230 lines
7.9 KiB
RPMSpec
230 lines
7.9 KiB
RPMSpec
# Koji has two types of builders:
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# 16Gb + 6 cores
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# 128Gb + 48 cores
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# There's no way to choose either, so we rely on luck
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#
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# This needs about 15 gigs per thread, otherwise OOMs. So, we calculate the number of threads we can afford to use for make:
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# meminfo gives output in kB (1000 bytes)
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%global numthreads %(awk '/MemTotal:/ {print int($2/15e6)}' /proc/meminfo)
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# But make sure it is > 0
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%if 0%{numthreads} == 0
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%global numthreads 1
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%endif
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# If _smp_build_ncpus is not defined (on older rpms)
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# assume there's only one
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%if 0%{?_smp_build_ncpus} == 0
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%global _smp_build_ncpus 1
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%endif
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# Use the smaller number of threads
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%if 0%{numthreads} > 0%{?_smp_build_ncpus}
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%global numthreads %{?_smp_build_ncpus}
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%endif
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%global modname graph-tool
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%global pymodname graph_tool
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# Builds fail with LTO
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%global _lto_cflags %{nil}
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%global _description %{expand:
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Graph-tool is an efficient Python module for manipulation and statistical
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analysis of graphs (a.k.a. networks). Contrary to most other python modules
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with similar functionality, the core data structures and algorithms are
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implemented in C++, making extensive use of template metaprogramming, based
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heavily on the Boost Graph Library. This confers it a level of performance that
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is comparable (both in memory usage and computation time) to that of a pure
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C/C++ library.
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Please refer to https://graph-tool.skewed.de/static/doc/index.html for
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documentation.}
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Name: python-%{modname}
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Version: 2.43
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Release: %autorelease
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Summary: Efficient network analysis tool written in Python
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License: LGPLv3+
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URL: https://graph-tool.skewed.de/
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Source0: https://downloads.skewed.de/%{modname}/%{modname}-%{version}.tar.bz2
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# Remove the compilation flags upstream sets
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Patch0: 0001-remove-upstream-compilation-flags.patch
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# Need to reduce debugging symbols to make compiling possible on these
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# architectures at all. See:
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# https://lists.fedoraproject.org/archives/list/devel@lists.fedoraproject.org/message/GIBNORLNGSUHAMX6PZ7XUPQ2SQUK7AX4/
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#
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# Works around:
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# Fails on armv7hl:
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# virtual memory exhausted
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# https://bugzilla.redhat.com/show_bug.cgi?id=1771024
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# Fails on ppc64le:
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# note: variable tracking size limit exceeded with
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# '-fvar-tracking-assignments', retrying without
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# https://bugzilla.redhat.com/show_bug.cgi?id=1771031
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# Fails on s390x:
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# note: variable tracking size limit exceeded with
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# '-fvar-tracking-assignments', retrying without
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# https://bugzilla.redhat.com/show_bug.cgi?id=1771034
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%ifarch armv7hl ppc64le s390x
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%global optflags %(echo %{optflags} | sed 's/-g /-g1 /')
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%endif
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# Fails on i686, armv7hl
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# ../../../src/pcg-cpp/include/pcg_random.hpp:1247:40: error: call to
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# non-'constexpr' function 'pcg_extras::uint_x4<U, V>
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# pcg_extras::operator-(const pcg_extras::uint_x4<U, V>&, const
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# pcg_extras::uint_x4<U, V>&) [with UInt = unsigned int; UIntX2 = long
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# long unsigned int]'
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# 1247 | (state_type(1U) << table_pow2) - state_type(1U);
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# | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
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# In file included from ../../../src/pcg-cpp/include/pcg_extras.hpp:84,
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# from ../../../src/pcg-cpp/include/pcg_random.hpp:114,
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# from ../../../src/graph/random.hh:21,
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# from graph_motifs.hh:26,
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# from graph_motifs.cc:24:
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# ../../../src/pcg-cpp/include/pcg_uint128.hpp:642:22: note:
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# 'pcg_extras::uint_x4<U, V> pcg_extras::operator-(const
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# pcg_extras::uint_x4<U, V>&, const pcg_extras::uint_x4<U, V>&) [with
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# UInt = unsigned int; UIntX2 = long long unsigned int]' declared here
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# 642 | uint_x4<UInt,UIntX2> operator-(const uint_x4<UInt,UIntX2>& a,
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# | ^~~~~~~~
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# issue filed: https://git.skewed.de/count0/graph-tool/issues/617
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# https://bugzilla.redhat.com/show_bug.cgi?id=1771023
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# https://bugzilla.redhat.com/show_bug.cgi?id=1771024
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#
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# Fails on ppc64le:
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# /usr/include/boost/math/tools/promotion.hpp:138:10:
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# error: static assertion failed:
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# Sorry, but this platform does not have sufficient long double support for
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# the special functions to be reliably implemented.
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# https://bugzilla.redhat.com/show_bug.cgi?id=1771031
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#
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# Takes ~23 hours on x86_64 if we get unlucky and get a 6 core 16gig machine,
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# ~4 hours if we get a 48 core 128gig machine
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# Takes ~45 hours on aarch64
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ExcludeArch: %{ix86} armv7hl ppc64le
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BuildRequires: make
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BuildRequires: git-core
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BuildRequires: autoconf
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BuildRequires: automake
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BuildRequires: libtool
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BuildRequires: gawk
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%description %_description
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%package -n python3-%{modname}
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Summary: %{summary}
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BuildRequires: python3-devel
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BuildRequires: boost-devel
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BuildRequires: boost-python3-devel
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BuildRequires: CGAL-devel
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# CGAL is header-only since version 5.4.0, so we must BR the virtual -static
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# subpackage for tracking, per Fedora guidelines
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BuildRequires: CGAL-static
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BuildRequires: pkgconfig(cairomm-1.0)
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BuildRequires: expat-devel
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BuildRequires: gcc-c++
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BuildRequires: gmp-devel
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BuildRequires: gtk3-devel
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BuildRequires: python3-cairo-devel
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BuildRequires: python3-devel
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BuildRequires: %{py3_dist scipy}
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BuildRequires: %{py3_dist matplotlib}
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BuildRequires: %{py3_dist numpy}
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BuildRequires: sparsehash-devel
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# BR -static package of header-only libraries for tracking per guidelines
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BuildRequires: pcg-cpp-devel
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BuildRequires: pcg-cpp-static
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Provides: graph-tool%{?_isa} = %{version}-%{release}
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%description -n python3-%{modname} %_description
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%package -n python3-%{modname}-devel
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Summary: %{summary}
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Requires: python3-%{modname}%{?_isa} = %{version}-%{release}
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# Since this header-only package is re-exposed as part of the extension API,
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# dependent packages should ideally also BuildRequire pcg-cpp-static for
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# tracking, per guidelines.
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Requires: pcg-cpp-devel
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Provides: graph-tool-devel%{?_isa} = %{version}-%{release}
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%description -n python3-%{modname}-devel %_description
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%prep
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%autosetup -S git -n %{modname}-%{version}
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# Remove shebangs from non-script sources
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#
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# The pattern of selecting files before modifying them with sed keeps us from
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# unnecessarily discarding the original mtimes on unmodified files.
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find 'src' -type f -name '*.py' \
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-exec gawk '/^#!/ { print FILENAME }; { nextfile }' '{}' '+' |
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xargs -r sed -r -i '1{/^#!/d}'
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# Fix shebang(s) in sample script(s)
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%py3_shebang_fix doc
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# Unbundle pcg-cpp. To avoid having to patch the Makefiles, we use symbolic
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# links from the original locations. Note that these are followed when the
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# extension API headers are installed, so we need to re-create them afterwards.
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rm -vf src/pcg-cpp/include/*
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ln -sv \
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'%{_includedir}/pcg_extras.hpp' \
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'%{_includedir}/pcg_random.hpp' \
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'%{_includedir}/pcg_uint128.hpp' \
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'src/pcg-cpp/include/'
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# Drop intersphinx mappings, since we can’t download remote inventories and
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# can’t easily produce working hyperlinks from inventories in local
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# documentation packages.
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echo 'intersphinx_mapping.clear()' >> doc/conf.py
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%build
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./autogen.sh
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%configure --with-python-module-path=%{python3_sitearch} --with-boost-libdir=%{_libdir} --enable-debug
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echo "Building with %{numthreads} of %{?_smp_build_ncpus} available CPUs"
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# Uses the latest value set by -j
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%make_build -j%{numthreads}
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%install
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%make_install
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# Remove installed doc sources
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rm -rf %{buildroot}/%{_datadir}/doc/%{modname}
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# Remove static objects
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find %{buildroot} -name '*.la' -print -delete
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# Restore symbolic links that were followed in “wheelification”
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ln -svf \
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'%{_includedir}/pcg_extras.hpp' \
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'%{_includedir}/pcg_random.hpp' \
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'%{_includedir}/pcg_uint128.hpp' \
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'%{buildroot}%{python3_sitearch}/%{pymodname}/include/pcg-cpp/'
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%files -n python3-%{modname}
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%license COPYING
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%doc README.md ChangeLog AUTHORS
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%{python3_sitearch}/%{pymodname}
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%exclude %{python3_sitearch}/%{pymodname}/include
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%files -n python3-%{modname}-devel
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%{python3_sitearch}/%{pymodname}/include
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%{_libdir}/pkgconfig/%{modname}-py%{python3_version}.pc
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%changelog
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%autochangelog
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