- fixed configure to detect external inchi (both pre-1.0.2 and 1.0.2)
- re-enabled inchi tests
This commit is contained in:
Dominik Mierzejewski
parent
9690e58b56
commit
2a0a8b2bf3
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@ -1,20 +0,0 @@
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diff -up openbabel-2.2.3/test/wrapper.sh.chk openbabel-2.2.3/test/wrapper.sh
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--- openbabel-2.2.3/test/wrapper.sh.chk 2009-07-29 01:05:03.000000000 +0200
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+++ openbabel-2.2.3/test/wrapper.sh 2009-08-26 15:55:28.000000000 +0200
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@@ -16,11 +16,11 @@ TESTS="${TESTS} logp_psa math"
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TESTS="${TESTS} mol phmodel residue rings"
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TESTS="${TESTS} smarts smilesmatch strip unitcell"
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TESTS="${TESTS} zipstream cml.sh test-set.sh"
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-if [ "x${srcdir}" != "x" ]; then
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- TESTS="${TESTS} ${srcdir}/inchi.pl ${srcdir}/inchi2.pl"
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-else
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- TESTS="${TESTS} inchi.pl inchi2.pl"
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-fi
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+#if [ "x${srcdir}" != "x" ]; then
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+# TESTS="${TESTS} ${srcdir}/inchi.pl ${srcdir}/inchi2.pl"
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+#else
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+# TESTS="${TESTS} inchi.pl inchi2.pl"
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+#fi
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PROVE=prove
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echo "top srcdir: .${topsrcdir}."
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@ -1,12 +1,65 @@
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diff -up openbabel-2.2.3/configure.in.inchi openbabel-2.2.3/configure.in
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--- openbabel-2.2.3/configure.in.inchi 2009-07-29 03:05:04.000000000 +0200
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+++ openbabel-2.2.3/configure.in 2009-08-26 16:26:08.000000000 +0200
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@@ -239,7 +239,7 @@ AC_SUBST(LIBDL)
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+++ openbabel-2.2.3/configure.in 2009-09-14 01:14:49.000000000 +0200
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@@ -239,8 +239,11 @@ AC_SUBST(LIBDL)
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AM_PATH_XML2(2.6.5)
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AM_CONDITIONAL(BUILD_XML, test x"$XML_LIBS" != "x")
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-AC_CHECK_LIB(inchi, GetINCHI, LIBINCHI="-linchi", LIBINCHI="")
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+AC_CHECK_LIB(stdinchi, GetStdINCHI, LIBINCHI="-lstdinchi", LIBINCHI="")
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AM_CONDITIONAL(BUILD_INCHI, test x"$LIBINCHI" = "x" -o "$inchi" = "yes")
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+AC_CHECK_LIB(stdinchi, GetStdINCHI, LIBSTDINCHI="-lstdinchi", LIBSTDINCHI="")
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AC_CHECK_LIB(inchi, GetINCHI, LIBINCHI="-linchi", LIBINCHI="")
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-AM_CONDITIONAL(BUILD_INCHI, test x"$LIBINCHI" = "x" -o "$inchi" = "yes")
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+AM_CONDITIONAL(HAVE_INCHI, test x"$LIBINCHI" != "x" -o x"$LIBSTDINCHI" != "x" -o "$inchi" = "yes")
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+AM_CONDITIONAL(HAVE_STDINCHI, test x"$LIBSTDINCHI" != "x")
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+AM_CONDITIONAL(BUILD_INCHI, test "$inchi" = "yes")
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AC_CHECK_LIB(z, inflateEnd, [zlib_cv_libz=yes], [zlib_cv_libz=no])
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AC_CHECK_HEADER(zlib.h, [zlib_cv_zlib_h=yes], [zlib_cv_zlib_h=no])
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diff -up openbabel-2.2.3/src/formats/Makefile.am.inchi openbabel-2.2.3/src/formats/Makefile.am
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--- openbabel-2.2.3/src/formats/Makefile.am.inchi 2009-07-09 15:05:02.000000000 +0200
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+++ openbabel-2.2.3/src/formats/Makefile.am 2009-09-14 01:15:55.000000000 +0200
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@@ -39,11 +39,17 @@ endif
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if !BUILD_SHARED
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noinst_LTLIBRARIES = libformats.la
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+if HAVE_INCHI
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if BUILD_INCHI
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libformats_la_LIBADD = inchi102/libinchi.la
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else
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+if HAVE_STDINCHI
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+libformats_la_LIBADD = -lstdinchi
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+else
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libformats_la_LIBADD = -linchi
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endif
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+endif
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+endif
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libformats_la_SOURCES = \
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APIInterface.cpp MCDLformat.cpp \
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CSRformat.cpp PQSformat.cpp alchemyformat.cpp \
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@@ -124,7 +130,7 @@ if HAVE_SHARED_POINTER
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formats_LTLIBRARIES += chemdrawcdxformat.la chemkinformat.la \
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rxnformat.la rsmiformat.la
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endif
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-if BUILD_INCHI
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+if HAVE_INCHI
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formats_LTLIBRARIES += inchiformat.la
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endif
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if BUILD_ZLIB
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@@ -261,12 +267,18 @@ hinformat_la_SOURCES = hinformat.cpp
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hinformat_la_LDFLAGS = -module -avoid-version -no-undefined $(win32ldflags) ../libopenbabel.la
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inchiformat_la_SOURCES = inchiformat.cpp getinchi.cpp
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+if HAVE_INCHI
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if BUILD_INCHI
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inchiformat_la_LDFLAGS = -module -avoid-version -no-undefined $(win32ldflags) ../libopenbabel.la inchi102/libinchi.la
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else
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inchiformat_la_LDFLAGS = -module -avoid-version -no-undefined $(win32ldflags) ../libopenbabel.la
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+if HAVE_STDINCHI
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+inchiformat_la_LIBADD = -lstdinchi
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+else
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inchiformat_la_LIBADD = -linchi
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endif
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+endif
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+endif
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jaguarformat_la_SOURCES = jaguarformat.cpp
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jaguarformat_la_LDFLAGS = -module -avoid-version -no-undefined $(win32ldflags) ../libopenbabel.la
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@ -16,7 +16,6 @@ Group: Applications/File
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URL: http://openbabel.org/
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Source: http://downloads.sourceforge.net/sourceforge/openbabel/%{name}-%{version}%{beta_str}.tar.gz
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Patch1: %{name}-rpm.patch
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Patch2: %{name}-check.patch
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Patch3: %{name}-inchi.patch
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BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
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BuildRequires: inchi-devel
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@ -91,7 +90,6 @@ Ruby wrapper for the Open Babel library.
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%prep
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%setup -q -n %{name}-%{version}%{beta_str}
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%patch1 -p1 -b .r
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%patch2 -p1 -b .chk
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%patch3 -p1 -b .inchi
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chmod 644 src/formats/mmcifformat.cpp
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@ -186,7 +184,8 @@ popd
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* Wed Aug 26 2009 Dominik Mierzejewski <rpm@greysector.net> 2.2.3-1
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- updated to 2.2.3
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- dropped obsolete patch
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- fix configure to detect external inchi-1.0.2
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- fixed configure to detect external inchi (both pre-1.0.2 and 1.0.2)
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- re-enabled inchi tests
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* Sat Jul 25 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.1-0.2.b3
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
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