Patched for rhbz#2105259

openbabel-3.1.1-bug2493.patch

@@ -0,0 +1,36 @@
+From c0570bfeb2d7e0a6a6de1f257cf28e7f3cac8739 Mon Sep 17 00:00:00 2001
+From: Sam James <sam@gentoo.org>
+Date: Sun, 12 Jun 2022 11:23:59 +0100
+Subject: [PATCH] CMake: fix time check typo (fixes build failure w/ GCC 12)
+MIME-Version: 1.0
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+
+Without this fixed check, we get a build failure with GCC 12:
+```
+/var/tmp/portage/sci-chemistry/openbabel-3.1.1_p20210225/work/openbabel-08e23f39b0cc39b4eebd937a5a2ffc1a7bac3e1b/include/openbabel/obutil.h:65:14: error: ‘clock’ was not declared in this scope; did you mean ‘clock_t’?
+   65 |       start= clock();
+      |              ^~~~~
+      |              clock_t
+```
+
+Bug: https://bugs.gentoo.org/851510
+---
+ src/config.h.cmake | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/src/config.h.cmake b/src/config.h.cmake
+index 1c59c67699..26e5dde94f 100644
+--- a/src/config.h.cmake
++++ b/src/config.h.cmake
+@@ -182,8 +182,8 @@
+ #define OB_MODULE_PATH "@OB_MODULE_PATH@"
+ 
+ #ifndef TIME_WITH_SYS_TIME
+-  #ifdef HAVE_SYS_TIME
+-    #ifdef HAVE_TIME
++  #ifdef HAVE_SYS_TIME_H
++    #ifdef HAVE_TIME_H
+       #define TIME_WITH_SYS_TIME 1
+     #else
+       #define TIME_WITH_SYS_TIME 0

openbabel.spec

@@ -5,7 +5,7 @@
 
 Name: openbabel
 Version: 3.1.1
-Release: 8%{?dist}
+Release: 9%{?dist}
 Summary: Chemistry software file format converter
 License: GPLv2
 URL: https://openbabel.org/
@@ -17,31 +17,32 @@ Source2: openbabel-inchi-license-lgpl-2.1.txt
 Patch0: %{name}-perl.patch
 
 # fix plugin directory location (#680292, patch by lg)
-Patch1: openbabel-plugindir.patch
+Patch1: %{name}-plugindir.patch
 
 # fix SWIG_init even when not using swig (#772149)
-Patch2: openbabel-noswig-rubymethod.patch
+Patch2: %{name}-noswig-rubymethod.patch
 
 # On F-17, directory for C ruby files changed to use vendorarch directory
-Patch3: openbabel-ruby19-vendorarch.patch
+Patch3: %{name}-ruby19-vendorarch.patch
 
 # temporarily disable some tests on:
 # - ppc64 and s390(x) to unblock other builds (#1108103)
 # - ARM (#1094491)
 # - aarch64 (#1094513)
 # Upstream bugs: https://sourceforge.net/p/openbabel/bugs/927/ https://sourceforge.net/p/openbabel/bugs/945/
-Patch4: openbabel-disable-tests.patch
+Patch4: %{name}-disable-tests.patch
 
 # Fix path to libdir in .pc file
 # https://bugzilla.redhat.com/show_bug.cgi?id=1669664
-Patch5: openbabel-fix-libdir-in-pkgconfig.patch
+Patch5: %{name}-fix-libdir-in-pkgconfig.patch
 
 # Math 4 test is failing on s390x only
-Patch6: openbabel-disable-tests-s390x.patch
+Patch6: %{name}-disable-tests-s390x.patch
 
-Patch7: openbabel-3.1.1-fix_bug2223.patch
-Patch8: openbabel-3.1.1-fix_bug2217.patch
-Patch9: openbabel-3.1.1-bug2378.patch
+Patch7: %{name}-3.1.1-fix_bug2223.patch
+Patch8: %{name}-3.1.1-fix_bug2217.patch
+Patch9: %{name}-3.1.1-bug2378.patch
+Patch10: %{name}-3.1.1-bug2493.patch
 
 BuildRequires: make
 %if 0%{?el7}
@@ -168,6 +169,7 @@ Ruby wrapper for the Open Babel library.
 %patch7 -p1 -b .backup
 %patch8 -p1 -b .backup
 %patch9 -p1 -b .backup
+%patch10 -p1 -b .backup
 
 %if 0%{?fedora}
 rm -rf src/formats/libinchi
@@ -317,6 +319,9 @@ ctest3 -j1 --force-new-ctest-process
 %{ruby_vendorarchdir}/openbabel.so
 
 %changelog
+* Fri Jul 08 2022 Antonio Trande <sagitter@fedoraproject.org> - 3.1.1-9
+- Patched for rhbz#2105259
+
 * Mon Jun 13 2022 Python Maint <python-maint@redhat.com> - 3.1.1-8
 - Rebuilt for Python 3.11
 
@@ -338,9 +343,9 @@ ctest3 -j1 --force-new-ctest-process
 * Wed Sep 22 2021 Antonio Trande <sagitter@fedoraproject.org> - 3.1.1-2
 - Fix patches order
 
-* Thu Sep 02 2021 Antonio Trande <sagitter@fedoraproject.org> - 3.1.1-1
 - Release 3.1.1
 
+* Thu Sep 02 2021 Antonio Trande <sagitter@fedoraproject.org> - 3.1.1-1
 * Wed Sep 01 2021 Antonio Trande <sagitter@fedoraproject.org> - 2.4.1-39
 - Install license file and some release documentation