Update to 0.21.0

Use SPDX License
Enable tests
skivi was removed in 0.20.0, so dropped the scikit-image-tools package

.gitignore

@@ -17,3 +17,5 @@
 /scikit-image-0.18.3.tar.gz
 /scikit-image-0.19.2.tar.gz
 /scikit-image-0.19.3.tar.gz
+/scikit-image-0.21.0.tar.gz
+/scikit-image-data.tar.xz

python-scikit-image-version.patch

@@ -0,0 +1,12 @@
+diff -up scikit-image-0.21.0/meson.build.version scikit-image-0.21.0/meson.build
+--- scikit-image-0.21.0/meson.build.version	2023-06-01 20:12:41.000000000 -0600
++++ scikit-image-0.21.0/meson.build	2023-06-02 20:39:40.048765638 -0600
+@@ -4,7 +4,7 @@ project(
+   # Note that the git commit hash cannot be added dynamically here
+   # That only happens when importing from a git repository.
+   # See `skimage/__init__.py`
+-  version: run_command('skimage/_build_utils/version.py', check: true).stdout().strip(),
++  version: run_command('python3', 'skimage/_build_utils/version.py', check: true).stdout().strip(),
+   license: 'BSD-3',
+   meson_version: '>= 0.63.0',
+   default_options: [

python-scikit-image.spec

@@ -1,18 +1,21 @@
-%bcond_with check
+%bcond_without check
 
 %global srcname scikit-image
 
 Name: python-scikit-image
-Version: 0.19.3
+Version: 0.21.0
 Release: 1%{?dist}
 Summary: Image processing in Python
 # The following files are BSD 2 clauses, the rest BSD 3 clauses
 # skimage/graph/_mcp.pyx
 # skimage/graph/heap.pyx
-License: BSD
+License: BSD-2-Clause AND BSD-3-Clause
 
 URL: http://scikit-image.org/
-Source0: %{pypi_source}
+Source0: https://github.com/scikit-image/scikit-image/archive/v%{version}/%{srcname}-%{version}.tar.gz
+# Select extra test data - you can build the package locally and then run:
+# tar cJvf scikit-image-data.tar.xz -C scikit-image-0.21.0/scikit-image/0.21.0 .
+Source1: scikit-image-data.tar.xz
 
 BuildRequires: gcc gcc-c++
 BuildRequires: xorg-x11-server-Xvfb
@@ -26,85 +29,91 @@ versatile set of image processing routines.}
 %package -n python3-%{srcname}
 Summary: %{summary}
 BuildRequires: python3-devel
-BuildRequires: %{py3_dist setuptools}
+BuildRequires: python-unversioned-command
-BuildRequires: %{py3_dist Cython}
+BuildRequires: %{py3_dist meson-python}
+BuildRequires: %{py3_dist pip}
 BuildRequires: %{py3_dist numpy}
-BuildRequires: pythran
-%if %{with check}
-BuildRequires: %{py3_dist pytest}
 BuildRequires: %{py3_dist scipy}
-BuildRequires: %{py3_dist matplotlib}
 BuildRequires: %{py3_dist networkx}
 BuildRequires: %{py3_dist pillow}
 BuildRequires: %{py3_dist imageio}
 BuildRequires: %{py3_dist tifffile}
 BuildRequires: %{py3_dist PyWavelets}
-# Not in fedora:
+BuildRequires: %{py3_dist packaging}
-# pytest-localserver
+BuildRequires: %{py3_dist lazy_loader}
-# Pooch
+# optional-dependencies
+BuildRequires: %{py3_dist Cython}
+BuildRequires: pythran
+%if %{with check}
+BuildRequires: %{py3_dist pytest}
+BuildRequires: %{py3_dist pytest-localserver}
+BuildRequires: %{py3_dist matplotlib}
+BuildRequires: %{py3_dist pooch}
 %endif
+Obsoletes: %{srcname}-tools < 0.20.0
 
 %description -n python3-%{srcname} %_description
 
-%package -n %{srcname}-tools
-Summary: Scikit-image utility tools
-BuildArch: noarch
-Requires: python3-%{srcname} = %{version}-%{release}
-
-%description -n %{srcname}-tools
-Utilities provided by scikit-image: 'skivi'
-
 %prep
-%setup -n %{srcname}-%{version} -q
+%autosetup -n %{srcname}-%{version} -p1
-# Remove some shebangs
+# Extract test data - pooch looks for this path in XDG_CACHE_HOME
-pushd skimage
+mkdir -p scikit-image/%{version}
-for i in $(grep -l -r "/usr/bin/env"); do
+tar xf %SOURCE1 -C scikit-image/%{version}
-   sed -i -e '1d' $i;
+# Remove pinned numpy versions
-done
+sed -i -e '/numpy==/d' pyproject.toml
-popd
+# For regeneration of cython source
 rm -f $(grep -rl '/\* Generated by Cython')
 
+# This currently requires building the whole package with -w, which is just too expensive
+#generate_buildrequires
+#pyproject_buildrequires -t -w
+
 %build
-%py3_build
+%pyproject_wheel
 
 %install
-%py3_install
+%pyproject_install
-# This is also installed
+%pyproject_save_files skimage
-rm -rf %{buildroot}/%{python3_sitearch}/doc/
 
 %if %{with check}
 %check
 # Fake matplotlibrc
 mkdir -p matplotlib
 touch matplotlib/matplotlibrc
-export XDG_CONFIG_HOME=`pwd`
+# For test data
+export XDG_CACHE_HOME=$PWD
+export XDG_CONFIG_HOME=$PWD
 export PYTHONDONTWRITEBYTECODE=1
 export PYTEST_ADDOPTS='-p no:cacheprovider'
 pushd %{buildroot}/%{python3_sitearch}
-# We deselect tests that require network
+# We deselect tests that require network data
-# or packages not in Fedora
+ xvfb-run pytest -v \
-# require Pooch 
+  --deselect="skimage/data/tests/test_data.py::test_download_all_with_pooch" \
-# require pytest-localserver
+  --deselect="skimage/data/tests/test_data.py::test_eagle" \
- xvfb-run pytest \
+  --deselect="skimage/data/tests/test_data.py::test_brain_3d" \
-  --deselect="data/tests/test_data.py::test_skin"  \
+  --deselect="skimage/data/tests/test_data.py::test_cells_3d" \
-  --deselect "io/tests/test_collection.py::TestImageCollection::test_custom_load_func_w_kwarg" \
+  --deselect="skimage/data/tests/test_data.py::test_kidney_3d_multichannel" \
-  --deselect "restoration/tests/test_rolling_ball.py::test_ndim" \
+  --deselect="skimage/data/tests/test_data.py::test_lily_multichannel" \
-  --deselect="io/tests/test_io.py::test_imread_http_url"  \
+  --deselect="skimage/data/tests/test_data.py::test_skin" \
+  --deselect="skimage/data/tests/test_data.py::test_vortex" \
+  --deselect="skimage/measure/tests/test_blur_effect.py::test_blur_effect_3d" \
+  --deselect="skimage/registration/tests/test_masked_phase_cross_correlation.py::test_masked_registration_3d_contiguous_mask" \
  skimage
 popd
 %endif
 
-%files -n python3-%{srcname}
+%files -n python3-%{srcname} -f %{pyproject_files}
 %doc CONTRIBUTORS.txt RELEASE.txt
 %license LICENSE.txt
-%{python3_sitearch}/skimage
-%{python3_sitearch}/scikit_image-*.egg-info
-
-%files -n %{srcname}-tools
-%{_bindir}/skivi
 
 
 %changelog
+* Sat Jun 03 2023 Orion Poplawski <orion@nwra.com> - 0.21.0-1
+- Update to 0.21.0
+- Use SPDX License
+- Enable tests
+- skivi was removed in 0.20.0, so dropped the scikit-image-tools package
+
 * Sat Jun 03 2023 Orion Poplawski <orion@nwra.com> - 0.19.3-1
 - Update to 0.19.3
 

sources

@@ -1 +1,2 @@
-SHA512 (scikit-image-0.19.3.tar.gz) = cda1699200e19155da13e313eb129771b7bb895913e552b959a3374267fe4f73c33d5e6e2fa2d49326903c901925797e46b9f05342a78c5332df1c266d37471a
+SHA512 (scikit-image-0.21.0.tar.gz) = 3d289050e0d1c6a24f8625be8bf553ad29714d5265e485e42eae0b958c1d013bfda17d6565d2ad22ae258fea3d8d0a50379573bacf23128303d30ddd4a25cba1
+SHA512 (scikit-image-data.tar.xz) = cbf61d09ed0a34f8f8360ff42f23f25da41e863db7da178891230bea826cf632fda789707d6adee04aff889ae4d29a068c87a78c9da9544a511cd60f32d670e9