Use MPI variables
This commit is contained in:
sagitter
parent
9af9a19adf
commit
722a325d89
120
petsc.spec
120
petsc.spec
@ -34,7 +34,7 @@
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%endif
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## blas is not available on fedora 24
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%if 0%{?fedora} < 25
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%if 0%{?fedora} && 0%{?fedora} < 25
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ExcludeArch: aarch64
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%endif
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@ -50,6 +50,11 @@ ExcludeArch: aarch64
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%endif
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#
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## SuperLUDIST needs parmetis
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%bcond_with superludist
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%bcond_with superlumt
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#
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# hdf5' is required by 'cgns'
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# hdf5 needs MPI
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%if 0%{?fedora} || 0%{?rhel} >= 7
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@ -130,7 +135,7 @@ ExcludeArch: aarch64
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Name: petsc
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Summary: Portable Extensible Toolkit for Scientific Computation
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Version: 3.7.6
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Release: 6%{?dist}
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Release: 7%{?dist}
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License: BSD
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URL: https://www.mcs.anl.gov/petsc
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Source0: http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-%{version}.tar.gz
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@ -150,6 +155,9 @@ Patch3: %{name}-disable_petscnagupgrade.patch
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%if %{with superlu}
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BuildRequires: SuperLU-devel
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%endif
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%if %{with superlumt}
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BuildRequires: SuperLUMT-devel
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%endif
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%if %{with sundials}
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BuildRequires: sundials-devel
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%endif
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@ -257,6 +265,9 @@ BuildRequires: MUMPS-openmpi-devel
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%if %{with sundials}
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BuildRequires: sundials-openmpi-devel
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%endif
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%if %{with superludist}
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BuildRequires: superlu_dist-openmpi-devel
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%endif
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%if %{with fftw}
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BuildRequires: fftw-devel
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BuildRequires: fftw-openmpi-devel
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@ -312,6 +323,9 @@ BuildRequires: MUMPS-mpich-devel
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%if %{with sundials}
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BuildRequires: sundials-mpich-devel
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%endif
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%if %{with superludist}
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BuildRequires: superlu_dist-mpich-devel
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%endif
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%if %{with hypre}
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BuildRequires: hypre-mpich-devel
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%endif
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@ -531,9 +545,9 @@ pushd buildopenmpi_dir
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--with-64-bit-indices=0 \
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--with-fortran-interfaces=1 \
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--with-windows-graphics=0 \
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--CC=%{_libdir}/openmpi/bin/mpicc \
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--CXX=%{_libdir}/openmpi/bin/mpicxx \
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--FC=%{_libdir}/openmpi/bin/mpif77 \
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--CC=$MPI_BIN/mpicc \
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--CXX=$MPI_BIN/mpicxx \
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--FC=$MPI_BIN/mpif77 \
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--with-shared-ld=ld \
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--with-pic=1 \
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--with-clib-autodetect=0 \
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@ -559,39 +573,44 @@ pushd buildopenmpi_dir
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%endif
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%if %{with scalapack}
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--with-scalapack=1 \
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--with-scalapack-lib="-L%{_libmpidir} -lscalapack" \
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--with-scalapack-lib="-L$MPI_LIB -lscalapack" \
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--with-scalapck-include="" \
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%endif
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%if %{with mpi}
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--with-mpi=1 \
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--with-mpi-compilers=%{_libdir}/openmpi/bin/mpicc \
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--with-mpiexec=%{_libdir}/openmpi/bin/mpiexec \
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--with-mpi-compilers=$MPI_BIN/mpicc \
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--with-mpiexec=$MPI_BIN/mpiexec \
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--with-mpiuni-fortran-binding=0 \
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%endif
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%if %{with cgns}
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--with-cgns=1 \
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--with-cgns-include="" \
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--with-cgns-lib="-L%{_libmpidir} -lhdf5 -lcgns" \
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--with-cgns-lib="-L$MPI_LIB -lhdf5 -lcgns" \
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%endif
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%if %{with hdf5}
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--with-hdf5=1 \
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--with-hdf5-include="" \
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--with-hdf5-lib="-L%{_libmpidir} -lhdf5" \
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--with-hdf5-lib="-L$MPI_LIB -lhdf5" \
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%endif
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%if %{with ptscotch}
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--with-ptscotch=1 \
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--with-ptscotch-include="" \
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--with-ptscotch-lib="-L%{_libmpidir} -lptscotch -lscotch -lptscotcherr -lscotcherr" \
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--with-ptscotch-lib="-L$MPI_LIB -lptscotch -lscotch -lptscotcherr -lscotcherr" \
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%endif
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%if %{with mumps}
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--with-mumps=1 \
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--with-mumps-include="" \
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--with-mumps-lib="-L%{_libmpidir} -lmumps_common -ldmumps -lpord" \
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--with-mumps-lib="-L$MPI_LIB -lmumps_common -ldmumps -lpord" \
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%endif
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%if %{with sundials}
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--with-sundials=1 \
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--with-sundials-include="" \
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--with-sundials-lib="-L%{_libmpidir} -lsundials_nvecparallel -lsundials_cvode" \
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--with-sundials-lib="-L$MPI_LIB -lsundials_nvecparallel -lsundials_cvode" \
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%endif
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%if %{with superludist}
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--with-superlu_dist=1 \
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--with-superlu_dist-include=$MPI_INCLUDE/superlu_dist \
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--with-superlu_dist-lib=-lsuperlu_dist \
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%endif
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--with-x=1 \
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--with-openmp=0 \
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@ -600,13 +619,13 @@ pushd buildopenmpi_dir
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--with-ssl=0 \
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%if %{with hypre}
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--with-hypre=1 \
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--with-hypre-include=%{_incmpidir}/hypre \
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--with-hypre-lib="-L%{_libmpidir} -lHYPRE" \
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--with-hypre-include=$MPI_INCLUDE/hypre \
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--with-hypre-lib="-L$MPI_LIB -lHYPRE" \
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%endif
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%if %{with fftw}
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--with-fftw=1 \
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--with-fftw-include="" \
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--with-fftw-lib="-L%{_libmpidir} -lfftw3_mpi -lfftw3" \
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--with-fftw-lib="-L$MPI_LIB -lfftw3_mpi -lfftw3" \
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%endif
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--with-pthread=1 \
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--with-valgrind=1
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@ -632,9 +651,9 @@ pushd buildmpich_dir
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--with-64-bit-indices=0 \
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--with-fortran-interfaces=1 \
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--with-windows-graphics=0 \
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--CC=%{_libdir}/mpich/bin/mpicc \
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--CXX=%{_libdir}/mpich/bin/mpicxx \
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--FC=%{_libdir}/mpich/bin/mpif77 \
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--CC=$MPI_BIN/mpicc \
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--CXX=$MPI_BIN/mpicxx \
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--FC=$MPI_BIN/mpif77 \
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--with-shared-ld=ld \
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--with-pic=1 \
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--with-clib-autodetect=0 \
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@ -660,39 +679,44 @@ pushd buildmpich_dir
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%endif
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%if %{with scalapack}
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--with-scalapack=1 \
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--with-scalapack-lib="-L%{_libmpichdir} -lscalapack" \
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--with-scalapack-lib="-L$MPI_LIB -lscalapack" \
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--with-scalapck-include="" \
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%endif
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%if %{with mpi}
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--with-mpi=1 \
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--with-mpi-compilers=%{_libdir}/mpich/bin/mpicc \
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--with-mpiexec=%{_libdir}/mpich/bin/mpiexec \
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--with-mpi-compilers=$MPI_BIN/mpicc \
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--with-mpiexec=$MPI_BIN/mpiexec \
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--with-mpiuni-fortran-binding=0 \
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%endif
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%if %{with cgns}
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--with-cgns=1 \
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--with-cgns-include="" \
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--with-cgns-lib="-L%{_libmpichdir} -lhdf5 -lcgns" \
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--with-cgns-lib="-L$MPI_LIB -lhdf5 -lcgns" \
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%endif
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%if %{with hdf5}
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--with-hdf5=1 \
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--with-hdf5-include="" \
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--with-hdf5-lib="-L%{_libmpichdir} -lhdf5" \
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--with-hdf5-lib="-L$MPI_LIB -lhdf5" \
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%endif
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%if %{with ptscotch}
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--with-ptscotch=1 \
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--with-ptscotch-include="" \
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--with-ptscotch-lib="-L%{_libmpichdir} -lptscotch -lscotch -lptscotcherr -lscotcherr" \
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--with-ptscotch-lib="-L$MPI_LIB -lptscotch -lscotch -lptscotcherr -lscotcherr" \
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%endif
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%if %{with mumps}
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--with-mumps=1 \
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--with-mumps-include="" \
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--with-mumps-lib="-L%{_libmpichdir} -lmumps_common -ldmumps -lpord" \
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--with-mumps-lib="-L$MPI_LIB -lmumps_common -ldmumps -lpord" \
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%endif
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%if %{with sundials}
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--with-sundials=1 \
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--with-sundials-include="" \
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--with-sundials-lib="-L%{_libmpichdir} -lsundials_nvecparallel -lsundials_cvode" \
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--with-sundials-lib="-L$MPI_LIB -lsundials_nvecparallel -lsundials_cvode" \
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%endif
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%if %{with superludist}
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--with-superlu_dist=1 \
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--with-superlu_dist-include=$MPI_INCLUDE/superlu_dist \
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--with-superlu_dist-lib=-lsuperlu_dist \
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%endif
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--with-x=1 \
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--with-openmp=0 \
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@ -701,13 +725,13 @@ pushd buildmpich_dir
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--with-ssl=0 \
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%if %{with hypre}
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--with-hypre=1 \
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--with-hypre-include=%{_incmpichdir}/hypre \
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--with-hypre-lib="-L%{_libmpichdir} -lHYPRE" \
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--with-hypre-include=$MPI_INCLUDE/hypre \
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--with-hypre-lib="-L$MPI_LIB -lHYPRE" \
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%endif
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%if %{with fftw}
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--with-fftw=1 \
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--with-fftw-include="" \
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--with-fftw-lib="-L%{_libmpichdir} -lfftw3_mpi -lfftw3" \
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--with-fftw-lib="-L$MPI_LIB -lfftw3_mpi -lfftw3" \
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%endif
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--with-pthread=1 \
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--with-valgrind=1
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@ -808,27 +832,31 @@ EOF
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%if %{with openmpi}
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pushd buildopenmpi_dir
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mkdir -p $RPM_BUILD_ROOT%{_libmpidir} $RPM_BUILD_ROOT%{_incmpidir}/%{name}
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%{_openmpi_load}
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mkdir -p $RPM_BUILD_ROOT$MPI_LIB $RPM_BUILD_ROOT$MPI_INCLUDE/%{name}
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install -pm 755 %{_arch}/lib/libpetsc.* $RPM_BUILD_ROOT%{_libmpidir}
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ln -sf libpetsc.so.%{version} $RPM_BUILD_ROOT%{_libmpidir}/libpetsc.so
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ln -sf libpetsc.so.%{version} $RPM_BUILD_ROOT%{_libmpidir}/libpetsc.so.3.7
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install -pm 755 %{_arch}/lib/libpetsc.* $RPM_BUILD_ROOT$MPI_LIB
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ln -sf libpetsc.so.%{version} $RPM_BUILD_ROOT$MPI_LIB/libpetsc.so
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ln -sf libpetsc.so.%{version} $RPM_BUILD_ROOT$MPI_LIB/libpetsc.so.3.7
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install -pm 644 %{_arch}/include/*.h $RPM_BUILD_ROOT%{_incmpidir}/%{name}
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cp -a include/* $RPM_BUILD_ROOT%{_incmpidir}/%{name}
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install -pm 644 %{_arch}/include/*.h $RPM_BUILD_ROOT$MPI_INCLUDE/%{name}
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cp -a include/* $RPM_BUILD_ROOT$MPI_INCLUDE/%{name}
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%{_openmpi_unload}
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popd
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%endif
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%if %{with mpich}
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pushd buildmpich_dir
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mkdir -p $RPM_BUILD_ROOT%{_libmpichdir} $RPM_BUILD_ROOT%{_incmpichdir}/%{name}
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%{_mpich_load}
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mkdir -p $RPM_BUILD_ROOT$MPI_LIB $RPM_BUILD_ROOT$MPI_INCLUDE/%{name}
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install -pm 755 %{_arch}/lib/libpetsc.* $RPM_BUILD_ROOT%{_libmpichdir}
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ln -sf libpetsc.so.%{version} $RPM_BUILD_ROOT%{_libmpichdir}/libpetsc.so
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ln -sf libpetsc.so.%{version} $RPM_BUILD_ROOT%{_libmpichdir}/libpetsc.so.3.7
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install -pm 755 %{_arch}/lib/libpetsc.* $RPM_BUILD_ROOT$MPI_LIB
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ln -sf libpetsc.so.%{version} $RPM_BUILD_ROOT$MPI_LIB/libpetsc.so
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ln -sf libpetsc.so.%{version} $RPM_BUILD_ROOT$MPI_LIB/libpetsc.so.3.7
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install -pm 644 %{_arch}/include/*.h $RPM_BUILD_ROOT%{_incmpichdir}/%{name}
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cp -a include/* $RPM_BUILD_ROOT%{_incmpichdir}/%{name}
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install -pm 644 %{_arch}/include/*.h $RPM_BUILD_ROOT$MPI_INCLUDE/%{name}
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cp -a include/* $RPM_BUILD_ROOT$MPI_INCLUDE/%{name}
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%{_mpich_unload}
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popd
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%endif
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@ -889,7 +917,7 @@ make -C build64 test
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%if %{with openmpi}
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%{_openmpi_load}
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export LD_LIBRARY_PATH=%{_libmpidir}:%{_libdir}:%{_builddir}/%{name}-%{version}/buildopenmpi_dir/%{_arch}/lib
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export LD_LIBRARY_PATH=$MPI_LIB:%{_libdir}:%{_builddir}/%{name}-%{version}/buildopenmpi_dir/%{_arch}/lib
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export PETSC_DIR=%{_builddir}/%{name}-%{version}/buildopenmpi_dir
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export PETSC_ARCH=%{_arch}
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export MPI_INTERFACE_HOSTNAME=localhost
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@ -901,7 +929,7 @@ make -C buildopenmpi_dir test
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%if 0%{?fedora} || 0%{?rhel} >= 7
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%if %{with mpich}
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%{_mpich_load}
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export LD_LIBRARY_PATH=%{_libmpichdir}:%{_libdir}:%{_builddir}/%{name}-%{version}/buildmpich_dir/%{_arch}/lib
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export LD_LIBRARY_PATH=$MPI_LIB:%{_libdir}:%{_builddir}/%{name}-%{version}/buildmpich_dir/%{_arch}/lib
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export PETSC_DIR=%{_builddir}/%{name}-%{version}/buildmpich_dir
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export PETSC_ARCH=%{_arch}
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export MPI_INTERFACE_HOSTNAME=localhost
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@ -959,6 +987,10 @@ make -C buildmpich_dir test
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%endif
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%changelog
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* Sun Aug 13 2017 Antonio Trande <sagitter@fedoraproject.org> - 3.7.6-7
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- Superlu_dist needs parmetis
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- Use MPI variables
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* Thu Aug 03 2017 Fedora Release Engineering <releng@fedoraproject.org> - 3.7.6-6
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
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