Bootstrap for Python 3.13 (riscv64) and newer pybind11

Signed-off-by: David Abdurachmanov <davidlt@rivosinc.com>

.gitignore

@@ -32,3 +32,14 @@ scipy-0.7.2.tar.gz
 /scipy-1.5.2.tar.gz
 /scipy-1.5.3.tar.gz
 /scipy-1.5.4.tar.gz
+/scipy-1.6.0.tar.gz
+/scipy-1.6.1.tar.gz
+/scipy-1.6.2.tar.gz
+/scipy-1.7.0.tar.gz
+/scipy-1.7.3.tar.gz
+/scipy-1.8.0.tar.gz
+/scipy-1.8.1.tar.gz
+/scipy-1.10.0.tar.gz
+/scipy-1.10.1.tar.gz
+/scipy-1.11.1.tar.gz
+/scipy-1.11.3.tar.gz

19443.patch

@@ -0,0 +1,28 @@
+From 28413806316049c09bb4b0182f652cce0ba82a50 Mon Sep 17 00:00:00 2001
+From: "Benjamin A. Beasley" <code@musicinmybrain.net>
+Date: Fri, 27 Oct 2023 16:47:37 -0400
+Subject: [PATCH] TST: Fix #19442 minimally
+
+Use a sorted version of the set REAL_DTYPES to parameterize
+test_b_orthonormalize.
+---
+ scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py | 6 +++---
+ 1 file changed, 3 insertions(+), 3 deletions(-)
+
+diff --git a/scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py b/scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py
+index c17d37051fca..fd6f166dc62d 100644
+--- a/scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py
++++ b/scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py
+@@ -101,9 +101,9 @@ def test_MikotaPair():
+ 
+ @pytest.mark.parametrize("n", [50])
+ @pytest.mark.parametrize("m", [1, 2, 10])
+-@pytest.mark.parametrize("Vdtype", REAL_DTYPES)
+-@pytest.mark.parametrize("Bdtype", REAL_DTYPES)
+-@pytest.mark.parametrize("BVdtype", REAL_DTYPES)
++@pytest.mark.parametrize("Vdtype", sorted(REAL_DTYPES, key=str))
++@pytest.mark.parametrize("Bdtype", sorted(REAL_DTYPES, key=str))
++@pytest.mark.parametrize("BVdtype", sorted(REAL_DTYPES, key=str))
+ def test_b_orthonormalize(n, m, Vdtype, Bdtype, BVdtype):
+     """Test B-orthonormalization by Cholesky with callable 'B'.
+     The function '_b_orthonormalize' is key in LOBPCG but may

scipy.spec

@@ -1,6 +1,28 @@
+%global _without_pythran 1
 # without means enabled
 %bcond_with doc
 
+# Pythran is an optional build dependency.
+# When used, it makes some modules faster,
+# but it is usually not available soon enough for new major Python versions.
+%if 0%{?rhel}
+%bcond_with pythran
+%bcond_with pooch
+%else
+%bcond_without pythran
+%bcond_without pooch
+%endif
+
+# The code is not safe to build with LTO
+%global _lto_cflags %{nil}
+
+%ifarch %{ix86}
+# On i686, there is a confusion whether Fortran INTEGER should be
+# translated as int or long.
+# <https://github.com/scipy/scipy/issues/19993>
+%global build_type_safety_c 2
+%endif
+
 # Set to pre-release version suffix if building pre-release, else %%{nil}
 %global rcver %{nil}
 
@@ -14,35 +36,47 @@
 
 Summary:    Scientific Tools for Python
 Name:       scipy
-Version:    1.5.4
-Release:    2%{?dist}
+Version:    1.11.3
+Release:    13.0.riscv64%{?dist}
 
-# BSD -- whole package except:
-# Boost -- scipy/special/cephes/scipy_iv.c
-# Public Domain -- scipy/odr/__odrpack.c
-License:    BSD and Boost and Public Domain
+# BSD-3-Clause -- whole package except:
+# BSD-2-Clause -- scipy/_lib/_pep440.py
+#                 scipy/_lib/decorator.py
+#                 scipy/optimize/lbfgsb_src
+#                 scipy/special/_ellip_harm.pxd
+# MIT -- scipy/cluster/_optimal_leaf_ordering.pyx
+#        scipy/io/_idl.py
+#        scipy/linalg/_basic.py (in part)
+#        scipy/optimize/_highs
+#        scipy/optimize/_lbfgsb_py.py
+#        scipy/optimize/_tnc.py
+#        scipy/optimize/_trlib
+#        scipy/optimize/tnc
+#        scipy/special/Faddeeva.{cc,hh}
+# BSL-1.0 -- scipy/_lib/boost_math
+#            scipy/special/cephes
+# Boehm-GC -- scipy/sparse/linalg/_dsolve/SuperLU
+# Qhull -- scipy/spatial/qhull_src
+# LicenseRef-Fedora-Public-Domain -- scipy/odr/__odrpack.c
+License:    BSD-3-Clause AND BSD-2-Clause AND MIT AND BSL-1.0 AND Boehm-GC AND Qhull AND LicenseRef-Fedora-Public-Domain
 Url:        http://www.scipy.org/scipylib/index.html
 Source0:    https://github.com/scipy/scipy/releases/download/v%{version}/scipy-%{version}.tar.gz
 
-# https://github.com/scipy/scipy/pull/12899
-Patch0:     skip-certain-tests-on-32-bit-arches.patch
-# https://github.com/scipy/scipy/pull/13130
-Patch1:     skip-factorial-float-tests-on-py310.patch
+# TST: Fix #19442 minimally
+# https://github.com/scipy/scipy/pull/19443
+#
+# Fixes:
+#
+# BUG: Error collecting tests due to inconsistent parameterization order in
+# test_b_orthonormalize
+# https://github.com/scipy/scipy/issues/19442
+Patch:          https://github.com/scipy/scipy/pull/19443.patch
 
-BuildRequires: fftw-devel, suitesparse-devel
 BuildRequires: %{blaslib}-devel
-BuildRequires: gcc-gfortran, swig, gcc-c++
-BuildRequires: qhull-devel
-BuildRequires: /usr/bin/pathfix.py
+BuildRequires: gcc-gfortran, gcc-c++
 
 BuildRequires:  pybind11-devel
-BuildRequires:  python3-pybind11 >= 2.4.0
-BuildRequires:  python3-numpy, python3-devel, python3-numpy-f2py
-BuildRequires:  python3-setuptools
-BuildRequires:  python3-Cython
-BuildRequires:  python3-pytest
-BuildRequires:  python3-pytest-xdist
-BuildRequires:  python3-pytest-timeout
+BuildRequires:  python3-devel, python3-numpy-f2py
 
 %if %{with doc}
 BuildRequires:  python3-sphinx
@@ -66,7 +100,23 @@ leading scientists and engineers.}
 %package -n python3-scipy
 Summary:    Scientific Tools for Python
 Requires:   python3-numpy, python3-f2py
-%{?python_provide:%python_provide python3-scipy}
+%if %{with pooch}
+Requires:   python3-pooch
+%endif
+Provides:   bundled(arpack) = 3.3.0
+Provides:   bundled(biasedurn)
+Provides:   bundled(boost-math)
+Provides:   bundled(coin-or-HiGHS) = 1.2
+Provides:   bundled(Faddeeva)
+Provides:   bundled(id)
+Provides:   bundled(l-bfgs-b) = 3.0
+Provides:   bundled(LAPJVsp)
+Provides:   bundled(python3-decorator) = 4.0.5
+Provides:   bundled(python3-pep440)
+Provides:   bundled(python3-pypocketfft) = bf2c431c21213b7c5e23c2f542009b0bd3ec1445
+Provides:   bundled(qhull) = 2019.1
+Provides:   bundled(SuperLU) = 5.2.0
+Provides:   bundled(unuran) = 1.8.1
 %description -n python3-scipy %_description
 
 %if %{with doc}
@@ -77,94 +127,195 @@ Requires:   python3-scipy = %{version}-%{release}
 HTML documentation for Scipy
 %endif
 
+%package -n python3-scipy-tests
+Summary:    Scientific Tools for Python - test files
+Requires:   python3-scipy = %{version}-%{release}
+Requires:   python3-pytest
+%description -n python3-scipy-tests
+Scipy test files
 
 %prep
 %autosetup -p1 -n %{name}-%{version}%{?rcver}
-cat > site.cfg << EOF
 
-[amd]
-library_dirs = %{_libdir}
-include_dirs = /usr/include/suitesparse
-amd_libs = amd
+%if %{without pythran}
+# Remove pythran dependency if not explicitly required
+sed -i '/pythran/d' pyproject.toml
+%else
+# Relax it otherwise
+sed -i 's/pythran>=0.12.0,<0.15.0/pythran>=0.12.0/' pyproject.toml
+%endif
+%if %{without pooch}
+sed -i '/pooch/d' pyproject.toml
+%endif
 
-[umfpack]
-library_dirs = %{_libdir}
-include_dirs = /usr/include/suitesparse
-umfpack_libs = umfpack
+cat >> pyproject.toml << EOF
 
-[openblas]
-libraries = %{blaslib}%{blasvar}
-library_dirs = %{_libdir}
+[tool.meson-python.args]
+setup = ['-Dblas=%{blaslib}%{blasvar}', '-Dlapack=%{blaslib}%{blasvar}'%{!?with_pythran:, '-Duse-pythran=false'}]
 EOF
 
-# Docs won't build unless the .dat files are specified here
-sed -i 's/metadata = dict(/metadata = dict(package_data={"": ["*.dat"]},/' setup.py
+# Enable build with Python 3.13+
+# Upstream only allows Python pre-releases in git HEAD, not in releases.
+# However in Fedora, we actively build packages with Python pre-releases very soon.
+sed -i 's/requires-python = ">=3.9,<3.13"/requires-python = ">=3.9"/' pyproject.toml
 
-# remove bundled numpydoc
-rm doc/sphinxext -r
+# Docs won't build unless the .dat files are specified here
+sed -i 's/metadata = dict(/metadata = dict(package_data={"": ["*.dat"]},/' _setup.py
 
 rm $(grep -rl '/\* Generated by Cython') PKG-INFO
 
-%build
-for PY in %{python3_version}; do
-  # Adding -fallow-argument-mismatch workaround for https://github.com/scipy/scipy/issues/11611
-  env CFLAGS="$RPM_OPT_FLAGS -lm" \
-  %if 0%{?fedora} >= 32 || 0%{?rhel} >= 9
-      FFLAGS="$RPM_OPT_FLAGS -fPIC -fallow-argument-mismatch" \
-  %else
-      FFLAGS="$RPM_OPT_FLAGS -fPIC" \
-  %endif
-    OPENBLAS=%{_libdir} \
-    FFTW=%{_libdir} BLAS=%{_libdir} LAPACK=%{_libdir} \
-    %{_bindir}/python$PY setup.py config_fc \
-    --fcompiler=gnu95 --noarch \
-    build
+# numpy no longer contains a copy of distutils
+for f in $(grep -Frl numpy.distutils); do
+  sed -i.orig 's/numpy\.\(distutils\)/\1/g' $f
+  touch -r $f.orig $f
+  rm $f.orig
+done
 
-  %if %{with doc}
+# Do not do benchmarking, coverage, or timeout testing for RPM builds
+sed -Ei '/^[[:blank:]]*"(asv|pytest-cov|pytest-timeout)"/d' pyproject.toml
+
+# No scikit-umfpack in Fedora
+sed -i '/^[[:blank:]]*"scikit-umfpack"/d' pyproject.toml
+
+# No pytest-xdist in RHEL
+%if 0%{?rhel}
+sed -i '/^[[:blank:]]*"pytest-xdist"/d' pyproject.toml
+%endif
+
+# Loosen the lower bound on numpy
+sed -i "/numpy.*python_version=='3.12'/s/1\.26\.0/1\.24\.4/" pyproject.toml
+
+# Loosen the upper bound on meson-python
+sed -i '/meson-python/s/0\.15\.0/0\.17\.0/' pyproject.toml
+
+# Loosen the upper bound on Cython
+sed -i '/Cython/s/3\.0/3\.1/' pyproject.toml
+
+# Loosen the upper bound on pybind11
+sed -i '/pybind11/s/2\.11\.1/2.14.0/' pyproject.toml
+
+# Work around failure to detect open_memstream.  In glibc, open_memstream is
+# not a real function.  It is a weak alias to __open_memstream.
+sed -i "s/\('has_openmemstream', \)'0'/\1'1'/" scipy/_lib/meson.build
+
+# meson-python does not implement the prepare_metadata_for_build_wheel hook :(.
+# Instead of using -w and compiling the wheel, an expensive process, twice
+# (once to extract metadata, one for the final package), we can write the
+# static deps from pyproject.toml to a file, and use that with %%pyproject_buildrequires.
+#
+# See https://github.com/mesonbuild/meson-python/issues/236 for more discussion.
+
+# This could use tomcli, but we want to avoid pulling extra dependencies into ELN/RHEL.
+python3 -c '
+import tomllib
+from pathlib import Path
+
+with open("pyproject.toml", "rb") as fp:
+    data = tomllib.load(fp)
+Path("_install-requirements.txt").write_text("\n".join(data["project"]["dependencies"]))
+Path("_test-requirements.txt").write_text("\n".join(data["project"]["optional-dependencies"]["test"]))
+'
+
+%generate_buildrequires
+%pyproject_buildrequires -R _install-requirements.txt _test-requirements.txt
+
+%build
+%pyproject_wheel
+
+%if %{with doc}
+for PY in %{python3_version}; do
   pushd doc
   export PYTHONPATH=$(echo ../build/lib.linux-*-$PY/)
   make html SPHINXBUILD=sphinx-build-$PY
   rm -rf build/html/.buildinfo
   mv build build-$PY
   popd
-  %endif
 done
+%endif
 
 %install
-%py3_install
+%pyproject_install
+%pyproject_save_files scipy
+
 # Some files got ambiguous python shebangs, we fix them after everything else is done
-pathfix.py -pni "%{__python3} %{py3_shbang_opts}" %{buildroot}%{python3_sitearch}
+%py3_shebang_fix %{buildroot}%{python3_sitearch}
+
+# Fix executable bits
+chmod 0755 %{buildroot}%{python3_sitearch}/scipy/sparse/linalg/_isolve/tests/test_gcrotmk.py
 
 %check
 # check against the reference BLAS/LAPACK
 export FLEXIBLAS=netlib
 
+# TestDatasets try to download from the internet
+# test_decorator relies on an exact string output from docstrings which is newly stripped in Python 3.13
+# reported upstream: https://github.com/scipy/scipy/issues/19572
+SKIP_ALL="not TestDatasets and \
+not test_decorator"
+export PYTEST_ADDOPTS="-k '$SKIP_ALL'"
+
+%ifarch aarch64
+# TestConstructUtils::test_concatenate_int32_overflow is flaky on aarch64
+export PYTEST_ADDOPTS="-k '$SKIP_ALL and \
+not test_concatenate_int32_overflow'"
+%endif
+
 %ifarch s390x
-# skip failing tests on s390x for now
-export PYTEST_ADDOPTS="-k '\
-    not (TestNoData and test_nodata) and \
-    not test_fortranfile_read_mixed_record and \
-    not test_kde_1d and \
-    not test_kde_1d_weighted and \
-    not test_kde_2d and \
-    not test_kde_2d_weighted and \
-    not test_gaussian_kde_subclassing and \
-    not test_gaussian_kde_covariance_caching and \
-    not test_kde_integer_input and \
-    not test_pdf_logpdf and \
-    not test_pdf_logpdf_weighted'"
+# https://bugzilla.redhat.com/show_bug.cgi?id=1959353
+export PYTEST_ADDOPTS="-k '$SKIP_ALL and \
+not test_distance_transform_cdt05'"
+%endif
+
+%ifarch x86_64
+%if 0%{?rhel}
+# test_minimize_constrained started failing on ELN without any direct changes to scipy
+export PYTEST_ADDOPTS="-k '$SKIP_ALL and \
+not test_gh7799 and \
+not test_minimize_constrained'"
+%endif
+%endif
+
+%ifarch i686
+# https://github.com/scipy/scipy/issues/17213
+export PYTEST_ADDOPTS="-k '$SKIP_ALL and \
+not test_examples and \
+not test_shifts and \
+not test_svdp'"
+%endif
+
+%ifarch riscv64
+export PYTEST_ADDOPTS="-k '$SKIP_ALL and \
+not TestSchur and \
+not test_gejsv_general and \
+not test_kendall_p_exact_large and \
+not test_gejsv_edge_arguments and \
+not test_gh12999 and \
+not test_propack and \
+not test_milp and \
+not test_gejsv_NAG'"
 %endif
 
 pushd %{buildroot}/%{python3_sitearch}
-%{pytest} --timeout=500 scipy --numprocesses=auto
+# Ignoring the datasets tests as we don't have the optional pooch
+# dependency on RHEL.
+%{pytest} %{!?with_pooch:--ignore=scipy/datasets/tests/test_data.py} scipy %{?!rhel:--numprocesses=auto}
 # Remove test remnants
 rm -rf gram{A,B}
+rm -rf .pytest_cache
 popd
 
-%files -n python3-scipy
-%doc LICENSE.txt
-%{python3_sitearch}/scipy/
-%{python3_sitearch}/*.egg-info
+%files -n python3-scipy -f %{pyproject_files}
+%license LICENSE.txt LICENSES_bundled.txt
+%exclude %{python3_sitearch}/scipy/*/tests/
+%exclude %{python3_sitearch}/scipy/*/*/tests/
+%exclude %{python3_sitearch}/scipy/*/*/*/tests/
+%exclude %{python3_sitearch}/scipy/*/*/*/*/tests/ 
+
+%files -n python3-scipy-tests
+%{python3_sitearch}/scipy/*/tests/
+%{python3_sitearch}/scipy/*/*/tests/
+%{python3_sitearch}/scipy/*/*/*/tests/
+%{python3_sitearch}/scipy/*/*/*/*/tests/
 
 %if %{with doc}
 %files -n python3-scipy-doc
@@ -173,6 +324,158 @@ popd
 %endif
 
 %changelog
+* Fri Jul 12 2024 David Abdurachmanov <davidlt@rivosinc.com> - 1.11.3-13.0.riscv64
+- Bootstrap for Python 3.13 (riscv64)
+- Allow building with pybind11 2.13
+
+* Sun Jun 16 2024 Python Maint <python-maint@redhat.com> - 1.11.3-13
+- Rebuilt for Python 3.13
+
+* Sat Jun 08 2024 Python Maint <python-maint@redhat.com> - 1.11.3-12
+- Bootstrap for Python 3.13
+
+* Sat Jun 08 2024 Miro Hrončok <mhroncok@redhat.com> - 1.11.3-11
+- Relax the pythran dependency
+
+* Wed May 22 2024 Pavel Simovec <psimovec@redhat.com> - 1.11.3-10
+- Remove python3-pooch optional dependency from RHEL
+
+* Thu May 02 2024 Pavel Simovec <psimovec@redhat.com> - 1.11.3-9
+- Build without pythran in RHEL by default
+
+* Wed Apr 17 2024 Benjamin A. Beasley <code@musicinmybrain.net> - 1.11.3-8
+- Allow building with meson-python 0.16
+- Allow building with pybind11 2.12
+
+* Fri Feb 02 2024 Maxwell G <maxwell@gtmx.me> - 1.11.3-7
+- Use dynamic BuildRequires for python runtime dependencies
+
+* Tue Jan 30 2024 Miro Hrončok <mhroncok@redhat.com> - 1.11.3-6
+- Skip fewer tests during build
+
+* Mon Jan 29 2024 Florian Weimer <fweimer@redhat.com> - 1.11.3-5
+- Disable incompatible-pointer-types errors on i686 (#2258823)
+
+* Sat Jan 27 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.11.3-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
+
+* Thu Nov 30 2023 Karolina Surma <ksurma@redhat.com> - 1.11.3-3
+- Fix the build without pythran
+
+* Wed Nov 01 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 1.11.3-2
+- Patch error collecting tests with pytest-xdist
+
+* Wed Oct 11 2023 Jerry James <loganjerry@gmail.com> - 1.11.3-1
+- New upstream release 1.11.3
+  resolves: #2211813
+- Convert License tag to SPDX
+- Add Provides for bundled projects
+- Disable LTO
+- Pythran works on 32-bit architectures again
+- Fix detection of open_memstream
+- Use pyproject macros instead of the deprecated py3 macros
+- Reenable some tests that work again
+- Remove unused BuildRequires
+
+* Wed Jul 12 2023 psimovec <psimovec@redhat.com> - 1.11.1-1
+- New upstream release 1.11.1
+  resolves: #2211813
+- Separate tests into subpackage python3-scipy-tests
+
+* Mon Jul 10 2023 Python Maint <python-maint@redhat.com> - 1.10.1-5
+- Rebuilt for Python 3.12
+
+* Wed Jun 14 2023 Python Maint <python-maint@redhat.com> - 1.10.1-4
+- Bootstrap for Python 3.12
+
+* Tue May 23 2023 Yaakov Selkowitz <yselkowi@redhat.com> - 1.10.1-3
+- Avoid pytest-xdist dependency in RHEL builds
+
+* Wed Mar 15 2023 Pavel Šimovec <psimovec@redhat.com> - 1.10.1-2
+- Remove workaround for linking issue on x86_64
+- resolves: #2068530
+
+* Wed Feb 22 2023 Pavel Šimovec <psimovec@redhat.com> - 1.10.1-1
+- New upstream release 1.10.1
+  resolves: #2101172
+- Use the optional python3-pooch dependency
+
+* Sat Jan 21 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.8.1-7
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
+
+* Sat Jul 23 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.8.1-6
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
+
+* Sun Jul  3 2022 Mamoru TASAKA <mtasaka@fedoraproject.org> - 1.8.1-5
+- Fix linalg.lapack syevr segfault (#2099102)
+
+* Fri Jun 17 2022 Python Maint <python-maint@redhat.com> - 1.8.1-4
+- Rebuilt for Python 3.11
+
+* Tue Jun 14 2022 Python Maint <python-maint@redhat.com> - 1.8.1-3
+- Bootstrap for Python 3.11
+
+* Tue Jun 14 2022 Python Maint <python-maint@redhat.com> - 1.8.1-2
+- Rebuilt for Python 3.11
+
+* Thu Jun 09 2022 Nikola Forró <nforro@redhat.com> - 1.8.1-1
+- New upstream release 1.8.1
+  resolves: #2088437
+
+* Sat Mar 26 2022 Nikola Forró <nforro@redhat.com> - 1.8.0-3
+- Skip test_cython_api also on armv7hl
+
+* Sat Mar 26 2022 Nikola Forró <nforro@redhat.com> - 1.8.0-2
+- Disable pythran on armv7hl as well
+
+* Mon Feb 07 2022 Nikola Forró <nforro@redhat.com> - 1.8.0-1
+- New upstream release 1.8.0
+  resolves: #2035126
+
+* Sat Jan 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.3-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
+
+* Tue Dec 21 2021 Nikola Forró <nforro@redhat.com> - 1.7.3-1
+- New upstream release 1.7.3
+  resolves: #1988883
+
+* Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
+
+* Wed Jul 14 2021 Miro Hrončok <mhroncok@redhat.com> - 1.7.0-2
+- Use the optional Pythran build dependency
+
+* Wed Jun 23 2021 Nikola Forró <nforro@redhat.com> - 1.7.0-1
+- New upstream release 1.7.0
+  resolves: #1953422
+
+* Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 1.6.2-4
+- Rebuilt for Python 3.10
+
+* Fri Apr 23 2021 Nikola Forró <nforro@redhat.com> - 1.6.2-3
+- Remove RPATH from certain shared object files
+
+* Tue Mar 30 2021 Jonathan Wakely <jwakely@redhat.com> - 1.6.2-2
+- Rebuilt for removed libstdc++ symbol (#1937698)
+
+* Thu Mar 25 2021 Nikola Forró <nforro@redhat.com> - 1.6.2-1
+- New upstream release 1.6.2
+  resolves: #1942896
+
+* Thu Feb 18 2021 Nikola Forró <nforro@redhat.com> - 1.6.1-1
+- New upstream release 1.6.1
+  resolves: #1929994
+
+* Wed Feb 03 2021 Nikola Forró <nforro@redhat.com> - 1.6.0-3
+- Increase test timeout on s390x
+
+* Wed Jan 27 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.6.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
+
+* Mon Jan 04 2021 Nikola Forró <nforro@redhat.com> - 1.6.0-1
+- New upstream release 1.6.0
+  resolves: #1906692
+
 * Wed Nov 25 2020 Nikola Forró <nforro@redhat.com> - 1.5.4-2
 - Skip factorial() float tests on Python 3.10
   resolves: #1898157

skip-certain-tests-on-32-bit-arches.patch

@@ -1,47 +0,0 @@
-From ea0a77cf8761a8b8636b93314139ed0fc0a9d1db Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Nikola=20Forr=C3=B3?= <nforro@redhat.com>
-Date: Wed, 30 Sep 2020 11:44:25 +0200
-Subject: [PATCH] TST: make a couple of tests expected to fail on 32-bit
- architectures
-MIME-Version: 1.0
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-
-In TestConstructUtils.test_concatenate_int32_overflow
-and test_nnz_overflow, on a 32-bit architecture, in case
-check_free_memory() passes, ValueError is raised on an attempt
-to create a numpy array too large for a 32-bit architecture.
-
-Signed-off-by: Nikola Forró <nforro@redhat.com>
----
- scipy/sparse/tests/test_construct.py   | 1 +
- scipy/sparse/tests/test_sparsetools.py | 1 +
- 2 files changed, 2 insertions(+)
-
-diff --git a/scipy/sparse/tests/test_construct.py b/scipy/sparse/tests/test_construct.py
-index 3a882c6cc..5a2b92667 100644
---- a/scipy/sparse/tests/test_construct.py
-+++ b/scipy/sparse/tests/test_construct.py
-@@ -378,6 +378,7 @@ class TestConstructUtils(object):
-         excinfo.match(r'Got blocks\[0,1\]\.shape\[0\] == 1, expected 2')
- 
-     @pytest.mark.slow
-+    @pytest.mark.xfail_on_32bit("Can't create large array for test")
-     def test_concatenate_int32_overflow(self):
-         """ test for indptr overflow when concatenating matrices """
-         check_free_memory(30000)
-diff --git a/scipy/sparse/tests/test_sparsetools.py b/scipy/sparse/tests/test_sparsetools.py
-index 0c208ef44..e95df1ba0 100644
---- a/scipy/sparse/tests/test_sparsetools.py
-+++ b/scipy/sparse/tests/test_sparsetools.py
-@@ -61,6 +61,7 @@ def test_regression_std_vector_dtypes():
- 
- 
- @pytest.mark.slow
-+@pytest.mark.xfail_on_32bit("Can't create large array for test")
- def test_nnz_overflow():
-     # Regression test for gh-7230 / gh-7871, checking that coo_todense
-     # with nnz > int32max doesn't overflow.
--- 
-2.26.2
-

skip-factorial-float-tests-on-py310.patch

@@ -1,40 +0,0 @@
-From eabd8ea25fe291665f37fd069a1c574cd30d12cc Mon Sep 17 00:00:00 2001
-From: Victor Stinner <vstinner@python.org>
-Date: Wed, 25 Nov 2020 11:41:15 +0100
-Subject: [PATCH] GH-13122: Skip factorial() float tests on Python 3.10
-
-special.factorial() argument should be an array of integers.
-On Python 3.10, math.factorial() reject float.
-On Python 3.9, a DeprecationWarning is emitted.
-A numpy array casts all integers to float if the array contains a
-single NaN.
----
- scipy/special/tests/test_basic.py | 8 ++++++++
- 1 file changed, 8 insertions(+)
-
-diff --git a/scipy/special/tests/test_basic.py b/scipy/special/tests/test_basic.py
-index 9b7260e8435..e2ae29812a5 100644
---- a/scipy/special/tests/test_basic.py
-+++ b/scipy/special/tests/test_basic.py
-@@ -19,6 +19,7 @@
- 
- import itertools
- import platform
-+import sys
- 
- import numpy as np
- from numpy import (array, isnan, r_, arange, finfo, pi, sin, cos, tan, exp,
-@@ -1822,6 +1823,13 @@ def test_nan_inputs(self, x, exact):
-         result = special.factorial(x, exact=exact)
-         assert_(np.isnan(result))
- 
-+    # GH-13122: special.factorial() argument should be an array of integers.
-+    # On Python 3.10, math.factorial() reject float.
-+    # On Python 3.9, a DeprecationWarning is emitted.
-+    # A numpy array casts all integers to float if the array contains a
-+    # single NaN.
-+    @pytest.mark.skipif(sys.version_info >= (3, 10),
-+                        reason="Python 3.10+ math.factorial() requires int")
-     def test_mixed_nan_inputs(self):
-         x = np.array([np.nan, 1, 2, 3, np.nan])
-         with suppress_warnings() as sup:

sources

@@ -1 +1 @@
-SHA512 (scipy-1.5.4.tar.gz) = d23f68911a8880f87767819750d4d175ba8f9c72fcb9b8080305ee65722c046d4485fde4f0c85cc53c46247dd99813afe675a38b3b0569a683ddc2c2e021b8fc
+SHA512 (scipy-1.11.3.tar.gz) = 6491c4e479d9f4f02e677396a25ddca947a0dc6c009fc2ec34c658012a6224c0b535f14045bb011fbde9973ea987d184574ed64e6760c31798ec860eb0896fcf