New upstream release 1.6.2

- resolves: #1942896

.gitignore

@@ -34,3 +34,4 @@ scipy-0.7.2.tar.gz
 /scipy-1.5.4.tar.gz
 /scipy-1.6.0.tar.gz
 /scipy-1.6.1.tar.gz
+/scipy-1.6.2.tar.gz

scipy.spec

@@ -14,7 +14,7 @@
 
 Summary:    Scientific Tools for Python
 Name:       scipy
-Version:    1.6.1
+Version:    1.6.2
 Release:    1%{?dist}
 
 # BSD -- whole package except:
@@ -125,6 +125,25 @@ for PY in %{python3_version}; do
   %endif
 done
 
+# FIXME: shared objects built from Fortran sources contain RPATH, find a way to prevent that
+# scipy/integrate/_odepack
+# scipy/integrate/_quadpack
+# scipy/integrate/_test_odeint_banded
+# scipy/integrate/lsoda
+# scipy/integrate/vode
+# scipy/linalg/_fblas
+# scipy/linalg/_flapack
+# scipy/linalg/_flinalg
+# scipy/linalg/_interpolative
+# scipy/linalg/cython_blas
+# scipy/linalg/cython_lapack
+# scipy/odr/__odrpack
+# scipy/optimize/_lbfgsb
+# scipy/sparse/linalg/eigen/arpack/_arpack
+# scipy/sparse/linalg/isolve/_iterative
+# scipy/special/_ufuncs
+# scipy/special/cython_special
+
 %install
 %py3_install
 # Some files got ambiguous python shebangs, we fix them after everything else is done
@@ -174,6 +193,10 @@ popd
 %endif
 
 %changelog
+* Thu Mar 25 2021 Nikola Forró <nforro@redhat.com> - 1.6.2-1
+- New upstream release 1.6.2
+  resolves: #1942896
+
 * Thu Feb 18 2021 Nikola Forró <nforro@redhat.com> - 1.6.1-1
 - New upstream release 1.6.1
   resolves: #1929994

skip-certain-tests-on-32-bit-arches.patch

@@ -1,47 +0,0 @@
-From ea0a77cf8761a8b8636b93314139ed0fc0a9d1db Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Nikola=20Forr=C3=B3?= <nforro@redhat.com>
-Date: Wed, 30 Sep 2020 11:44:25 +0200
-Subject: [PATCH] TST: make a couple of tests expected to fail on 32-bit
- architectures
-MIME-Version: 1.0
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-
-In TestConstructUtils.test_concatenate_int32_overflow
-and test_nnz_overflow, on a 32-bit architecture, in case
-check_free_memory() passes, ValueError is raised on an attempt
-to create a numpy array too large for a 32-bit architecture.
-
-Signed-off-by: Nikola Forró <nforro@redhat.com>
----
- scipy/sparse/tests/test_construct.py   | 1 +
- scipy/sparse/tests/test_sparsetools.py | 1 +
- 2 files changed, 2 insertions(+)
-
-diff --git a/scipy/sparse/tests/test_construct.py b/scipy/sparse/tests/test_construct.py
-index 3a882c6cc..5a2b92667 100644
---- a/scipy/sparse/tests/test_construct.py
-+++ b/scipy/sparse/tests/test_construct.py
-@@ -378,6 +378,7 @@ class TestConstructUtils(object):
-         excinfo.match(r'Got blocks\[0,1\]\.shape\[0\] == 1, expected 2')
- 
-     @pytest.mark.slow
-+    @pytest.mark.xfail_on_32bit("Can't create large array for test")
-     def test_concatenate_int32_overflow(self):
-         """ test for indptr overflow when concatenating matrices """
-         check_free_memory(30000)
-diff --git a/scipy/sparse/tests/test_sparsetools.py b/scipy/sparse/tests/test_sparsetools.py
-index 0c208ef44..e95df1ba0 100644
---- a/scipy/sparse/tests/test_sparsetools.py
-+++ b/scipy/sparse/tests/test_sparsetools.py
-@@ -61,6 +61,7 @@ def test_regression_std_vector_dtypes():
- 
- 
- @pytest.mark.slow
-+@pytest.mark.xfail_on_32bit("Can't create large array for test")
- def test_nnz_overflow():
-     # Regression test for gh-7230 / gh-7871, checking that coo_todense
-     # with nnz > int32max doesn't overflow.
--- 
-2.26.2
-

skip-factorial-float-tests-on-py310.patch

@@ -1,40 +0,0 @@
-From eabd8ea25fe291665f37fd069a1c574cd30d12cc Mon Sep 17 00:00:00 2001
-From: Victor Stinner <vstinner@python.org>
-Date: Wed, 25 Nov 2020 11:41:15 +0100
-Subject: [PATCH] GH-13122: Skip factorial() float tests on Python 3.10
-
-special.factorial() argument should be an array of integers.
-On Python 3.10, math.factorial() reject float.
-On Python 3.9, a DeprecationWarning is emitted.
-A numpy array casts all integers to float if the array contains a
-single NaN.
----
- scipy/special/tests/test_basic.py | 8 ++++++++
- 1 file changed, 8 insertions(+)
-
-diff --git a/scipy/special/tests/test_basic.py b/scipy/special/tests/test_basic.py
-index 9b7260e8435..e2ae29812a5 100644
---- a/scipy/special/tests/test_basic.py
-+++ b/scipy/special/tests/test_basic.py
-@@ -19,6 +19,7 @@
- 
- import itertools
- import platform
-+import sys
- 
- import numpy as np
- from numpy import (array, isnan, r_, arange, finfo, pi, sin, cos, tan, exp,
-@@ -1822,6 +1823,13 @@ def test_nan_inputs(self, x, exact):
-         result = special.factorial(x, exact=exact)
-         assert_(np.isnan(result))
- 
-+    # GH-13122: special.factorial() argument should be an array of integers.
-+    # On Python 3.10, math.factorial() reject float.
-+    # On Python 3.9, a DeprecationWarning is emitted.
-+    # A numpy array casts all integers to float if the array contains a
-+    # single NaN.
-+    @pytest.mark.skipif(sys.version_info >= (3, 10),
-+                        reason="Python 3.10+ math.factorial() requires int")
-     def test_mixed_nan_inputs(self):
-         x = np.array([np.nan, 1, 2, 3, np.nan])
-         with suppress_warnings() as sup:

sources

@@ -1 +1 @@
-SHA512 (scipy-1.6.1.tar.gz) = 778a7bca15bb880a3fd1c3d46ef753920335eca95fe5f2b8512883a2aec1bb8e9d8a8fdbf4fee90e823e31980408a51451cc53d4f10c632cd72faf2856c868c8
+SHA512 (scipy-1.6.2.tar.gz) = 18b03f32e8343c5a6c6148ac0bfd4b5f2cc9ff5f74d5d41761ae9e773d6af8774c7b09a3fcc47122864eccce1dbbc17e9325819885d3fc3ab2baf98e7d3befa4