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python-scikit-image/python-scikit-image.spec

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%bcond_without check
%global srcname scikit-image
Name: python-scikit-image
Version: 0.22.0
Release: 2%{?dist}
Summary: Image processing in Python
# The following files are BSD 2 clauses, the rest BSD 3 clauses
# skimage/graph/_mcp.pyx
# skimage/graph/heap.pyx
License: BSD-2-Clause AND BSD-3-Clause
URL: http://scikit-image.org/
Source0: https://github.com/scikit-image/scikit-image/archive/v%{version}/%{srcname}-%{version}.tar.gz
# Select extra test data - you can build the package locally and then run:
# tar cJvf scikit-image-data.tar.xz -C scikit-image-0.21.0/scikit-image/0.21.0 .
Source1: scikit-image-data.tar.xz
BuildRequires: gcc gcc-c++
BuildRequires: xorg-x11-server-Xvfb
%global _description %{expand:
The scikit-image SciKit (toolkit for SciPy) extends scipy.ndimage to provide a
versatile set of image processing routines.}
%description %_description
%package -n python3-%{srcname}
Summary: %{summary}
BuildRequires: python3-devel
BuildRequires: python-unversioned-command
BuildRequires: %{py3_dist meson-python}
BuildRequires: %{py3_dist pip}
BuildRequires: %{py3_dist numpy}
BuildRequires: %{py3_dist scipy}
BuildRequires: %{py3_dist networkx}
BuildRequires: %{py3_dist pillow}
BuildRequires: %{py3_dist imageio}
BuildRequires: %{py3_dist tifffile}
BuildRequires: %{py3_dist PyWavelets}
BuildRequires: %{py3_dist packaging}
BuildRequires: %{py3_dist lazy_loader}
# optional-dependencies
BuildRequires: %{py3_dist Cython}
BuildRequires: pythran
%if %{with check}
BuildRequires: %{py3_dist pytest}
BuildRequires: %{py3_dist pytest-localserver}
BuildRequires: %{py3_dist matplotlib}
BuildRequires: %{py3_dist pooch}
BuildRequires: %{py3_dist numpydoc}
%endif
Obsoletes: %{srcname}-tools < 0.20.0
%description -n python3-%{srcname} %_description
%prep
%autosetup -n %{srcname}-%{version} -p1
# Extract test data - pooch looks for this path in XDG_CACHE_HOME
mkdir -p scikit-image/%{version}
tar xf %SOURCE1 -C scikit-image/%{version}
# Remove pinned numpy versions
sed -i -e '/numpy==/d' pyproject.toml
# For regeneration of cython source
rm -f $(grep -rl '/\* Generated by Cython')
# This currently requires building the whole package with -w, which is just too expensive
#generate_buildrequires
#pyproject_buildrequires -t -w
%build
%pyproject_wheel
%install
%pyproject_install
%pyproject_save_files skimage
%if %{with check}
%check
# Fake matplotlibrc
mkdir -p matplotlib
touch matplotlib/matplotlibrc
# For test data
export XDG_CACHE_HOME=$PWD
export XDG_CONFIG_HOME=$PWD
export PYTHONDONTWRITEBYTECODE=1
export PYTEST_ADDOPTS='-p no:cacheprovider'
pushd %{buildroot}/%{python3_sitearch}
# We deselect tests that require network data
xvfb-run pytest -v \
--deselect="skimage/data/tests/test_data.py::test_download_all_with_pooch" \
--deselect="skimage/data/tests/test_data.py::test_eagle" \
--deselect="skimage/data/tests/test_data.py::test_brain_3d" \
--deselect="skimage/data/tests/test_data.py::test_cells_3d" \
--deselect="skimage/data/tests/test_data.py::test_kidney_3d_multichannel" \
--deselect="skimage/data/tests/test_data.py::test_lily_multichannel" \
--deselect="skimage/data/tests/test_data.py::test_skin" \
--deselect="skimage/data/tests/test_data.py::test_vortex" \
--deselect="skimage/measure/tests/test_blur_effect.py::test_blur_effect_3d" \
--deselect="skimage/registration/tests/test_masked_phase_cross_correlation.py::test_masked_registration_3d_contiguous_mask" \
--deselect="skimage/io/tests/test_imageio.py::TestSave::test_imsave_roundtrip[shape1-uint16]" \
%ifarch i686
--deselect="skimage/measure/tests/test_fit.py::test_ellipse_parameter_stability" \
--deselect="skimage/util/tests/test_regular_grid.py::test_regular_grid_2d_8" \
--deselect="skimage/util/tests/test_regular_grid.py::test_regular_grid_3d_8" \
%endif
%ifarch s390x
--deselect="skimage/io/tests/test_imageio.py::TestSave::test_imsave_roundtrip[shape1-uint16]" \
--deselect="skimage/io/tests/test_pil.py::test_all_mono" \
--deselect="skimage/measure/tests/test_moments.py::test_analytical_moments_calculation[3-1-float32]" \
%endif
skimage
popd
%endif
%files -n python3-%{srcname} -f %{pyproject_files}
%doc CONTRIBUTORS.txt RELEASE.txt
%license LICENSE.txt
%changelog
* Sat Oct 28 2023 Sergio Pascual <sergiopr@fedoraproject.org> - 0.22.0-2
- New upstream source
* Fri Jul 21 2023 Fedora Release Engineering <releng@fedoraproject.org> - 0.21.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Tue Jul 11 2023 Sergio Pascual <sergiopr@fedoraproject.org> - 0.21.0-3
- Disable some tests failling in i686 and s390x
* Mon Jul 10 2023 Python Maint <python-maint@redhat.com> - 0.21.0-2
- Rebuilt for Python 3.12
* Sat Jun 03 2023 Orion Poplawski <orion@nwra.com> - 0.21.0-1
- Update to 0.21.0
- Use SPDX License
- Enable tests
- skivi was removed in 0.20.0, so dropped the scikit-image-tools package
* Sat Jun 03 2023 Orion Poplawski <orion@nwra.com> - 0.19.3-1
- Update to 0.19.3
* Fri Jan 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 0.19.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Wed Aug 03 2022 Sergio Pascual <sergiopr@fedoraproject.org> - 0.19.3-1
- New upstream version (0.19.3)
* Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.19.2-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Fri Jun 17 2022 Python Maint <python-maint@redhat.com> - 0.19.2-2
- Rebuilt for Python 3.11
* Wed Feb 23 2022 Sergio Pascual <sergiopr@fedoraproject.org> - 0.19.2-1
- New upstream version (0.19.2)
- New BuildReq: pythran
* Fri Jan 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.18.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Thu Oct 07 2021 Sergio Pascual <sergiopr@fedoraproject.org> - 0.18.3-1
- New upstream version (0.18.3)
* Mon Aug 23 2021 Sergio Pascual <sergiopr@fedoraproject.org> - 0.18.2-1
- New upstream version (0.18.2)
* Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.18.1-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
* Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 0.18.1-4
- Rebuilt for Python 3.10
* Thu Feb 11 2021 Sergio Pascual <sergiopr@fedoraproject.org> - 0.18.1-3
- Update testing
- Start using automatic requires
* Wed Jan 27 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.18.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
* Mon Jan 11 2021 Sergio Pascual <sergiopr@fedoraproject.org> - 0.18.1-1
- New upstream version (0.18.1)
* Thu Dec 17 2020 Sergio Pascual <sergiopr@fedoraproject.org> - 0.18.0-1
- New upstream version (0.18.0)
* Thu Aug 27 2020 Sergio Pascual <sergiopr@fedoraproject.org> - 0.17.2-1
- New upstream version (0.17.2)
* Wed Jul 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.16.2-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
* Tue May 26 2020 Miro Hrončok <mhroncok@redhat.com> - 0.16.2-4
- Rebuilt for Python 3.9
* Thu Feb 13 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.16.2-3
- Update dep on python3-networkx (no longer provides python3-networkx-core in F32+)
* Thu Jan 30 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.16.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
* Tue Oct 22 2019 Fedora Release Monitoring <release-monitoring@fedoraproject.org> - 0.16.2-1
- Update to 0.16.2 (#1763989)
+
* Tue Oct 15 2019 Orion Poplawski <orion@nwra.com> - 0.16.1-1
- Update to 0.16.1
- Re-generate Cython source
* Thu Sep 5 2019 Zbigniew Jędrzejewski-Szmek <zbyszek@in.waw.pl> - 0.15.0-1
- Rebuilt with fixed python-pywt
* Sat Aug 31 2019 Sergio Pascual <sergiopr@fedoraproject.org> - 0.15.0-1
- New upstream version (0.15.0)
* Mon Aug 19 2019 Miro Hrončok <mhroncok@redhat.com> - 0.14.2-3
- Rebuilt for Python 3.8
* Fri Jul 26 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.14.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
* Sun May 5 2019 Orion Poplawski <orion@nwra.com> - 0.14.2-1
- Update to 0.14.2 to fix numpy 1.16 compatibility (bugz#1706125)
- Add requires on dask and maplotlib-qt5 (bugz#1691823)
* Mon Mar 04 2019 Christian Dersch <lupinix@mailbox.org> - 0.14.0-7
- Disable automatic dependency generators until we fixed (optional) deps
* Sat Feb 02 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.14.0-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
* Mon Oct 01 2018 Miro Hrončok <mhroncok@redhat.com> - 0.14.0-5
- Remove Python 2 subpackage
* Tue Jul 17 2018 Christian Dersch <lupinix@fedoraproject.org> - 0.14.0-4
- BuildRequires: gcc
* Sat Jul 14 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.14.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
* Tue Jun 19 2018 Miro Hrončok <mhroncok@redhat.com> - 0.14.0-2
- Rebuilt for Python 3.7
* Mon Jun 11 2018 Sergio Pascual <sergiopr@fedoraproject.org> - 0.14.0-1
- New upstream version (0.14.0)
* Wed Feb 28 2018 Iryna Shcherbina <ishcherb@redhat.com> - 0.13.0-6
- Update Python 2 dependency declarations to new packaging standards
(See https://fedoraproject.org/wiki/FinalizingFedoraSwitchtoPython3)
* Fri Feb 09 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.13.0-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
* Thu Aug 03 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.13.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
* Thu Jul 27 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.13.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
* Thu Jun 01 2017 Sergio Pascual <sergiopr@fedoraproject.org> - 0.13.0-2
- Add dependency on pywt (PyWavelets)
* Mon May 15 2017 Sergio Pascual <sergiopr@fedoraproject.org> - 0.13.0-1
- New upstream version (0.13.0)
* Sat Feb 11 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.12.3-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
* Mon Dec 19 2016 Miro Hrončok <mhroncok@redhat.com> - 0.12.3-6
- Rebuild for Python 3.6
* Tue Aug 16 2016 Orion Poplawski <orion@cora.nwra.com> - 0.12.3-5
- Remove Cython build requirement
- Only build python3 for Fedora
* Tue Jul 19 2016 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.12.3-4
- https://fedoraproject.org/wiki/Changes/Automatic_Provides_for_Python_RPM_Packages
* Wed Apr 6 2016 Orion Poplawski <orion@cora.nwra.com> - 0.12.3-3
- Run tests, but do not abort build on failure
- Drop py3dir, use new python macros
* Tue Mar 29 2016 Sergio Pascual <sergiopr@fedoraproject.org> - 0.12.3-2
- New upstream source
- Disable tests for the moment
* Fri Feb 19 2016 Sergio Pascual <sergiopr@fedoraproject.org> - 0.11.3-8
- skivi uses python3 (bz #1309240)
- Provides "versioned" python2-scikit-image
* Thu Feb 04 2016 Fedora Release Engineering <releng@fedoraproject.org> - 0.11.3-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
* Tue Jan 05 2016 Sergio Pascual <sergiopr@fedoraproject.org> - 0.11.3-6
- Tarball without problematic copyrigth images (fixes bz #1295193)
* Mon Nov 23 2015 Sergio Pascual <sergiopr@fedoraproject.org> - 0.11.3-5
- Provides python2-scikit-image
* Tue Nov 10 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.11.3-4
- Rebuilt for https://fedoraproject.org/wiki/Changes/python3.5
* Thu Jun 18 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.11.3-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
* Thu May 21 2015 Sergio Pascual <sergiopr@fedoraproject.org> - 0.11.3-2
- Disable tests
- New upstream version (0.11.3)
* Thu Mar 12 2015 Sergio Pascual <sergiopr@fedoraproject.org> - 0.11.2-1
- New upstream version (0.11.2)
* Wed Feb 04 2015 Sergio Pascual <sergiopr@fedoraproject.org> - 0.11.0-1
- New upstream version
* Tue Jul 29 2014 Sergio Pascual <sergiopr@fedoraproject.org> - 0.10.1-2
- Remove __provides_exclude_from, is not needed in f20+
* Wed Jul 09 2014 Sergio Pascual <sergiopr@fedoraproject.org> - 0.10.1-1
- New upstream 0.10.1
* Thu Apr 18 2013 Sergio Pascual <sergiopr@fedoraproject.org> - 0.9.3-1
- Initial spec file
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