- fixed broken update
- Resolves: bz496909, bz496131, bz496911
This commit is contained in:
Doug Ledford
parent
e500ef7605
commit
fa6ba230eb
@ -1,11 +0,0 @@
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--- openmpi-1.2.4/orte/runtime/orte_abort.c.open 2007-10-17 14:47:28.000000000 -0400
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+++ openmpi-1.2.4/orte/runtime/orte_abort.c 2007-10-17 14:53:23.000000000 -0400
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@@ -88,7 +88,7 @@ int orte_abort(int status, bool report)
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ORTE_ERROR_LOG(ORTE_ERR_OUT_OF_RESOURCE);
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goto CLEANUP;
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}
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- fd = open(abort_file, O_CREAT);
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+ fd = open(abort_file, O_WRONLY, O_CREAT);
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if (0 < fd) close(fd);
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}
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@ -2,8 +2,7 @@
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#
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# OpenMPI module for use with 'environment-modules' package:
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#
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prepend-path MANPATH @DATADIR@/@MPIDIR@/man
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prepend-path PATH @DATADIR@/@MPIDIR@/bin@MODE@
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prepend-path LD_LIBRARY_PATH @LIBDIR@/@MPIDIR@
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setenv CFLAGS -I@INCLUDEDIR@/@MPIDIR@ -I@INCLUDEDIR@/@MPIDIR@/@NAME@ -I@INCLUDEDIR@/@MPIDIR@/@MODE@ @MODEFLAG@
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setenv LDFLAGS -L@LIBDIR@/@MPIDIR@ -lmpi
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prepend-path PATH @LIBDIR@/@MPIDIR@/bin
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prepend-path LD_LIBRARY_PATH @LIBDIR@/@MPIDIR@/lib
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setenv CFLAGS -I@LIBDIR@/@MPIDIR@/include @MODEFLAG@
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setenv LDFLAGS -L@LIBDIR@/@MPIDIR@/lib -lmpi
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@ -2,6 +2,6 @@
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Name: @NAME@
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Description: Open Message Passing Interface headers and libraries
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URL: http://www.open-mpi.org/
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Version: @VERSION@-@CC@-@MODE@
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Libs: -L@LIBDIR@/@MPIDIR@ -lmpi
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Cflags: -I@INCLUDEDIR@/@MPIDIR@ -I@INCLUDEDIR@/@MPIDIR@/@NAME@ -I@INCLUDEDIR@/@MPIDIR@/@MODE@ @MODEFLAG@
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Version: @VERSION@-@CC@
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Libs: -L@LIBDIR@/@MPIDIR@/lib -lmpi
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Cflags: -I@LIBDIR@/@MPIDIR@/include @MODEFLAG@
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323
openmpi.spec
323
openmpi.spec
@ -1,6 +1,24 @@
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Name: openmpi
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# We only compile with gcc, but other people may want other compilers.
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# Set the compiler here.
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%define opt_cc gcc
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# Optional CFLAGS to use with the specific compiler...gcc doesn't need any,
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# so uncomment and define to use
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#define opt_cflags
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%define opt_cxx g++
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#define opt_cxxflags
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%define opt_f77 gfortran
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#define opt_fflags
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%define opt_fc gfortran
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#define opt_fcflags
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# Optional name suffix to use...we leave it off when compiling with gcc, but
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# for other compiled versions to install side by side, it will need a
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# suffix in order to keep the names from conflicting.
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#define cc_name_suffix -gcc
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Name: openmpi%{?cc_name_suffix}
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Version: 1.3.1
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Release: 1%{?dist}
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Release: 2%{?dist}
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Summary: Open Message Passing Interface
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Group: Development/Libraries
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License: BSD
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@ -9,15 +27,14 @@ Source0: http://www.open-mpi.org/software/ompi/v1.3/downloads/%{name}-%{version
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Source1: openmpi.pc.in
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Source2: openmpi.module.in
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BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
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BuildRequires: gcc-gfortran, libtool, numactl-devel, libtorque-devel
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#BuildRequires: libibverbs-devel, opensm-devel
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BuildRequires: gcc-gfortran, libtool, numactl-devel
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BuildRequires: libibverbs-devel, opensm-devel > 3.3.0
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#%ifnarch ppc
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#BuildRequires: dapl-devel
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#BuildRequires: compat-dapl-devel
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#%endif
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Requires(post): /sbin/ldconfig
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Requires(post): %{_sbindir}/update-alternatives
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Requires(preun): %{_sbindir}/update-alternatives
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Requires: %{name}-libs = %{version}-%{release}
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Provides: mpi
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Requires: environment-modules
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Obsoletes: openmpi-libs, openmpi-devel
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%description
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Open MPI is an open source, freely available implementation of both the
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@ -28,49 +45,6 @@ compliant implementation, Open MPI offers advantages for system and
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software vendors, application developers, and computer science
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researchers. For more information, see http://www.open-mpi.org/ .
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%package libs
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Summary: Libraries used by openmpi programs
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Group: Development/Libraries
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Requires(post): %{_sbindir}/update-alternatives
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Requires(preun): %{_sbindir}/update-alternatives
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%description libs
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Contains shared libraries used by openmpi applications.
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%package devel
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Summary: Development files for openmpi
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Group: Development/Libraries
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Requires: %{name}-libs = %{version}-%{release}
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Provides: mpi-devel = %{version}-%{release}
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Requires(post): %{_sbindir}/update-alternatives
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Requires(preun): %{_sbindir}/update-alternatives
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%description devel
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Contains development headers and libraries for openmpi.
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%package vt
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Summary: VampirTrace versions of openmpi programs
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Group: Development/Libraries
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Requires: %{name}-libs = %{version}-%{release}
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%description vt
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VampirTrace consists of a tool set and a run-time library for instrumentation
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and tracing of software applications. In particular, it is tailored towards
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parallel and distributed High Performance Computing (HPC) applications.
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The instrumentation part modifies a given application in order to inject
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additional measurement calls during run-time. The tracing part provides the
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actual measurement functionality used by the instrumentation calls. By this
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means, a variety of detailed performance properties can be collected and
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recorded during run-time. This package contains the openmpi programs
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with VampirTrace enabled.
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# We only compile with gcc, but other people may want other compilers.
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# Set the compiler here.
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%define opt_cc gcc
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# Optional CFLAGS to use with the specific compiler...gcc doesn't need any,
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# so uncomment and define to use
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#define opt_cc_cflags
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# When dealing with multilib installations, aka the ability to run either
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# i386 or x86_64 binaries on x86_64 machines, we install the native i386
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# openmpi libs/compilers and the native x86_64 libs/compilers. Obviously,
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@ -93,249 +67,80 @@ with VampirTrace enabled.
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%ifarch ia64
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%define mode 64
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%endif
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%ifarch s390
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%define mode 31
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%endif
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%ifarch s390x
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%define mode 64
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%endif
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%ifarch x86_64 ppc64 sparc64
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%define mode 64
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%define modeflag -m64
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%endif
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# That alternatives system selects the highest priority item as the default.
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# Usually, that means 64bit preferred over 32bit on multilib, but ppc is an
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# exception in that 32bit is preferred over 64bit. So, the priority values
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# selected here make that happen.
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%ifarch i386 ppc64 s390 sparc64
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%define priority 10
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%else
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%define priority 11
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%endif
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# We set this to for convenience, since this is the unique dir we use for this
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# particular package, version, compiler
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%define mpidir %{name}/%{version}-%{opt_cc}
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%prep
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%setup -q
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%ifarch x86_64
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XFLAGS="-fPIC"
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%endif
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%configure \
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--includedir=%{_includedir}/%{mpidir} \
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--libdir=%{_libdir}/%{mpidir} \
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--datadir=%{_datadir}/%{mpidir}/help%{mode} \
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--mandir=%{_datadir}/%{mpidir}/man \
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--with-threads=posix \
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--with-tm \
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CC=%{opt_cc} \
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./configure --prefix=%{_libdir}/%{mpidir} --with-libnuma=/usr \
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--with-openib=/usr --enable-mpirun-prefix-by-default \
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--mandir=%{_libdir}/%{mpidir}/man \
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CC=%{opt_cc} CXX=%{opt_cxx} \
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LDFLAGS='-Wl,-z,noexecstack' \
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CFLAGS="%{?opt_cc_cflags} $RPM_OPT_FLAGS $XFLAGS" \
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CXXFLAGS="$RPM_OPT_FLAGS $XFLAGS" \
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FFLAGS="$RPM_OPT_FLAGS $XFLAGS";
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# ${datadir}/openmpi will be used ONLY for the english help*.txt files
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CFLAGS="%{?opt_cflags} $RPM_OPT_FLAGS $XFLAGS" \
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CXXFLAGS="%{?opt_cxxflags} $RPM_OPT_FLAGS $XFLAGS" \
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FC=%{opt_fc} FCFLAGS="%{?opt_fcflags} $RPM_OPT_FLAGS $XFLAGS" \
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F77=%{opt_f77} FFLAGS="%{?opt_fflags} $RPM_OPT_FLAGS $XFLAGS"
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%build
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make %{?_smp_mflags}
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%install
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rm -rf ${RPM_BUILD_ROOT}
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make install DESTDIR=${RPM_BUILD_ROOT}
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rm -rf %{buildroot}
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make install DESTDIR=%{buildroot}
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find %{buildroot}%{_libdir}/%{mpidir}/lib -name \*.la | xargs rm
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find %{buildroot}%{_libdir}/%{mpidir}/man -type f | xargs gzip -9
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ln -s mpicc.1.gz %{buildroot}%{_libdir}/%{mpidir}/man/man1/mpiCC.1.gz
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rm -f %{buildroot}%{_libdir}/%{mpidir}/man/man1/mpiCC.1
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# Because no package owns the base openmpi directories, the install sets
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# the mode wrong. This will cause problems when the first copy of openmpi
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# is installed on a system. Correct the directory permissions here.
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chmod 755 ${RPM_BUILD_ROOT}/%{_libdir}/openmpi
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chmod 755 ${RPM_BUILD_ROOT}/%{_includedir}/openmpi
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chmod 755 ${RPM_BUILD_ROOT}/%{_datadir}/openmpi
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# Make the pkgconfig file
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mkdir -p %{buildroot}%{_libdir}/pkgconfig
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sed 's#@NAME@#'%{name}'#g;s#@VERSION@#'%{version}'#g;s#@LIBDIR@#'%{_libdir}'#g;s#@CC@#'%{opt_cc}'#g;s#@MPIDIR@#'%{mpidir}'#g;s#@MODEFLAG@#'%{?modeflag}'#g' < %SOURCE1 > %{buildroot}/%{_libdir}/pkgconfig/%{name}-%{version}-%{opt_cc}.pc
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# Make the environment-modules file
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mkdir -p %{buildroot}%{_datadir}/Modules/modulefiles
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sed 's#@LIBDIR@#'%{_libdir}'#g;s#@MPIDIR@#'%{mpidir}'#g;s#@MODEFLAG@#'%{?modeflag}'#g' < %SOURCE2 > %{buildroot}/%{_datadir}/Modules/modulefiles/%{name}-%{version}-%{opt_cc}-%{_arch}.module
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# Remove the symlinks from common names to the unique name in /usr/bin too
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rm ${RPM_BUILD_ROOT}%{_bindir}/mpi*
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# Move the wrapper program to a name that denotes the mode it compiles
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mv ${RPM_BUILD_ROOT}%{_bindir}/opal_wrapper{,-%{version}-%{opt_cc}-%{mode}}
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# But, opal_wrapper needs to be called by a name that denotes the compiler
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# type in order to work, so in order to leave it functional even when it isn't
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# the currently selected system wide default via the alternatives program,
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# make the proper symlinks from %{_datadir}/%{name}/bin to the wrapper
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mkdir -p ${RPM_BUILD_ROOT}%{_datadir}/%{mpidir}/bin%{mode}
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for i in mpicc mpic++ mpicxx mpiCC mpif77 mpif90 ; do
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ln -s %{_bindir}/opal_wrapper-%{version}-%{opt_cc}-%{mode} \
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${RPM_BUILD_ROOT}%{_datadir}/%{mpidir}/bin%{mode}/$i
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done
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# The fortran include file differs between 32/64bit environments, so make
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# two copies
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mkdir -p ${RPM_BUILD_ROOT}%{_includedir}/%{mpidir}/%{mode}
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mv ${RPM_BUILD_ROOT}%{_includedir}/%{mpidir}/{mpif-config.h,%{mode}}
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# and have the wrapper include the right one by using the wrapper-data.txt
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# files for the fortran modes to signal the extra include dir
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for i in ${RPM_BUILD_ROOT}%{_datadir}/%{mpidir}/help%{mode}/openmpi/mpif{77,90}-wrapper-data.txt; do
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sed -e 's#extra_includes=#extra_includes='%{mode}' #' < $i > $i.out
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mv $i.out $i
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done
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# and we also need to force the compile mode via the wrapper-data.txt files
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# we need to force the compile mode via the wrapper-data.txt files
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||||
# (except on ia64 where the -m64 flag is not allowed by gcc)
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%ifnarch ia64
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||||
for i in ${RPM_BUILD_ROOT}%{_datadir}/%{mpidir}/help%{mode}/openmpi/*wrapper-data.txt; do
|
||||
for i in %{buildroot}%{_libdir}/%{mpidir}/share/openmpi/*wrapper-data.txt
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||||
do
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||||
sed -e 's#compiler_flags=#compiler_flags='%{?modeflag}' #' < $i > $i.out
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mv $i.out $i
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||||
done
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||||
%endif
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||||
|
||||
echo %{_libdir}/%{mpidir} > ${RPM_BUILD_ROOT}%{_libdir}/%{mpidir}/%{name}.ld.conf
|
||||
# Make the pkgconfig files
|
||||
mkdir -p ${RPM_BUILD_ROOT}%{_libdir}/pkgconfig;
|
||||
sed 's#@NAME@#'%{name}'#g;s#@VERSION@#'%{version}'#g;s#@LIBDIR@#'%{_libdir}'#g;s#@INCLUDEDIR@#'%{_includedir}'#g;s#@MODE@#'%{mode}'#g;s#@CC@#'%{opt_cc}'#g;s#@MPIDIR@#'%{mpidir}'#g;s#@MODEFLAG@#'%{?modeflag}'#g' < %SOURCE1 > ${RPM_BUILD_ROOT}/%{_libdir}/pkgconfig/%{name}-%{version}-%{opt_cc}-%{mode}.pc;
|
||||
sed 's#@NAME@#'%{name}'#g;s#@VERSION@#'%{version}'#g;s#@LIBDIR@#'%{_libdir}'#g;s#@INCLUDEDIR@#'%{_includedir}'#g;s#@DATADIR@#'%{_datadir}'#g;s#@MODE@#'%{mode}'#g;s#@CC@#'%{opt_cc}'#g;s#@MPIDIR@#'%{mpidir}'#g;s#@MODEFLAG@#'%{?modeflag}'#g' < %SOURCE2 > ${RPM_BUILD_ROOT}/%{_libdir}/%{mpidir}/%{name}.module;
|
||||
|
||||
# Ghost files for alternatives
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||||
touch ${RPM_BUILD_ROOT}%{_bindir}/mpirun
|
||||
touch ${RPM_BUILD_ROOT}%{_bindir}/mpiexec
|
||||
mkdir -p ${RPM_BUILD_ROOT}%{_mandir}/man1/
|
||||
touch ${RPM_BUILD_ROOT}%{_mandir}/man1/mpirun.1.gz
|
||||
touch ${RPM_BUILD_ROOT}%{_mandir}/man1/mpiexec.1.gz
|
||||
mkdir -p ${RPM_BUILD_ROOT}%{_sysconfdir}/ld.so.conf.d/
|
||||
touch ${RPM_BUILD_ROOT}%{_sysconfdir}/ld.so.conf.d/mpi%{mode}.conf
|
||||
touch ${RPM_BUILD_ROOT}%{_bindir}/mpicc
|
||||
touch ${RPM_BUILD_ROOT}%{_bindir}/mpic++
|
||||
touch ${RPM_BUILD_ROOT}%{_bindir}/mpiCC
|
||||
touch ${RPM_BUILD_ROOT}%{_bindir}/mpicxx
|
||||
touch ${RPM_BUILD_ROOT}%{_bindir}/mpif77
|
||||
touch ${RPM_BUILD_ROOT}%{_bindir}/mpif90
|
||||
|
||||
# Clean up static libs
|
||||
rm -rf ${RPM_BUILD_ROOT}%{_libdir}/%{mpidir}/*.a
|
||||
|
||||
# This file is corrupt, don't try to package it.
|
||||
rm -rf ${RPM_BUILD_ROOT}%{_datadir}/vampirtrace/doc/opari/lacsi01.ps.gz
|
||||
|
||||
# Clean up long names
|
||||
pushd ${RPM_BUILD_ROOT}%{_bindir}
|
||||
for i in otfaux otfcompress otfconfig otfdump otfmerge; do
|
||||
ln -s %{_arch}-redhat-linux-gnu-$i $i;
|
||||
done
|
||||
popd
|
||||
|
||||
%clean
|
||||
[ ! -z "${RPM_BUILD_ROOT}" ] && rm -rf ${RPM_BUILD_ROOT}
|
||||
|
||||
%post
|
||||
%{_sbindir}/update-alternatives --install %{_bindir}/mpirun mpi-run %{_bindir}/orterun \
|
||||
%{priority} \
|
||||
--slave %{_bindir}/mpiexec mpi-exec %{_bindir}/orterun \
|
||||
--slave %{_mandir}/man1/mpirun.1.gz mpi-run-man \
|
||||
%{_datadir}/%{mpidir}/man/man1/mpirun.1.gz \
|
||||
--slave %{_mandir}/man1/mpiexec.1.gz mpi-exec-man \
|
||||
%{_datadir}/%{mpidir}/man/man1/orterun.1.gz
|
||||
|
||||
%preun
|
||||
if [ $1 -eq 0 ] ; then
|
||||
%{_sbindir}/update-alternatives --remove mpi-run %{_bindir}/orterun
|
||||
fi
|
||||
|
||||
|
||||
%post libs
|
||||
%{_sbindir}/update-alternatives --install %{_sysconfdir}/ld.so.conf.d/mpi%{mode}.conf \
|
||||
mpilibs%{mode} %{_libdir}/%{mpidir}/%{name}.ld.conf %{priority}
|
||||
/sbin/ldconfig
|
||||
|
||||
%preun libs
|
||||
if [ $1 -eq 0 ] ; then
|
||||
%{_sbindir}/update-alternatives --remove mpilibs%{mode} %{_libdir}/%{mpidir}/%{name}.ld.conf
|
||||
fi
|
||||
|
||||
%postun libs -p /sbin/ldconfig
|
||||
|
||||
%post devel
|
||||
%{_sbindir}/update-alternatives --install %{_bindir}/mpicc mpicc \
|
||||
%{_bindir}/opal_wrapper-%{version}-%{opt_cc}-%{mode} \
|
||||
%{priority} \
|
||||
--slave %{_bindir}/mpic++ mpic++ \
|
||||
%{_bindir}/opal_wrapper-%{version}-%{opt_cc}-%{mode} \
|
||||
--slave %{_bindir}/mpiCC mpiCC \
|
||||
%{_bindir}/opal_wrapper-%{version}-%{opt_cc}-%{mode} \
|
||||
--slave %{_bindir}/mpicxx mpicxx \
|
||||
%{_bindir}/opal_wrapper-%{version}-%{opt_cc}-%{mode} \
|
||||
--slave %{_bindir}/mpif77 mpif77 \
|
||||
%{_bindir}/opal_wrapper-%{version}-%{opt_cc}-%{mode} \
|
||||
--slave %{_bindir}/mpif90 mpif90 \
|
||||
%{_bindir}/opal_wrapper-%{version}-%{opt_cc}-%{mode}
|
||||
|
||||
%preun devel
|
||||
if [ $1 -eq 0 ] ; then
|
||||
%{_sbindir}/update-alternatives --remove mpicc %{_bindir}/opal_wrapper-%{version}-%{opt_cc}-%{mode}
|
||||
fi
|
||||
|
||||
%postun devel -p /sbin/ldconfig
|
||||
rm -rf %{buildroot}
|
||||
|
||||
%files
|
||||
%defattr(-,root,root,-)
|
||||
%doc LICENSE README
|
||||
%config(noreplace) %{_sysconfdir}/openmpi-*
|
||||
%dir %{_datadir}/%{mpidir}
|
||||
%{_bindir}/ompi-clean
|
||||
%{_bindir}/ompi-ps
|
||||
%{_bindir}/ompi-server
|
||||
%{_bindir}/opari
|
||||
%{_bindir}/orte-clean
|
||||
%{_bindir}/orte-iof
|
||||
%{_bindir}/orte-ps
|
||||
%{_bindir}/orted
|
||||
%{_bindir}/orterun
|
||||
%{_bindir}/ompi_info
|
||||
%{_bindir}/*otf*
|
||||
%ghost %{_bindir}/mpirun
|
||||
%ghost %{_bindir}/mpiexec
|
||||
%ghost %{_mandir}/man1/mpirun.1.gz
|
||||
%ghost %{_mandir}/man1/mpiexec.1.gz
|
||||
%{_datadir}/%{mpidir}/*
|
||||
%exclude %{_datadir}/%{mpidir}/bin%{mode}
|
||||
%exclude %{_datadir}/%{mpidir}/help%{mode}/openmpi/*-wrapper-data.txt
|
||||
%exclude %{_datadir}/%{mpidir}/man/man3
|
||||
|
||||
%files libs
|
||||
%defattr(-,root,root,-)
|
||||
%dir %{_libdir}/%{mpidir}
|
||||
%dir %{_libdir}/%{mpidir}/%{name}
|
||||
%ghost %{_sysconfdir}/ld.so.conf.d/mpi%{mode}.conf
|
||||
%{_libdir}/%{mpidir}/*.so.*
|
||||
%{_libdir}/%{mpidir}/%{name}/*.so
|
||||
%{_libdir}/%{mpidir}/*.conf
|
||||
|
||||
%files devel
|
||||
%defattr(-,root,root,-)
|
||||
%{_bindir}/opal_wrapper-%{version}-%{opt_cc}-%{mode}
|
||||
%ghost %{_bindir}/mpicc
|
||||
%ghost %{_bindir}/mpic++
|
||||
%ghost %{_bindir}/mpiCC
|
||||
%ghost %{_bindir}/mpicxx
|
||||
%ghost %{_bindir}/mpif77
|
||||
%ghost %{_bindir}/mpif90
|
||||
%{_datadir}/%{mpidir}/bin%{mode}/
|
||||
%{_datadir}/%{mpidir}/help%{mode}/openmpi/*-wrapper-data.txt
|
||||
%{_includedir}/%{mpidir}/
|
||||
%{_datadir}/%{mpidir}/man/man3/
|
||||
%{_libdir}/%{mpidir}/*.so
|
||||
%{_libdir}/%{mpidir}/*.la
|
||||
%{_libdir}/%{mpidir}/%{name}/*.la
|
||||
%{_libdir}/pkgconfig/%{name}-%{version}-%{opt_cc}-%{mode}.pc
|
||||
%{_libdir}/%{mpidir}/*.mod
|
||||
%{_libdir}/%{mpidir}/*.module
|
||||
|
||||
%files vt
|
||||
%defattr(-,root,root,-)
|
||||
%{_bindir}/vtcc
|
||||
%{_bindir}/vtcxx
|
||||
%{_bindir}/vtf77
|
||||
%{_bindir}/vtf90
|
||||
%{_bindir}/vtfilter
|
||||
%{_bindir}/vtunify
|
||||
%{_datadir}/vampirtrace/
|
||||
|
||||
%dir %{_libdir}/%{mpidir}/etc
|
||||
%config(noreplace) %{_libdir}/%{mpidir}/etc/*
|
||||
%{_libdir}/%{mpidir}/bin
|
||||
%{_libdir}/%{mpidir}/include
|
||||
%{_libdir}/%{mpidir}/lib
|
||||
%{_libdir}/%{mpidir}/man
|
||||
%{_libdir}/%{mpidir}/share
|
||||
%{_libdir}/pkgconfig/%{name}-%{version}-%{opt_cc}.pc
|
||||
%{_datadir}/Modules/modulefiles/*
|
||||
|
||||
%changelog
|
||||
* Wed Apr 22 2009 Doug Ledford <dledford@redhat.com> - 1.3.1-2
|
||||
- fixed broken update
|
||||
- Resolves: bz496909, bz496131, bz496911
|
||||
|
||||
* Tue Apr 14 2009 Tom "spot" Callaway <tcallawa@redhat.com> - 1.3.1-1
|
||||
- update to 1.3.1, cleanup alternatives, spec, make new vt subpackage
|
||||
|
||||
|
||||
Loading…
Reference in New Issue
Block a user