Compare commits
1 Commits
| Author | SHA1 | Date | |
|---|---|---|---|
|
91ec27e71e |
14
.gitignore
vendored
14
.gitignore
vendored
@ -20,15 +20,5 @@ scipy-0.7.2.tar.gz
|
||||
/scipy-0.16.1.tar.gz
|
||||
/scipy-0.17.0.tar.gz
|
||||
/scipy-0.18.0.tar.xz
|
||||
/scipy-0.19.0.tar.xz
|
||||
/scipy-0.19.1.tar.xz
|
||||
/scipy-1.0.0.tar.xz
|
||||
/scipy-1.1.0.tar.gz
|
||||
/scipy-1.2.0.tar.gz
|
||||
/scipy-1.2.1.tar.gz
|
||||
/scipy-1.3.1.tar.gz
|
||||
/scipy-1.4.1.tar.gz
|
||||
/scipy-1.5.0.tar.gz
|
||||
/scipy-1.5.2.tar.gz
|
||||
/scipy-1.5.3.tar.gz
|
||||
/scipy-1.5.4.tar.gz
|
||||
/scipy.spec
|
||||
/scipy-0.18.1.tar.xz
|
||||
|
||||
355
scipy.spec
355
scipy.spec
@ -1,56 +1,39 @@
|
||||
# without means enabled
|
||||
%bcond_with doc
|
||||
%global with_python3 1
|
||||
%{?filter_setup:
|
||||
%filter_provides_in %{python2_sitearch}.*\.so$
|
||||
%filter_provides_in %{python3_sitearch}.*\.so$
|
||||
%filter_setup
|
||||
}
|
||||
|
||||
# Set to pre-release version suffix if building pre-release, else %%{nil}
|
||||
%global rcver %{nil}
|
||||
|
||||
%if 0%{?fedora} >= 33 || 0%{?rhel} >= 9
|
||||
%global blaslib flexiblas
|
||||
%global blasvar %{nil}
|
||||
%else
|
||||
%global blaslib openblas
|
||||
%global blasvar p
|
||||
%endif
|
||||
|
||||
Summary: Scientific Tools for Python
|
||||
Name: scipy
|
||||
Version: 1.5.4
|
||||
Release: 2%{?dist}
|
||||
Version: 0.18.1
|
||||
Release: 1%{?dist}
|
||||
|
||||
Group: Development/Libraries
|
||||
# BSD -- whole package except:
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||||
# Boost -- scipy/special/cephes/scipy_iv.c
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||||
# Public Domain -- scipy/odr/__odrpack.c
|
||||
License: BSD and Boost and Public Domain
|
||||
Url: http://www.scipy.org/scipylib/index.html
|
||||
Source0: https://github.com/scipy/scipy/releases/download/v%{version}/scipy-%{version}.tar.gz
|
||||
Source0: https://github.com/scipy/scipy/releases/download/v%{version}/scipy-%{version}.tar.xz
|
||||
|
||||
# https://github.com/scipy/scipy/pull/12899
|
||||
Patch0: skip-certain-tests-on-32-bit-arches.patch
|
||||
# https://github.com/scipy/scipy/pull/13130
|
||||
Patch1: skip-factorial-float-tests-on-py310.patch
|
||||
|
||||
BuildRequires: fftw-devel, suitesparse-devel
|
||||
BuildRequires: %{blaslib}-devel
|
||||
BuildRequires: gcc-gfortran, swig, gcc-c++
|
||||
BuildRequires: numpy, python2-devel,f2py
|
||||
BuildRequires: fftw-devel, blas-devel, lapack-devel, suitesparse-devel
|
||||
BuildRequires: atlas-devel
|
||||
BuildRequires: gcc-gfortran, swig
|
||||
BuildRequires: qhull-devel
|
||||
BuildRequires: /usr/bin/pathfix.py
|
||||
|
||||
BuildRequires: pybind11-devel
|
||||
BuildRequires: python3-pybind11 >= 2.4.0
|
||||
BuildRequires: python3-numpy, python3-devel, python3-numpy-f2py
|
||||
%if 0%{?with_python3}
|
||||
BuildRequires: python3-numpy, python3-devel, python3-f2py
|
||||
BuildRequires: python3-setuptools
|
||||
BuildRequires: python3-Cython
|
||||
BuildRequires: python3-pytest
|
||||
BuildRequires: python3-pytest-xdist
|
||||
BuildRequires: python3-pytest-timeout
|
||||
|
||||
%if %{with doc}
|
||||
BuildRequires: python3-sphinx
|
||||
BuildRequires: python3-matplotlib
|
||||
BuildRequires: python3-numpydoc
|
||||
BuildRequires: python3-nose
|
||||
%endif
|
||||
|
||||
%global _description %{expand:
|
||||
%description
|
||||
Scipy is open-source software for mathematics, science, and
|
||||
engineering. The core library is NumPy which provides convenient and
|
||||
fast N-dimensional array manipulation. The SciPy library is built to
|
||||
@ -59,27 +42,51 @@ numerical routines such as routines for numerical integration and
|
||||
optimization. Together, they run on all popular operating systems, are
|
||||
quick to install, and are free of charge. NumPy and SciPy are easy to
|
||||
use, but powerful enough to be depended upon by some of the world's
|
||||
leading scientists and engineers.}
|
||||
leading scientists and engineers.
|
||||
|
||||
%description %_description
|
||||
|
||||
%package -n python2-scipy
|
||||
Summary: Scientific Tools for Python
|
||||
Requires: numpy, f2py
|
||||
%{?python_provide:%python_provide python2-scipy}
|
||||
# General provides of plain 'scipy' in F24
|
||||
Provides: scipy = %{version}-%{release}
|
||||
Provides: scipy%{?_isa} = %{version}-%{release}
|
||||
Obsoletes: scipy <= 0.16.0
|
||||
%description -n python2-scipy
|
||||
Scipy is open-source software for mathematics, science, and
|
||||
engineering. The core library is NumPy which provides convenient and
|
||||
fast N-dimensional array manipulation. The SciPy library is built to
|
||||
work with NumPy arrays, and provides many user-friendly and efficient
|
||||
numerical routines such as routines for numerical integration and
|
||||
optimization. Together, they run on all popular operating systems, are
|
||||
quick to install, and are free of charge. NumPy and SciPy are easy to
|
||||
use, but powerful enough to be depended upon by some of the world's
|
||||
leading scientists and engineers.
|
||||
|
||||
|
||||
%if 0%{?with_python3}
|
||||
%package -n python3-scipy
|
||||
Summary: Scientific Tools for Python
|
||||
Group: Development/Libraries
|
||||
License: BSD and LGPLv2+
|
||||
Requires: python3-numpy, python3-f2py
|
||||
%{?python_provide:%python_provide python3-scipy}
|
||||
%description -n python3-scipy %_description
|
||||
|
||||
%if %{with doc}
|
||||
%package -n python3-scipy-doc
|
||||
Summary: Scientific Tools for Python - documentation
|
||||
Requires: python3-scipy = %{version}-%{release}
|
||||
%description -n python3-scipy-doc
|
||||
HTML documentation for Scipy
|
||||
%endif
|
||||
%description -n python3-scipy
|
||||
Scipy is open-source software for mathematics, science, and
|
||||
engineering. The core library is NumPy which provides convenient and
|
||||
fast N-dimensional array manipulation. The SciPy library is built to
|
||||
work with NumPy arrays, and provides many user-friendly and efficient
|
||||
numerical routines such as routines for numerical integration and
|
||||
optimization. Together, they run on all popular operating systems, are
|
||||
quick to install, and are free of charge. NumPy and SciPy are easy to
|
||||
use, but powerful enough to be depended upon by some of the world's
|
||||
leading scientists and engineers.
|
||||
|
||||
%endif # with _python3
|
||||
|
||||
%prep
|
||||
%autosetup -p1 -n %{name}-%{version}%{?rcver}
|
||||
%setup -q -n %{name}-%{version}%{?rcver}
|
||||
cat > site.cfg << EOF
|
||||
|
||||
[amd]
|
||||
@ -91,233 +98,72 @@ amd_libs = amd
|
||||
library_dirs = %{_libdir}
|
||||
include_dirs = /usr/include/suitesparse
|
||||
umfpack_libs = umfpack
|
||||
|
||||
[openblas]
|
||||
libraries = %{blaslib}%{blasvar}
|
||||
library_dirs = %{_libdir}
|
||||
EOF
|
||||
|
||||
# Docs won't build unless the .dat files are specified here
|
||||
sed -i 's/metadata = dict(/metadata = dict(package_data={"": ["*.dat"]},/' setup.py
|
||||
|
||||
# remove bundled numpydoc
|
||||
rm doc/sphinxext -r
|
||||
|
||||
rm $(grep -rl '/\* Generated by Cython') PKG-INFO
|
||||
|
||||
%build
|
||||
for PY in %{python3_version}; do
|
||||
# Adding -fallow-argument-mismatch workaround for https://github.com/scipy/scipy/issues/11611
|
||||
env CFLAGS="$RPM_OPT_FLAGS -lm" \
|
||||
%if 0%{?fedora} >= 32 || 0%{?rhel} >= 9
|
||||
FFLAGS="$RPM_OPT_FLAGS -fPIC -fallow-argument-mismatch" \
|
||||
%else
|
||||
%if 0%{?with_python3}
|
||||
env CFLAGS="$RPM_OPT_FLAGS" \
|
||||
FFLAGS="$RPM_OPT_FLAGS -fPIC" \
|
||||
%endif
|
||||
OPENBLAS=%{_libdir} \
|
||||
FFTW=%{_libdir} BLAS=%{_libdir} LAPACK=%{_libdir} \
|
||||
%{_bindir}/python$PY setup.py config_fc \
|
||||
--fcompiler=gnu95 --noarch \
|
||||
build
|
||||
ATLAS=%{_libdir}/atlas FFTW=%{_libdir} BLAS=%{_libdir} LAPACK=%{_libdir} \
|
||||
%__python3 setup.py config_fc \
|
||||
--fcompiler=gnu95 --noarch build
|
||||
%endif # with _python3
|
||||
|
||||
env CFLAGS="$RPM_OPT_FLAGS" \
|
||||
FFLAGS="$RPM_OPT_FLAGS -fPIC" \
|
||||
ATLAS=%{_libdir}/atlas FFTW=%{_libdir} BLAS=%{_libdir} LAPACK=%{_libdir} \
|
||||
%__python2 setup.py config_fc \
|
||||
--fcompiler=gnu95 --noarch build
|
||||
|
||||
|
||||
%if %{with doc}
|
||||
pushd doc
|
||||
export PYTHONPATH=$(echo ../build/lib.linux-*-$PY/)
|
||||
make html SPHINXBUILD=sphinx-build-$PY
|
||||
rm -rf build/html/.buildinfo
|
||||
mv build build-$PY
|
||||
popd
|
||||
%endif
|
||||
done
|
||||
|
||||
%install
|
||||
%py3_install
|
||||
# Some files got ambiguous python shebangs, we fix them after everything else is done
|
||||
pathfix.py -pni "%{__python3} %{py3_shbang_opts}" %{buildroot}%{python3_sitearch}
|
||||
# first install python3 so the binaries are overwritten by the python2 ones
|
||||
%if 0%{?with_python3}
|
||||
env CFLAGS="$RPM_OPT_FLAGS" \
|
||||
FFLAGS="$RPM_OPT_FLAGS -fPIC" \
|
||||
ATLAS=%{_libdir}/atlas FFTW=%{_libdir} BLAS=%{_libdir} LAPACK=%{_libdir} \
|
||||
%__python3 setup.py install --root=$RPM_BUILD_ROOT
|
||||
%endif # with_python3
|
||||
|
||||
env CFLAGS="$RPM_OPT_FLAGS" \
|
||||
FFLAGS="$RPM_OPT_FLAGS -fPIC" \
|
||||
ATLAS=%{_libdir}/atlas FFTW=%{_libdir} BLAS=%{_libdir} LAPACK=%{_libdir} \
|
||||
%__python2 setup.py install --root=$RPM_BUILD_ROOT
|
||||
|
||||
|
||||
%check
|
||||
# check against the reference BLAS/LAPACK
|
||||
export FLEXIBLAS=netlib
|
||||
%if 0%{?with_python3}
|
||||
mkdir test3
|
||||
cd test3
|
||||
PYTHONPATH=$RPM_BUILD_ROOT%{python3_sitearch} \
|
||||
%__python3 -c "import scipy; scipy.test('full', verbose=2)" || :
|
||||
%endif # with_python3
|
||||
|
||||
%ifarch s390x
|
||||
# skip failing tests on s390x for now
|
||||
export PYTEST_ADDOPTS="-k '\
|
||||
not (TestNoData and test_nodata) and \
|
||||
not test_fortranfile_read_mixed_record and \
|
||||
not test_kde_1d and \
|
||||
not test_kde_1d_weighted and \
|
||||
not test_kde_2d and \
|
||||
not test_kde_2d_weighted and \
|
||||
not test_gaussian_kde_subclassing and \
|
||||
not test_gaussian_kde_covariance_caching and \
|
||||
not test_kde_integer_input and \
|
||||
not test_pdf_logpdf and \
|
||||
not test_pdf_logpdf_weighted'"
|
||||
%endif
|
||||
mkdir test2
|
||||
cd test2
|
||||
PYTHONPATH=$RPM_BUILD_ROOT%{python2_sitearch} \
|
||||
%__python2 -c "import scipy; scipy.test('full', verbose=2)" || :
|
||||
|
||||
pushd %{buildroot}/%{python3_sitearch}
|
||||
%{pytest} --timeout=500 scipy --numprocesses=auto
|
||||
# Remove test remnants
|
||||
rm -rf gram{A,B}
|
||||
popd
|
||||
|
||||
%files -n python2-scipy
|
||||
%doc LICENSE.txt
|
||||
%{python2_sitearch}/scipy
|
||||
%{python2_sitearch}/*.egg-info
|
||||
|
||||
|
||||
%if 0%{?with_python3}
|
||||
%files -n python3-scipy
|
||||
%doc LICENSE.txt
|
||||
%{python3_sitearch}/scipy/
|
||||
%{python3_sitearch}/scipy
|
||||
%{python3_sitearch}/*.egg-info
|
||||
|
||||
%if %{with doc}
|
||||
%files -n python3-scipy-doc
|
||||
%license LICENSE.txt
|
||||
%doc doc/build-%{python3_version}/html
|
||||
%endif
|
||||
%endif # with_python3
|
||||
|
||||
%changelog
|
||||
* Wed Nov 25 2020 Nikola Forró <nforro@redhat.com> - 1.5.4-2
|
||||
- Skip factorial() float tests on Python 3.10
|
||||
resolves: #1898157
|
||||
|
||||
* Thu Nov 05 2020 Nikola Forró <nforro@redhat.com> - 1.5.4-1
|
||||
- New upstream release 1.5.4
|
||||
- Increase test timeout, 300 seconds is not always enough
|
||||
for test_logpdf_overflow on s390x
|
||||
resolves: #1894887
|
||||
|
||||
* Mon Oct 19 2020 Nikola Forró <nforro@redhat.com> - 1.5.3-1
|
||||
- New upstream release 1.5.3
|
||||
resolves: #1889132
|
||||
|
||||
* Wed Sep 30 2020 Nikola Forró <nforro@redhat.com> - 1.5.2-2
|
||||
- Skip one more test expected to fail on 32-bit architectures
|
||||
|
||||
* Mon Aug 31 2020 Nikola Forró <nforro@redhat.com> - 1.5.2-1
|
||||
- New upstream release 1.5.2
|
||||
resolves: #1853871 and #1840077
|
||||
|
||||
* Sun Aug 16 2020 Iñaki Úcar <iucar@fedoraproject.org> - 1.5.0-4
|
||||
- https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
|
||||
|
||||
* Sat Aug 01 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.5.0-3
|
||||
- Second attempt - Rebuilt for
|
||||
https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
|
||||
|
||||
* Wed Jul 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.5.0-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
|
||||
|
||||
* Tue Jun 23 2020 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 1.5.0-1
|
||||
- Update to latest version
|
||||
|
||||
* Mon May 25 2020 Miro Hrončok <mhroncok@redhat.com> - 1.4.1-2
|
||||
- Rebuilt for Python 3.9
|
||||
|
||||
* Sun Mar 01 2020 Orion Poplawski <orion@nwra.com> - 1.4.1-1
|
||||
- Update to 1.4.1 (bz#1771154)
|
||||
- Workaround FTBFS with gcc 10 (bz#1800078)
|
||||
|
||||
* Thu Jan 30 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.3.1-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
|
||||
|
||||
* Fri Oct 18 2019 Miro Hrončok <mhroncok@redhat.com> - 1.3.1-1
|
||||
- Update to 1.3.1 (#1674101)
|
||||
- Drop Python 2 packages (not supported by SciPy >= 1.3)
|
||||
- Backported upstream patch for cKDTree (fixes FTBFS)
|
||||
|
||||
* Thu Oct 03 2019 Miro Hrončok <mhroncok@redhat.com> - 1.2.1-8
|
||||
- Rebuilt for Python 3.8.0rc1 (#1748018)
|
||||
|
||||
* Mon Aug 19 2019 Miro Hrončok <mhroncok@redhat.com> - 1.2.1-7
|
||||
- Rebuilt for Python 3.8
|
||||
|
||||
* Tue Jul 30 2019 Petr Viktorin <pviktori@redhat.com> - 1.2.1-6
|
||||
- Remove build dependency on python2-pytest-xdist and python2-pytest-timeout
|
||||
- Enable parallel tests in Python 3 %%check
|
||||
- Use macros for Python interpreter in tests
|
||||
|
||||
* Fri Jul 26 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.2.1-5
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
|
||||
|
||||
* Mon Jun 10 2019 Marcel Plch <mplch@redhat.com> - 1.2.1-4
|
||||
- Fix FTBFS with Py3.8 (#1606315)
|
||||
|
||||
* Thu May 16 2019 Orion Poplawski <orion@nwra.com> - 1.2.1-3
|
||||
- Build only against openblasp (bugz#1709161)
|
||||
|
||||
* Fri Apr 26 2019 Orion Poplawski <orion@nwra.com> - 1.2.1-2
|
||||
- Do not create *-PYTEST.pyc files
|
||||
|
||||
* Tue Apr 23 2019 Orion Poplawski <orion@nwra.com> - 1.2.1-1
|
||||
- Update to 1.2.1
|
||||
- Drop scipy2-doc
|
||||
|
||||
* Wed Feb 06 2019 Charalampos Stratakis <cstratak@redhat.com> - 1.2.0-1
|
||||
- Update to 1.2.0
|
||||
|
||||
* Sat Feb 02 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.1.0-4
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
|
||||
|
||||
* Sat Jul 14 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.1.0-3
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
|
||||
|
||||
* Sat Jun 23 2018 Miro Hrončok <mhroncok@redhat.com> - 1.1.0-2
|
||||
- Don't ignore the tests results but rather have a tolerance rate
|
||||
- Skip test_decomp on ppc64le as it currently segfaults
|
||||
|
||||
* Fri Jun 22 2018 Miro Hrončok <mhroncok@redhat.com> - 1.1.0-1
|
||||
- Update to 1.1.0 (#1560265, #1594355)
|
||||
|
||||
* Tue Jun 19 2018 Miro Hrončok <mhroncok@redhat.com> - 1.0.0-8
|
||||
- Rebuilt for Python 3.7
|
||||
|
||||
* Fri Feb 09 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.0-7
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
|
||||
|
||||
* Fri Feb 02 2018 Petr Viktorin <pviktori@redhat.com> - 1.0.0-6
|
||||
- Link with -lm to build with new stricter Fedora flags
|
||||
https://bugzilla.redhat.com/show_bug.cgi?id=1541416
|
||||
|
||||
* Wed Jan 31 2018 Christian Dersch <lupinix@mailbox.org> - 1.0.0-5
|
||||
- rebuilt for GCC 8.x (gfortran soname bump)
|
||||
|
||||
* Mon Dec 11 2017 Lumír Balhar <lbalhar@redhat.com> - 1.0.0-4
|
||||
- Disable tests on s390x
|
||||
|
||||
* Mon Nov 20 2017 Lumír Balhar <lbalhar@redhat.com> - 1.0.0-3
|
||||
- New subpackages with HTML documentation
|
||||
|
||||
* Tue Oct 31 2017 Christian Dersch <lupinix@mailbox.org> - 1.0.0-2
|
||||
- Use openblas where available https://fedoraproject.org/wiki/Changes/OpenBLAS_as_default_BLAS
|
||||
- Remove ppc64 hackery for OpenBLAS
|
||||
- Don't run tests in parallel as pytest crashes
|
||||
- Don't run test_denormals as it tends to stuck
|
||||
|
||||
* Thu Oct 26 2017 Thomas Spura <tomspur@fedoraproject.org> - 1.0.0-1
|
||||
- update to 1.0.0 and use pytest instead of nose
|
||||
- use timeout during parallel %%check
|
||||
|
||||
* Wed Oct 04 2017 Christian Dersch <lupinix@mailbox.org> - 0.19.1-5
|
||||
- Use openblas where available (except ppc64), to use same as numpy (BZ 1472318)
|
||||
|
||||
* Thu Aug 03 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.19.1-4
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
|
||||
|
||||
* Thu Jul 27 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.19.1-3
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
|
||||
|
||||
* Fri Jul 07 2017 Igor Gnatenko <ignatenko@redhat.com> - 0.19.1-2
|
||||
- Rebuild due to bug in RPM (RHBZ #1468476)
|
||||
|
||||
* Tue Jun 27 2017 Christian Dersch <lupinix@mailbox.org> - 0.19.1-1
|
||||
* Wed Jun 07 2017 Christian Dersch <lupinix@mailbox.org> - 0.18.1-1
|
||||
- new version
|
||||
|
||||
* Wed Jun 07 2017 Christian Dersch <lupinix@mailbox.org> - 0.19.0-1
|
||||
- new version
|
||||
|
||||
* Tue Jan 31 2017 Zbigniew Jędrzejewski-Szmek <zbyszek@in.waw.pl> - 0.18.0-3
|
||||
- Rebuild for libgfortran.so.3
|
||||
|
||||
* Mon Dec 12 2016 Stratakis Charalampos <cstratak@redhat.com> - 0.18.0-2
|
||||
- Rebuild for Python 3.6
|
||||
|
||||
* Tue Jul 26 2016 Than Ngo <than@redhat.com> - 0.18.0-1
|
||||
- 0.18.0
|
||||
- %%check: make non-fatal as temporary workaround for scipy build on arm
|
||||
@ -610,3 +456,4 @@ popd
|
||||
- Add changelog
|
||||
- Removed Prefix, Vendor
|
||||
- Fix Source0
|
||||
|
||||
|
||||
@ -1,47 +0,0 @@
|
||||
From ea0a77cf8761a8b8636b93314139ed0fc0a9d1db Mon Sep 17 00:00:00 2001
|
||||
From: =?UTF-8?q?Nikola=20Forr=C3=B3?= <nforro@redhat.com>
|
||||
Date: Wed, 30 Sep 2020 11:44:25 +0200
|
||||
Subject: [PATCH] TST: make a couple of tests expected to fail on 32-bit
|
||||
architectures
|
||||
MIME-Version: 1.0
|
||||
Content-Type: text/plain; charset=UTF-8
|
||||
Content-Transfer-Encoding: 8bit
|
||||
|
||||
In TestConstructUtils.test_concatenate_int32_overflow
|
||||
and test_nnz_overflow, on a 32-bit architecture, in case
|
||||
check_free_memory() passes, ValueError is raised on an attempt
|
||||
to create a numpy array too large for a 32-bit architecture.
|
||||
|
||||
Signed-off-by: Nikola Forró <nforro@redhat.com>
|
||||
---
|
||||
scipy/sparse/tests/test_construct.py | 1 +
|
||||
scipy/sparse/tests/test_sparsetools.py | 1 +
|
||||
2 files changed, 2 insertions(+)
|
||||
|
||||
diff --git a/scipy/sparse/tests/test_construct.py b/scipy/sparse/tests/test_construct.py
|
||||
index 3a882c6cc..5a2b92667 100644
|
||||
--- a/scipy/sparse/tests/test_construct.py
|
||||
+++ b/scipy/sparse/tests/test_construct.py
|
||||
@@ -378,6 +378,7 @@ class TestConstructUtils(object):
|
||||
excinfo.match(r'Got blocks\[0,1\]\.shape\[0\] == 1, expected 2')
|
||||
|
||||
@pytest.mark.slow
|
||||
+ @pytest.mark.xfail_on_32bit("Can't create large array for test")
|
||||
def test_concatenate_int32_overflow(self):
|
||||
""" test for indptr overflow when concatenating matrices """
|
||||
check_free_memory(30000)
|
||||
diff --git a/scipy/sparse/tests/test_sparsetools.py b/scipy/sparse/tests/test_sparsetools.py
|
||||
index 0c208ef44..e95df1ba0 100644
|
||||
--- a/scipy/sparse/tests/test_sparsetools.py
|
||||
+++ b/scipy/sparse/tests/test_sparsetools.py
|
||||
@@ -61,6 +61,7 @@ def test_regression_std_vector_dtypes():
|
||||
|
||||
|
||||
@pytest.mark.slow
|
||||
+@pytest.mark.xfail_on_32bit("Can't create large array for test")
|
||||
def test_nnz_overflow():
|
||||
# Regression test for gh-7230 / gh-7871, checking that coo_todense
|
||||
# with nnz > int32max doesn't overflow.
|
||||
--
|
||||
2.26.2
|
||||
|
||||
@ -1,40 +0,0 @@
|
||||
From eabd8ea25fe291665f37fd069a1c574cd30d12cc Mon Sep 17 00:00:00 2001
|
||||
From: Victor Stinner <vstinner@python.org>
|
||||
Date: Wed, 25 Nov 2020 11:41:15 +0100
|
||||
Subject: [PATCH] GH-13122: Skip factorial() float tests on Python 3.10
|
||||
|
||||
special.factorial() argument should be an array of integers.
|
||||
On Python 3.10, math.factorial() reject float.
|
||||
On Python 3.9, a DeprecationWarning is emitted.
|
||||
A numpy array casts all integers to float if the array contains a
|
||||
single NaN.
|
||||
---
|
||||
scipy/special/tests/test_basic.py | 8 ++++++++
|
||||
1 file changed, 8 insertions(+)
|
||||
|
||||
diff --git a/scipy/special/tests/test_basic.py b/scipy/special/tests/test_basic.py
|
||||
index 9b7260e8435..e2ae29812a5 100644
|
||||
--- a/scipy/special/tests/test_basic.py
|
||||
+++ b/scipy/special/tests/test_basic.py
|
||||
@@ -19,6 +19,7 @@
|
||||
|
||||
import itertools
|
||||
import platform
|
||||
+import sys
|
||||
|
||||
import numpy as np
|
||||
from numpy import (array, isnan, r_, arange, finfo, pi, sin, cos, tan, exp,
|
||||
@@ -1822,6 +1823,13 @@ def test_nan_inputs(self, x, exact):
|
||||
result = special.factorial(x, exact=exact)
|
||||
assert_(np.isnan(result))
|
||||
|
||||
+ # GH-13122: special.factorial() argument should be an array of integers.
|
||||
+ # On Python 3.10, math.factorial() reject float.
|
||||
+ # On Python 3.9, a DeprecationWarning is emitted.
|
||||
+ # A numpy array casts all integers to float if the array contains a
|
||||
+ # single NaN.
|
||||
+ @pytest.mark.skipif(sys.version_info >= (3, 10),
|
||||
+ reason="Python 3.10+ math.factorial() requires int")
|
||||
def test_mixed_nan_inputs(self):
|
||||
x = np.array([np.nan, 1, 2, 3, np.nan])
|
||||
with suppress_warnings() as sup:
|
||||
2
sources
2
sources
@ -1 +1 @@
|
||||
SHA512 (scipy-1.5.4.tar.gz) = d23f68911a8880f87767819750d4d175ba8f9c72fcb9b8080305ee65722c046d4485fde4f0c85cc53c46247dd99813afe675a38b3b0569a683ddc2c2e021b8fc
|
||||
SHA512 (scipy-0.18.1.tar.xz) = 2231e315fed432847011fea4e41880c60b7f96bb536566a3f67fc9920e3171cd25b03489d74a33f923ced5983d7206bb09be739437a82d2f1d95afbd53898033
|
||||
|
||||
Loading…
Reference in New Issue
Block a user