:       superlu_dist-make.inc
+# Make the parmetis support work with Scotch
+Patch1:        superlu_dist-parmetis.patch
+# Zap diagnostics, recommended in
+# <https://math.berkeley.edu/~linlin/pexsi/page_dependency.html>
+Patch2:        superlu_dist-output.patch
+BuildRequires: scotch-devel gcc-gfortran openblas-devel
+# The test program runs if we link with -lmetis but crashes if linked with
+# -lscotchmetis.
+BuildRequires: metis-devel
+
+%bcond_without mpich
+%global mpich mpich
+%ifarch %power64
+%if 0%{?el6}
+%bcond_with mpich
+%global mpich %nil
+%endif
+%endif
+
+%bcond_without openmpi
+%ifarch s390 s390x
+%bcond_with openmpi
+%endif
+
+%if %{with openmpi}
+%global openmpi openmpi
+%else
+%global openmpi %nil
+%endif
+%if %{with mpich}
+%global mpich mpich
+%else
+%global mpich %nil
+%endif
+
+# For library soname.  Start at one in case we need the incompatible
+# v4 packaged separately.
+%global major 1
+%global minor 0
+%global miner 0
+%global sover %major.%minor.%miner
+
+
+%global desc \
+SuperLU is a general purpose library for the direct solution of large,\
+sparse, nonsymmetric systems of linear equations.  The library is\
+written in C and is callable from either C or Fortran program.  It\
+uses MPI, OpenMP and CUDA to support various forms of parallelism.  It\
+supports both real and complex datatypes, both single and double\
+precision, and 64-bit integer indexing.  The library routines performs\
+an LU decomposition with partial pivoting and triangular system solves\
+through forward and back substitution.  The LU factorization routines\
+can handle non-square matrices but the triangular solves are performed\
+only for square matrices.  The matrix columns may be preordered\
+(before factorization) either through library or user supplied\
+routines.  This preordering for sparsity is completely separate from\
+the factorization.  Working precision iterative refinement subroutines\
+are provided for improved backward stability.  Routines are also\
+provided to equilibrate the system, estimate the condition number,\
+calculate the relative backward error, and estimate error bounds for\
+the refined solutions.\
+\
+This version uses MPI and OpenMP.
+
+
+%description
+%desc
+
+%if %{with openmpi}
+%package openmpi
+Summary:       Solution of large, sparse, nonsymmetric systems of linear equations - openmpi
+Requires:      openmpi%{?_isa}
+
+%description openmpi
+%desc
+
+This is the openmpi version.
+
+%package openmpi-devel
+Summary: Development files for %name-openmpi
+BuildRequires: openmpi-devel ptscotch-openmpi-devel-parmetis
+BuildRequires: ptscotch-openmpi-devel
+Requires: openmpi-devel%{?_isa}
+Requires: %name-openmpi%{?_isa} = %version-%release
+
+%description openmpi-devel
+Development files for %name-openmpi
+%endif
+
+%package doc
+Summary: Documentation for %name
+BuildArch: noarch
+
+%description doc
+Documentation for %name
+
+%if %{with mpich}
+%package mpich
+Summary:       Solution of large, sparse, nonsymmetric systems of linear equations - mpich
+BuildRequires: mpich-devel ptscotch-mpich-devel ptscotch-mpich-devel-parmetis
+Requires:      mpich%{?_isa}
+
+%description mpich
+%desc
+
+This is the mpich version.
+
+%package mpich-devel
+Summary: Development files for %name-mpich
+Requires: mpich-devel%{?_isa}
+Requires: %name-mpich%{?_isa} = %version-%release
+
+%description mpich-devel
+Development files for %name-mpich
+%endif
+
+
+%prep
+%setup -q -n SuperLU_DIST_%version
+%patch1 -p1
+%patch2 -p1
+cp %SOURCE1 make.inc
+
+%build
+# This order to leave openmpi version in place for %%check
+for m in %mpich %openmpi; do
+case $m in
+openmpi) %_openmpi_load ;;
+mpich) %_mpich_load ;;
+esac
+find -name \*.[oa] | xargs rm 2>/dev/null || true # no clean target
+pwd
+export CFLAGS="%optflags"
+make SuperLUroot=$(pwd)
+mkdir -p tmp $m
+pushd tmp
+ar x ../SRC/libsuperlu_dist.a
+mpicc -shared -Wl,-soname=libsuperlu_dist.so.%major -Wl,--as-needed \
+      -o ../$m/libsuperlu_dist.so.%sover *.o -fopenmp -lptscotchparmetis \
+      -lptscotch -lptscotcherr -lscotch -lmetis -lopenblas \
+      %{?__global_ldflags}
+popd
+case $m in
+openmpi)
+  cp -a EXAMPLE/pddrive .
+  %_openmpi_unload ;;
+mpich)
+  make -C EXAMPLE clean
+  %_mpich_unload ;;
+esac
+done
+
+
+%install
+
+for m in %mpich %openmpi; do
+case $m in
+openmpi) %_openmpi_load ;;
+mpich) %_mpich_load ;;
+esac
+mkdir -p %buildroot$MPI_LIB %buildroot$MPI_INCLUDE/superlu_dist
+install -m644 SRC/*.h %buildroot$MPI_INCLUDE/superlu_dist
+
+install -m 755 $m/libsuperlu_dist.so* %buildroot$MPI_LIB
+pushd %buildroot$MPI_LIB
+ln -s libsuperlu_dist.so.%sover libsuperlu_dist.so
+ln -s libsuperlu_dist.so.%sover libsuperlu_dist.so.%major
+ln -s libsuperlu_dist.so.%sover libsuperlu_dist.so.%major.%minor
+popd
+case $m in
+openmpi) %_openmpi_unload ;;
+mpich) %_mpich_unload ;;
+esac
+done
+
+%check
+%if %{with openmpi}
+# just check that it runs
+%_openmpi_load
+pushd EXAMPLE
+mpirun -n 4 ../pddrive -r 2 -c 2 g20.rua
+make clean
+%endif
+
+%{!?_licensedir:%global license %doc}
+%if %{with openmpi}
+%files openmpi
+%license License.txt
+%_libdir/openmpi/lib/*.so.*
+
+%files openmpi-devel
+%_libdir/openmpi/lib/*.so
+%_includedir/openmpi-%_arch/superlu_dist
+%endif
+
+%files doc
+%license License.txt
+%doc DOC/ug.pdf EXAMPLE
+
+%if %{with mpich}
+%files mpich
+%license License.txt
+%_libdir/mpich/lib/*.so.*
+
+%files mpich-devel
+%_libdir/mpich/lib/*.so
+%_includedir/mpich-%_arch/superlu_dist
+%endif
+
+
+%changelog
+* Wed Mar  8 2017 Dave Love <loveshack@fedoraproject.org> - 5.1.3-1
+- New version
+
+* Fri Nov 25 2016 Dave Love <loveshack@fedoraproject.org> - 5.1.2-3
+- Use optflags, __global_ldflags
+
+* Thu Nov 17 2016 Dave Love <loveshack@fedoraproject.org> - 5.1.2-2
+- Patch to avoid large diagnostic output
+
+* Thu Oct 27 2016 Dave Love <loveshack@fedoraproject.org> - 5.1.2-1
+- New version
+- Drop the OpenMP patch
+
+* Sat Oct 22 2016 Dave Love <loveshack@fedoraproject.org> - 5.1.1-3
+- Fix soname
+
+* Wed Oct 19 2016 Dave Love <loveshack@fedoraproject.org> - 5.1.1-2
+- Conditionalize openmpi
+
+* Mon Oct 17 2016 Dave Love <loveshack@fedoraproject.org> - 5.1.1-1
+- New version
+- Drop some patches and use ptscotch to replace parmetis
+- Add mpich version
+- Make -doc package
+
+* Fri Nov 20 2015 Dave Love <loveshack@fedoraproject.org> - 4.2-1
+- Initial version
				`@ -0,0 +1 @@`
				`SHA512 (superlu_dist_5.1.3.tar.gz) = 064942171543006047d5379bc47d27d14467a116e8d2fd8dac82283e237757e2afd31a4ad51c2925323c1b59e70e15da38c6b35db3c1d14b520fc02b906704b6`