Properly check valgrind arches

Signed-off-by: David Abdurachmanov <davidlt@rivosinc.com>

.gitignore

@@ -52,3 +52,14 @@ openmpi-1.4.1-RH.tar.bz2
 /openmpi-4.0.3.tar.bz2
 /openmpi-4.0.4rc1.tar.bz2
 /openmpi-4.0.4.tar.bz2
+/openmpi-4.0.5.tar.bz2
+/openmpi-4.1.0.tar.bz2
+/openmpi-4.1.1rc1.tar.bz2
+/openmpi-4.1.1rc2.tar.bz2
+/openmpi-4.1.1.tar.bz2
+/openmpi-4.1.2rc1.tar.bz2
+/openmpi-4.1.2.tar.bz2
+/openmpi-4.1.3.tar.bz2
+/openmpi-4.1.4.tar.bz2
+/openmpi-4.1.5.tar.bz2
+/openmpi-5.0.0.tar.bz2

macros.openmpi

@@ -1,7 +1,7 @@
 %_openmpi_load \
  . /etc/profile.d/modules.sh; \
  module load mpi/openmpi-%{_arch}; \
- export OMPI_MCA_rmaps_base_oversubscribe=1
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
 %_openmpi_unload \
  . /etc/profile.d/modules.sh; \
  module unload mpi/openmpi-%{_arch};

openmpi.module.in

@@ -6,6 +6,7 @@ conflict		mpi
 prepend-path 		PATH 		@LIBDIR@/bin
 prepend-path 		LD_LIBRARY_PATH @LIBDIR@/lib
 prepend-path 		PKG_CONFIG_PATH	@LIBDIR@/lib/pkgconfig
+prepend-path 		CMAKE_PREFIX_PATH	@LIBDIR@
 prepend-path		MANPATH		:@MANDIR@
 setenv 			MPI_BIN		@LIBDIR@/bin
 setenv			MPI_SYSCONFIG	@ETCDIR@

openmpi.spec

@@ -1,17 +1,3 @@
-%global _hardened_build 1
-# We only compile with gcc, but other people may want other compilers.
-# Set the compiler here.
-%global opt_cc gcc
-# Optional CFLAGS to use with the specific compiler...gcc doesn't need any,
-# so uncomment and define to use
-#global opt_cflags
-%global opt_cxx g++
-#global opt_cxxflags
-%global opt_f77 gfortran
-#global opt_fflags
-%global opt_fc gfortran
-#global opt_fcflags
-
 # Optional name suffix to use...we leave it off when compiling with gcc, but
 # for other compiled versions to install side by side, it will need a
 # suffix in order to keep the names from conflicting.
@@ -39,15 +25,53 @@
 %bcond_without rdma
 %endif
 
+# No more Java on i686
+%ifarch %{java_arches}
+%bcond_without java
+%else
+%bcond_with java
+%endif
+
+%if %{defined rhel}
+%bcond_with orangefs
+%bcond_with sphinx
+%else
+%bcond_without orangefs
+%bcond_without sphinx
+%endif
+
+%ifarch x86_64
+%if 0%{?rhel} >= 8
+%bcond_with psm
+%else
+%bcond_without psm
+%endif
+%if 0%{?rhel} >= 10
+%bcond_with psm2
+%else
+%bcond_without psm2
+%endif
+%else
+%bcond_with psm
+%bcond_with psm2
+%endif
+
+# Some RCs require unreleased pmix version - at least let us test builds
+%bcond_without pmix
+
+# Run autogen - needed for some patches
+%bcond_with autogen
+
 Name:           openmpi%{?_cc_name_suffix}
-Version:         4.0.4
+Version:        5.0.0
-Release:         1%{?dist}
+Release:        2.0.riscv64%{?dist}
 Summary:        Open Message Passing Interface
 License:        BSD and MIT and Romio
 URL:            http://www.open-mpi.org/
+ExcludeArch:    %{ix86}
 
 # We can't use %%{name} here because of _cc_name_suffix
-Source0:         https://www.open-mpi.org/software/ompi/v4.0/downloads/openmpi-%{version}.tar.bz2
+Source0:        https://www.open-mpi.org/software/ompi/v5.0/downloads/openmpi-%{version}.tar.bz2
 Source1:        openmpi.module.in
 Source2:        openmpi.pth.py2
 Source3:        openmpi.pth.py3
@@ -55,7 +79,15 @@ Source4:         macros.openmpi
 
 BuildRequires:  gcc-c++
 BuildRequires:  gcc-gfortran
+BuildRequires:  make
+%if %{with autogen}
+BuildRequires:  libtool
+BuildRequires:  perl(Data::Dumper)
+BuildRequires:  perl(File::Find)
+%endif
+%ifarch %{valgrind_arches}
 BuildRequires:  valgrind-devel
+%endif
 %if %{with rdma}
 BuildRequires:  opensm-devel > 3.3.0
 BuildRequires:  rdma-core-devel
@@ -67,23 +99,37 @@ BuildRequires:   rdma-core-devel
 BuildRequires:  hwloc-devel
 # So configure can find lstopo
 BuildRequires:  hwloc-gui
+%if %{with java}
 BuildRequires:  java-devel
+%else
+Obsoletes:      %{name}-java < %{version}-%{release}
+Obsoletes:      %{name}-java-devel < %{version}-%{release}
+%endif
 # Old libevent causes issues
 %if !0%{?el7}
 BuildRequires:  libevent-devel
 %endif
 BuildRequires:  libfabric-devel
-%ifnarch s390 s390x
+%ifnarch s390x
 BuildRequires:  papi-devel
 %endif
+%if %{with orangefs}
 BuildRequires:  orangefs-devel
+%endif
 BuildRequires:  perl-generators
 BuildRequires:  perl-interpreter
 BuildRequires:  perl(Getopt::Long)
-BuildRequires:   pmix-devel
+%if %{with pmix}
+BuildRequires:  pmix-devel >= 4.2.7
+%endif
+# For configure to find /usr/bin/prte
+BuildRequires:  prrte
+BuildRequires:  prrte-devel
 BuildRequires:  python%{python3_pkgversion}-devel
-%ifarch x86_64
+%if %{with psm}
 BuildRequires:  infinipath-psm-devel
+%endif
+%if %{with psm2}
 BuildRequires:  libpsm2-devel
 %endif
 %if %{with ucx}
@@ -93,13 +139,20 @@ BuildRequires:   zlib-devel
 %if !0%{?el7}
 BuildRequires:  rpm-mpi-hooks
 %endif
+%if %{with sphinx}
+# For docs
+BuildRequires:  /usr/bin/sphinx-build
+BuildRequires:  python3-recommonmark
+BuildRequires:  python3-sphinx_rtd_theme
+%endif
 
 Provides:       mpi
-%if 0%{?rhel}
+%if 0%{?rhel} == 7
 # Need this for /etc/profile.d/modules.sh
 Requires:       environment-modules
 %endif
 Requires:       environment(modules)
+Requires:       prrte
 # openmpi currently requires ssh to run
 # https://svn.open-mpi.org/trac/ompi/ticket/4228
 Requires:       openssh-clients
@@ -132,6 +185,14 @@ Requires:	(python(abi) = %{python3_version} if python3)
 %description devel
 Contains development headers and libraries for openmpi.
 
+%package doc
+Summary:        HTML documentation for openmpi
+BuildArch:      noarch
+
+%description doc
+HTML documentation for openmpi.
+
+%if %{with java}
 %package java
 Summary:        Java library
 Requires:       %{name} = %{version}-%{release}
@@ -147,6 +208,7 @@ Requires:   java-devel
 
 %description java-devel
 Contains development wrapper for compiling Java with openmpi.
+%endif
 
 # We set this to for convenience, since this is the unique dir we use for this
 # particular package, version, compiler
@@ -173,32 +235,41 @@ OpenMPI support for Python 3.
 
 
 %prep
-%autosetup -p1
+%autosetup -p1 -n %{name}-%{version}
+%if %{with autogen}
+./autogen.pl --force
+%endif
+
 
 %build
+%set_build_flags
 ./configure --prefix=%{_libdir}/%{name} \
 	--mandir=%{_mandir}/%{namearch} \
 	--includedir=%{_includedir}/%{namearch} \
 	--sysconfdir=%{_sysconfdir}/%{namearch} \
 	--disable-silent-rules \
 	--enable-builtin-atomics \
-	--enable-mpi-cxx \
+	--enable-ipv6 \
+%if %{with java}
 	--enable-mpi-java \
+%endif
 	--enable-mpi1-compatibility \
+%if %{with sphinx}
+	--enable-sphinx \
+%endif
+	--with-prrte=external \
 	--with-sge \
+%ifarch %{valgrind_arches}
 	--with-valgrind \
 	--enable-memchecker \
+%endif
 	--with-hwloc=/usr \
 %if !0%{?el7}
 	--with-libevent=external \
+%if %{with pmix}
 	--with-pmix=external \
 %endif
-	CC=%{opt_cc} CXX=%{opt_cxx} \
+%endif
-	LDFLAGS='%{__global_ldflags}' \
-	CFLAGS="%{?opt_cflags} %{!?opt_cflags:$RPM_OPT_FLAGS}" \
-	CXXFLAGS="%{?opt_cxxflags} %{!?opt_cxxflags:$RPM_OPT_FLAGS}" \
-	FC=%{opt_fc} FCFLAGS="%{?opt_fcflags} %{!?opt_fcflags:$RPM_OPT_FLAGS}"
-#        --with-contrib-vt-flags='CXXFLAGS="-I%{_includedir}/dyninst -L%{_libdir}/dyninst"' \
 
 %make_build V=1
 
@@ -206,10 +277,6 @@ OpenMPI support for Python 3.
 %make_install
 find %{buildroot}%{_libdir}/%{name}/lib -name \*.la | xargs rm
 find %{buildroot}%{_mandir}/%{namearch} -type f | xargs gzip -9
-ln -s mpicc.1.gz %{buildroot}%{_mandir}/%{namearch}/man1/mpiCC.1.gz
-# Remove dangling symlink
-rm %{buildroot}%{_mandir}/%{namearch}/man1/mpiCC.1
-mkdir %{buildroot}%{_mandir}/%{namearch}/man{2,4,5,6,8,9,n}
 
 # Make the environment-modules file
 mkdir -p %{buildroot}%{_datadir}/modulefiles/mpi
@@ -247,6 +314,13 @@ cd %{buildroot}%{_libdir}/pkgconfig
 ln -s ../%{name}/lib/pkgconfig/*.pc .
 cd -
 
+# Create cmake dir
+mkdir -p %{buildroot}%{_libdir}/%{name}/lib/cmake/
+
+# Create directories for OpenMPI packages with development files
+mkdir -p %{buildroot}%{_libdir}/%{name}/lib/openmpi/cmake
+mkdir -p %{buildroot}%{_libdir}/%{name}/include
+
 # Remove extraneous wrapper link libraries (bug 814798)
 sed -i -e s/-ldl// -e s/-lhwloc// \
   %{buildroot}%{_libdir}/%{name}/share/openmpi/*-wrapper-data.txt
@@ -260,7 +334,12 @@ mkdir -p %{buildroot}/%{python3_sitearch}/%{name}
 install -pDm0644 %{SOURCE3} %{buildroot}/%{python3_sitearch}/openmpi.pth
 
 %check
-make check
+fail=1
+# Failing on s390x - https://github.com/open-mpi/ompi/issues/10988
+%ifarch s390x
+fail=0
+%endif
+make check || ( cat test/*/test-suite.log && exit $fail )
 
 %files
 %license LICENSE
@@ -269,57 +348,61 @@ make check
 %dir %{_libdir}/%{name}/bin
 %dir %{_libdir}/%{name}/lib
 %dir %{_libdir}/%{name}/lib/openmpi
+%dir %{_libdir}/%{name}/lib/openmpi/cmake
+%dir %{_libdir}/%{name}/include
 %dir %{_mandir}/%{namearch}
 %dir %{_mandir}/%{namearch}/man*
 %config(noreplace) %{_sysconfdir}/%{namearch}/*
 %{_libdir}/%{name}/bin/mpi[er]*
 %{_libdir}/%{name}/bin/ompi*
-%{_libdir}/%{name}/bin/orte[-dr_]*
 %if %{with ucx}
 %{_libdir}/%{name}/bin/oshmem_info
-%{_libdir}/%{name}/bin/oshrun
-%{_libdir}/%{name}/bin/shmemrun
 %endif
+%{_libdir}/%{name}/bin/oshrun
+%if %{without pmix}
+%{_libdir}/%{name}/bin/pattrs
+%{_libdir}/%{name}/bin/pctrl
+%{_libdir}/%{name}/bin/pevent
+%{_libdir}/%{name}/bin/plookup
+%{_libdir}/%{name}/bin/pmix_info
+%{_libdir}/%{name}/bin/pmixcc
+%{_libdir}/%{name}/bin/pps
+%{_libdir}/%{name}/bin/pquery
+%{_libdir}/%{name}/lib/libpmix.so.2*
+%{_libdir}/%{name}/lib/pmix/
+%{_libdir}/%{name}/share/pmix/
+%{_mandir}/%{namearch}/man1/pmix_info.1*
+%{_mandir}/%{namearch}/man5/openpmix.5*
+%endif
+%{_mandir}/%{namearch}/man7/Open-MPI.7*
 %{_libdir}/%{name}/lib/*.so.40*
-%{_libdir}/%{name}/lib/libmca*.so.41*
+%{_libdir}/%{name}/lib/*.so.80*
-%{_libdir}/%{name}/lib/libmca*.so.50*
 %if 0%{?el7}
 %{_libdir}/%{name}/lib/pmix/
 %endif
-%{_mandir}/%{namearch}/man1/mpi[er]*
+%{_mandir}/%{namearch}/man1/mpirun.1*
+%{_mandir}/%{namearch}/man1/mpisync.1*
 %{_mandir}/%{namearch}/man1/ompi*
-%{_mandir}/%{namearch}/man1/orte[-dr_]*
 %if %{with ucx}
 %{_mandir}/%{namearch}/man1/oshmem_info*
-%{_mandir}/%{namearch}/man1/oshrun*
-%{_mandir}/%{namearch}/man1/shmemrun*
 %endif
-%{_mandir}/%{namearch}/man7/ompi_*
-%{_mandir}/%{namearch}/man7/opal_*
-%{_mandir}/%{namearch}/man7/orte*
 %{_libdir}/%{name}/lib/openmpi/*
 %{_datadir}/modulefiles/mpi/
 %dir %{_libdir}/%{name}/share
 %dir %{_libdir}/%{name}/share/openmpi
 %{_libdir}/%{name}/share/openmpi/amca-param-sets
 %{_libdir}/%{name}/share/openmpi/help*.txt
-%if %{with rdma}
-%{_libdir}/%{name}/share/openmpi/mca-btl-openib-device-params.ini
-%endif
 %if 0%{?el7}
 %{_libdir}/%{name}/share/pmix/
 %endif
 
 %files devel
 %dir %{_includedir}/%{namearch}
-%{_libdir}/%{name}/bin/aggregate_profile.pl
 %{_libdir}/%{name}/bin/mpi[cCf]*
 %{_libdir}/%{name}/bin/opal_*
-%{_libdir}/%{name}/bin/orte[cCf]*
 %if %{with ucx}
 %{_libdir}/%{name}/bin/osh[cCf]*
 %endif
-%{_libdir}/%{name}/bin/profile2mat.pl
 %if %{with ucx}
 %{_libdir}/%{name}/bin/shmem[cCf]*
 %endif
@@ -327,11 +410,13 @@ make check
 %{_fmoddir}/%{name}/
 %{_libdir}/%{name}/lib/*.so
 %{_libdir}/%{name}/lib/*.mod
+%{_libdir}/%{name}/lib/cmake/
 %{_libdir}/%{name}/lib/pkgconfig/
 %{_libdir}/pkgconfig/*.pc
 %{_mandir}/%{namearch}/man1/mpi[cCf]*
 %if %{with ucx}
 %{_mandir}/%{namearch}/man1/osh[cCf]*
+%{_mandir}/%{namearch}/man1/oshmem-wrapper-compiler.1*
 %{_mandir}/%{namearch}/man1/shmem[cCf]*
 %endif
 %{_mandir}/%{namearch}/man1/opal_*
@@ -340,15 +425,21 @@ make check
 %{_libdir}/%{name}/share/openmpi/*-wrapper-data.txt
 %{macrosdir}/macros.%{namearch}
 
+%files doc
+%license LICENSE
+%doc %{_libdir}/%{name}/share/doc/
+%exclude %{_libdir}/%{name}/share/doc/openmpi/javadoc-openmpi
+
+%if %{with java}
 %files java
 %{_libdir}/%{name}/lib/mpi.jar
 
 %files java-devel
 %{_libdir}/%{name}/bin/mpijavac
 %{_libdir}/%{name}/bin/mpijavac.pl
-# Currently this only contaings openmpi/javadoc
+%doc %{_libdir}/%{name}/share/doc/openmpi/javadoc-openmpi
-%{_libdir}/%{name}/share/doc/
 %{_mandir}/%{namearch}/man1/mpijavac.1.gz
+%endif
 
 %if %{with python2}
 %files -n python2-openmpi
@@ -362,6 +453,127 @@ make check
 
 
 %changelog
+* Mon Nov 06 2023 David Abdurachmanov <davidlt@rivosinc.com> - 5.0.0-2.0.riscv64
+- Add support for riscv64
+
+* Tue Oct 31 2023 Yaakov Selkowitz <yselkowi@redhat.com> - 5.0.0-2
+- Disable building docs in RHEL builds
+
+* Fri Oct 27 2023 Orion Poplawski <orion@nwra.com> - 5.0.0-1
+- Update to 5.0.0
+- Drops 32-bit i686 support
+- Drops C++ bindings
+- Add doc sub-package
+
+* Thu Oct 12 2023 Cristian Le <fedora@lecris.me> - 4.1.5-8
+- Added CMAKE_PREFIX_PATH to module file
+
+* Sat Sep 30 2023 Benson Muite <benson_muite@emailplus.org> - 4.1.5-7
+- Add include and cmake directories for development files for OpenMPI packages
+
+* Fri Sep 22 2023 Orion Poplawski <orion@nwra.com> - 4.1.5-6
+- Rebuild for pmix 4.1.3 (bz#2240042)
+
+* Thu Jul 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 4.1.5-5
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
+
+* Mon Jul 10 2023 Yaakov Selkowitz <yselkowi@redhat.com> - 4.1.5-4
+- Disable PSM2 in RHEL 10 builds
+
+* Thu Jun 22 2023 Yaakov Selkowitz <yselkowi@redhat.com> - 4.1.5-3
+- Disable PSM, OrangeFS in RHEL builds
+
+* Tue Jun 13 2023 Python Maint <python-maint@redhat.com> - 4.1.5-2
+- Rebuilt for Python 3.12
+
+* Sun Feb 26 2023 Orion Poplawski <orion@nwra.com> - 4.1.5-1
+- Update to 4.1.5
+
+* Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 4.1.4-8
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
+
+* Fri Nov 11 2022 Orion Poplawski <orion@nwra.com> - 4.1.4-7
+- Re-enable IPv6 support - was not the issue
+
+* Fri Nov 11 2022 Orion Poplawski <orion@nwra.com> - 4.1.4-6
+- Disable IPv6 support - appears to break MPI_Init() on koji builders (bz#2141137)
+
+* Fri Aug 19 2022 Davide Cavalca <dcavalca@fedoraproject.org> - 4.1.4-5
+- Enable IPv6 support (bz#2119845)
+
+* Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 4.1.4-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
+
+* Sun Jul 10 2022 Orion Poplawski <orion@nwra.com> - 4.1.4-3
+- Drop java for i686 (bz#2104085)
+
+* Mon Jun 13 2022 Python Maint <python-maint@redhat.com> - 4.1.4-2
+- Rebuilt for Python 3.11
+
+* Sun May 29 2022 Orion Poplawski <orion@nwra.com> - 4.1.4-1
+- Update to 4.1.4
+
+* Sat Apr 16 2022 Orion Poplawski <orion@nwra.com> - 4.1.3-1
+- Update to 4.1.3
+
+* Sat Feb 05 2022 Jiri Vanek <jvanek@redhat.com> - 4.1.2-3
+- Rebuilt for java-17-openjdk as system jdk
+
+* Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 4.1.2-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
+
+* Mon Nov 29 2021 Orion Poplawski <orion@nwra.com> - 4.1.2-1
+- Update to 4.1.2
+
+* Sun Oct 10 2021 Orion Poplawski <orion@nwra.com> - 4.1.2-0.1.rc1
+- Update to 4.1.2rc1
+
+* Fri Sep 03 2021 Sandro Mani <manisandro@gmail.com> - 4.1.1-4
+- Also own %%{_libdir}/%%{name}/lib/cmake/
+
+* Thu Jul 22 2021 Fedora Release Engineering <releng@fedoraproject.org> - 4.1.1-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
+
+* Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 4.1.1-2
+- Rebuilt for Python 3.10
+
+* Tue Apr 27 2021 Orion Poplawski <orion@nwra.com> - 4.1.1-1
+- Update to 4.1.1
+
+* Mon Apr 05 2021 Orion Poplawski <orion@nwra.com> - 4.1.1-0.2.rc2
+- Update to 4.1.1rc2
+
+* Thu Feb 11 2021 Orion Poplawski <orion@nwra.com> - 4.1.1-0.1.rc1
+- Update to 4.1.1rc1
+
+* Thu Jan 28 2021 Orion Poplawski <orion@nwra.com> - 4.1.0-5
+- Add upstream patch for generalized requests
+
+* Thu Jan 28 2021 Orion Poplawski <orion@nwra.com> - 4.1.0-4
+- Add upstream patch to fix AVX library linkage
+
+* Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 4.1.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
+
+* Sun Jan 24 2021 Orion Poplawski <orion@nwra.com> - 4.1.0-2
+- Use set_build_flags macro
+- Drop old opt_ macros
+
+* Sun Jan 24 2021 Orion Poplawski <orion@nwra.com> - 4.1.0-1
+- Update to 4.1.0
+
+* Wed Sep 23 2020 Orion Poplawski <orion@nwra.com> - 4.0.5-2
+- Rebuild for libevent 2.1.12
+
+* Wed Sep 02 2020 Orion Poplawski <orion@nwra.com> - 4.0.5-1
+- Update to 4.0.5
+
+* Tue Jul 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 4.0.4-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
+
+* Sat Jul 11 2020 Jiri Vanek <jvanek@redhat.com> - 4.0.4-2
+- Rebuilt for JDK-11, see https://fedoraproject.org/wiki/Changes/Java11
+
 * Wed Jun 17 2020 Orion Poplawski <orion@nwra.com> - 4.0.4-1
 - Update to 4.0.4
 

sources

@@ -1 +1 @@
-SHA512 (openmpi-4.0.4.tar.bz2) = 6c193b4b5cbfd9d48fa5efcef01372c424b51ae5e9727ccf4235e3b14556dfeb010865e41a9473419ccda16559139aa469086b1fff9abfd337e87387fdec1c64
+SHA512 (openmpi-5.0.0.tar.bz2) = 29fa7d8d91c19d5ced867d4194da53c78dee775ad3d6ea6063a0609e2829799b06dc4603d165ab7cab045f645a0962d30774c8c05020b28da548c6cad55e82e6