Drop use of %buildarch in macros.octave (bugz#1733898)

Signed-off-by: Fedora Release Engineering <releng@fedoraproject.org>

.cvsignore

@@ -1 +0,0 @@
-octave-3.2.4.tar.bz2

.gitignore

@@ -0,0 +1,34 @@
+octave-3.2.4.tar.bz2
+/octave-3.3.54.tar.bz2
+/octave-3.4.0.tar.bz2
+/octave-3.4.2.tar.bz2
+/octave-3.4.3.tar.bz2
+/octave-3.6.0.tar.bz2
+/octave-3.6.1.tar.bz2
+/octave-3.6.2-rc0.tar.bz2
+/octave-3.6.2-rc2.tar.bz2
+/octave-3.6.2.tar.bz2
+/octave-3.6.3.tar.bz2
+/octave-3.6.4-rc0.tar.bz2
+/octave-3.6.4-rc1.tar.gz
+/octave-3.6.4-rc2.tar.gz
+/octave-3.6.4.tar.bz2
+/octave-3.8.0-rc1.tar.gz
+/octave-3.8.0-rc2.tar.gz
+/octave-3.8.0.tar.bz2
+/octave-3.8.1.tar.bz2
+/octave-3.8.2-rc1.tar.gz
+/octave-3.8.2-rc2.tar.gz
+/octave-3.8.2.tar.bz2
+/octave-4.0.0.tar.xz
+/octave-4.0.1.tar.xz
+/octave-4.0.2.tar.xz
+/octave-4.0.3.tar.xz
+/octave-4.2.0-rc1.tar.xz
+/octave-4.2.0.tar.lz
+/octave-4.2.1.tar.lz
+/octave-4.2.2.tar.lz
+/octave-4.4.1.tar.lz
+/octave-4.4.1-docs.tar.gz
+/octave-5.1.0.tar.lz
+/octave-5.1.0-docs.tar.lz

Makefile

@@ -1,21 +0,0 @@
-# Makefile for source rpm: octave
-# $Id$
-NAME := octave
-SPECFILE = $(firstword $(wildcard *.spec))
-
-define find-makefile-common
-for d in common ../common ../../common ; do if [ -f $$d/Makefile.common ] ; then if [ -f $$d/CVS/Root -a -w $$d/Makefile.common ] ; then cd $$d ; cvs -Q update ; fi ; echo "$$d/Makefile.common" ; break ; fi ; done
-endef
-
-MAKEFILE_COMMON := $(shell $(find-makefile-common))
-
-ifeq ($(MAKEFILE_COMMON),)
-# attept a checkout
-define checkout-makefile-common
-test -f CVS/Root && { cvs -Q -d $$(cat CVS/Root) checkout common && echo "common/Makefile.common" ; } || { echo "ERROR: I can't figure out how to checkout the 'common' module." ; exit -1 ; } >&2
-endef
-
-MAKEFILE_COMMON := $(shell $(checkout-makefile-common))
-endif
-
-include $(MAKEFILE_COMMON)

import.log

@@ -1,5 +0,0 @@
-octave-3_0_2-2_fc10:HEAD:octave-3.0.2-2.fc10.src.rpm:1224776342
-octave-3_0_5-1_fc11:HEAD:octave-3.0.5-1.fc11.src.rpm:1239552316
-octave-3_2_0-1_fc11:HEAD:octave-3.2.0-1.fc11.src.rpm:1247313567
-octave-3_2_2-1_fc11:HEAD:octave-3.2.2-1.fc11.src.rpm:1249027014
-octave-3_2_2-5_fc12:HEAD:octave-3.2.2-5.fc12.src.rpm:1253686658

macros.octave

@@ -0,0 +1,83 @@
+# Octave packaging macros
+
+# Octave binary API provided
+%octave_api %(octave-config -p API_VERSION || echo 0)
+
+# Octave Package Directories
+%octshareprefix %{_datadir}/octave
+%octprefix %{octshareprefix}/packages
+%octarchprefix %{_libdir}/octave/packages
+%octpkgdir %{octprefix}/%{octpkg}-%{version}
+%octpkglibdir %{octarchprefix}/%{octpkg}-%{version}
+
+# Run an octave command - quietly with no startup files
+%octave_cmd() octave -H -q --no-window-system --no-site-file --eval '%*';
+
+# For compiled tarfile name
+%octave_host %(octave-config -p CANONICAL_HOST_TYPE || echo 0)
+
+# Build unpacked source directory into a package tar file in a temporary location
+# Pass -T to use source tarball
+%octave_pkg_build(T) %{lua: 
+  if (rpm.expand("%{-T}") == "-T") then
+    octpkg_tarfile = rpm.expand("%{SOURCE0}")
+  else
+    octpkg_tarfile = rpm .expand("%{_tmppath}/%{octpkg}-%{version}.tar.gz")
+    print("tar czf "..octpkg_tarfile.." -C "..rpm.expand("%{_builddir} %{buildsubdir}").."\\n")
+  end
+  -- Avoid a warning from pkg build about making the build directory
+  -- and use a clean directory as octave pkg build will delete contents
+  print(rpm.expand("mkdir -p %{_builddir}/%{buildsubdir}/build\\n"))
+  -- This fails to keep the arguments to %octave_cmd for some reason
+  -- print(rpm.expand("%octave_cmd pkg build -verbose -nodeps %{_builddir}/%{buildsubdir} "..octpkg_tarfile).."\\n")
+  print(rpm.expand("octave -H -q --no-window-system --no-site-file --eval 'pkg build -verbose -nodeps %{_builddir}/%{buildsubdir}/build "..octpkg_tarfile).."'\\n")
+  -- Extract the source tarball for debuginfo generation
+  print(rpm.expand("tar xf "..octpkg_tarfile.." -C %{_builddir}/%{buildsubdir}/build\\n"))
+}
+
+# Install a package.  We use the octave pkg install command to install the
+# built package into the buildroot.  We also put a note to prevent the root
+# user from removing the package with the octave pkg uninstall command
+# We call unlink to remove the 'octave_packages' file which contains the
+# buildroot string and needs to be generated at package install time.
+%octave_pkg_install \
+mkdir -p %{buildroot}%{octprefix} \
+mkdir -p %{buildroot}%{octarchprefix} \
+%octave_cmd pkg("prefix","%{buildroot}%{octprefix}","%{buildroot}%{octarchprefix}");pkg("global_list",fullfile("%{buildroot}%{octshareprefix}","octave_packages"));pkg("local_list",fullfile("%{buildroot}%{octshareprefix}","octave_packages"));pkg("install","-nodeps","-verbose",glob("%{_builddir}/%{buildsubdir}/build/%{octpkg}-%{version}-*.tar.gz"){1,1});unlink(pkg("local_list"));unlink(pkg("global_list")); \
+if [ -e %{buildroot}%{octpkgdir}/packinfo/on_uninstall.m ] \
+then \
+  mv %{buildroot}%{octpkgdir}/packinfo/on_uninstall.m %{buildroot}%{octpkgdir}/packinfo/on_uninstall.m.orig \
+fi \
+echo "function on_uninstall (desc)" > %{buildroot}%{octpkgdir}/packinfo/on_uninstall.m \
+echo "  error ('Can not uninstall %s installed by the redhat package manager', desc.name);" >> %{buildroot}%{octpkgdir}/packinfo/on_uninstall.m \
+echo "endfunction" >> %{buildroot}%{octpkgdir}/packinfo/on_uninstall.m \
+if [ -e %{_builddir}/%{buildsubdir}/build/%{octpkg}-%{version}/*.metainfo.xml ] \
+then \
+  echo "Found .metainfo.xml appdata file" \
+  mkdir -p %{buildroot}/%{_metainfodir} \
+  cp -p %{_builddir}/%{buildsubdir}/build/%{octpkg}-%{version}/*.metainfo.xml %{buildroot}/%{_metainfodir}/ \
+  appstream-util validate-relax --nonet %{buildroot}/%{_metainfodir}/*.metainfo.xml \
+else \
+  echo "Did not find a .metainfo.xml appdata file" \
+fi \
+%{nil}
+
+# Run pkg tests - We need to reinstall to recreate 'octave_packages' so that
+# octave can find the package, then remove 'octave_packages' again, and re-strip
+# any shared objects.
+%octave_pkg_check \
+%octave_cmd pkg("prefix","%{buildroot}%{octprefix}","%{buildroot}%{octarchprefix}");pkg("local_list",fullfile("%{buildroot}%{octshareprefix}","octave_packages"));pkg("list");pkg("install","-verbose",glob("%{_builddir}/%{buildsubdir}/build/%{octpkg}-%{version}-*.tar.gz"){1,1});pkg("load","%{octpkg}");pkg("list");runtests("%{buildroot}%{octpkgdir}");unlink(pkg("local_list")); \
+/usr/lib/rpm/brp-strip-shared %{__strip} \
+%{nil}
+
+# preun script - we need to remove our uninstall protection and perhaps
+# run the package's own uninstall script.
+%octave_pkg_preun \
+if [ -e %{octpkgdir}/packinfo/on_uninstall.m.orig ]; then \
+  mv %{octpkgdir}/packinfo/on_uninstall.m.orig %{octpkgdir}/packinfo/on_uninstall.m \
+  cd %{octpkgdir}/packinfo \
+  %octave_cmd l=pkg("list");on_uninstall(l{cellfun(@(x)strcmp(x.name,"%{octpkg}"),l)}); \
+else \
+  echo > %{octpkgdir}/packinfo/on_uninstall.m \
+fi \
+%{nil}

octave-crash.patch

@@ -0,0 +1,12 @@
+diff -up octave-4.4.1/libinterp/corefcn/input.cc.crash octave-4.4.1/libinterp/corefcn/input.cc
+--- octave-4.4.1/libinterp/corefcn/input.cc.crash	2018-11-11 17:27:39.588037444 -0700
++++ octave-4.4.1/libinterp/corefcn/input.cc	2018-11-11 17:30:42.344208272 -0700
+@@ -255,7 +255,7 @@ namespace octave
+ 
+         octave_diary << retval;
+ 
+-        if (retval.back () != '\n')
++        if (!retval.empty () && retval.back () != '\n')
+           octave_diary << "\n";
+       }
+     else

octave-eof.patch

@@ -0,0 +1,28 @@
+
+# HG changeset patch
+# User Mike Miller <mtmiller@octave.org>
+# Date 1554238576 25200
+# Node ID c3716220d5b93c49e1c7cc8ebe0b76dd961f4ec7
+# Parent  fc73dafece570f201c18a4eb4a8729a654cfcfbb
+fix pause and kbhit with glibc 2.28 end-of-file state behavior (bug #55029)
+
+* sysdep.cc (octave::kbhit): Call "clearerr (stdin)" on end-of-file condition
+in addition to "std::cin.clear ()".  In glibc 2.28, end-of-file is persistent
+and must be cleared by the application.
+
+diff --git a/libinterp/corefcn/sysdep.cc b/libinterp/corefcn/sysdep.cc
+--- a/libinterp/corefcn/sysdep.cc
++++ b/libinterp/corefcn/sysdep.cc
+@@ -566,7 +566,10 @@
+     int c = std::cin.get ();
+ 
+     if (std::cin.fail () || std::cin.eof ())
+-      std::cin.clear ();
++      {
++        std::cin.clear ();
++        clearerr (stdin);
++      }
+ 
+     // Restore it, enabling system call restarts (if possible).
+     octave::set_interrupt_handler (saved_interrupt_handler, true);
+

octave-sundials3.patch

@@ -0,0 +1,504 @@
+diff -up octave-5.0.91/configure.ac.sundials3 octave-5.0.91/configure.ac
+--- octave-5.0.91/configure.ac.sundials3	2019-02-04 10:50:20.000000000 -0700
++++ octave-5.0.91/configure.ac	2019-02-05 22:05:44.096260529 -0700
+@@ -2220,15 +2220,15 @@ OCTAVE_CHECK_LIB(sundials_ida, [SUNDIALS
+   [], [don't use SUNDIALS IDA library, solvers ode15i and ode15s will be disabled],
+   [warn_sundials_ida=
+    OCTAVE_CHECK_SUNDIALS_SIZEOF_REALTYPE
+-   OCTAVE_CHECK_SUNDIALS_IDA_DENSE
+-   OCTAVE_CHECK_SUNDIALS_IDAKLU])
++   OCTAVE_CHECK_SUNDIALS_SUNLINSOL_DENSE
++   OCTAVE_CHECK_SUNDIALS_SUNLINSOL_KLU])
+ LIBS="$save_LIBS"
+ 
+ dnl Define this way instead of with an #if in oct-conf-post.h so that
+ dnl the build features script will get the correct value.
+ if test -n "$SUNDIALS_IDA_LIBS" \
+     && test -n "$SUNDIALS_NVECSERIAL_LIBS" \
+-    && test $octave_cv_sundials_ida_dense = yes \
++    && test $octave_cv_sundials_sunlinsol_dense = yes \
+     && test $octave_cv_sundials_realtype_is_double = yes; then
+   AC_DEFINE(HAVE_SUNDIALS, 1, [Define to 1 if SUNDIALS is available.])
+ fi
+diff -up octave-5.0.91/libinterp/dldfcn/__ode15__.cc.sundials3 octave-5.0.91/libinterp/dldfcn/__ode15__.cc
+--- octave-5.0.91/libinterp/dldfcn/__ode15__.cc.sundials3	2019-02-04 10:50:20.000000000 -0700
++++ octave-5.0.91/libinterp/dldfcn/__ode15__.cc	2019-02-05 22:06:48.074012827 -0700
+@@ -1,6 +1,7 @@
+ /*
+ 
+ Copyright (C) 2016-2019 Francesco Faccio <francesco.faccio@mail.polimi.it>
++Copyright (C) 2018 William Greene <w.h.greene@gmail.com>
+ 
+ This file is part of Octave.
+ 
+@@ -44,15 +45,34 @@ along with Octave; see the file COPYING.
+ #    include <ida/ida.h>
+ #  endif
+ 
+-#  if defined (HAVE_IDA_IDA_DENSE_H)
+-#    include <ida/ida_dense.h>
++#  if defined (HAVE_SUNDIALS_SUNDIALS_MATRIX_H)
++#    include <sundials/sundials_matrix.h>
+ #  endif
+ 
+-#  if defined (HAVE_IDA_IDA_KLU_H)
+-#    include <ida/ida_klu.h>
++#  if defined (HAVE_SUNDIALS_SUNDIALS_LINEARSOLVER_H)
++#    include <sundials/sundials_linearsolver.h>
++#  endif
++
++#  if defined (HAVE_SUNLINSOL_SUNLINSOL_DENSE_H)
++#    include <sunlinsol/sunlinsol_dense.h>
++#  endif
++
++#  if defined (HAVE_IDA_IDA_DIRECT_H)
++#    include <ida/ida_direct.h>
++#  endif
++
++#  if defined (HAVE_SUNDIALS_SUNDIALS_SPARSE_H)
+ #    include <sundials/sundials_sparse.h>
+ #  endif
+ 
++#  if defined (HAVE_SUNLINSOL_SUNLINSOL_KLU_H)
++#    include <sunlinsol/sunlinsol_klu.h>
++#  endif
++
++#  if defined (HAVE_SUNMATRIX_SUNMATRIX_SPARSE_H)
++#    include <sunmatrix/sunmatrix_sparse.h>
++#  endif
++
+ #  if defined (HAVE_NVECTOR_NVECTOR_SERIAL_H)
+ #    include <nvector/nvector_serial.h>
+ #  endif
+@@ -112,7 +132,8 @@ namespace octave
+         havejacsparse (false), mem (nullptr), num (), ida_fun (nullptr),
+         ida_jac (nullptr), dfdy (nullptr), dfdyp (nullptr), spdfdy (nullptr),
+         spdfdyp (nullptr), fun (nullptr), jacfun (nullptr), jacspfun (nullptr),
+-        jacdcell (nullptr), jacspcell (nullptr)
++        jacdcell (nullptr), jacspcell (nullptr),
++        sunJacMatrix (nullptr), sunLinearSolver (nullptr)
+     { }
+ 
+ 
+@@ -122,11 +143,17 @@ namespace octave
+         havejacsparse (false), mem (nullptr), num (), ida_fun (ida_fcn),
+         ida_jac (nullptr), dfdy (nullptr), dfdyp (nullptr), spdfdy (nullptr),
+         spdfdyp (nullptr), fun (daefun), jacfun (nullptr), jacspfun (nullptr),
+-        jacdcell (nullptr), jacspcell (nullptr)
++        jacdcell (nullptr), jacspcell (nullptr),
++        sunJacMatrix (nullptr), sunLinearSolver (nullptr)
+     { }
+ 
+ 
+-    ~IDA (void) { IDAFree (&mem); }
++    ~IDA (void)
++    {
++      IDAFree (&mem);
++      SUNLinSolFree(sunLinearSolver);
++      SUNMatDestroy(sunJacMatrix);
++    }
+ 
+     IDA&
+     set_jacobian (octave_function *jac, DAEJacFuncDense j)
+@@ -184,7 +211,7 @@ namespace octave
+     static N_Vector ColToNVec (const ColumnVector& data, long int n);
+ 
+     void
+-    set_up (void);
++    set_up (const ColumnVector& y);
+ 
+     void
+     set_tolerance (ColumnVector& abstol, realtype reltol);
+@@ -199,25 +226,24 @@ namespace octave
+     void
+     resfun_impl (realtype t, N_Vector& yy,
+                  N_Vector& yyp, N_Vector& rr);
+-
+     static int
+-    jacdense (long int Neq, realtype t,  realtype cj, N_Vector yy,
+-              N_Vector yyp, N_Vector, DlsMat JJ, void *user_data,
++    jacdense (realtype t, realtype cj, N_Vector yy,
++              N_Vector yyp, N_Vector, SUNMatrix JJ, void *user_data,
+               N_Vector, N_Vector, N_Vector)
+     {
+       IDA *self = static_cast <IDA *> (user_data);
+-      self->jacdense_impl (Neq, t, cj, yy, yyp, JJ);
++      self->jacdense_impl (t, cj, yy, yyp, JJ);
+       return 0;
+     }
+ 
+     void
+-    jacdense_impl (long int Neq, realtype t, realtype cj,
+-                   N_Vector& yy, N_Vector& yyp, DlsMat& JJ);
++    jacdense_impl (realtype t, realtype cj,
++                   N_Vector& yy, N_Vector& yyp, SUNMatrix& JJ);
+ 
+-#  if defined (HAVE_SUNDIALS_IDAKLU)
++#  if defined (HAVE_SUNDIALS_SUNLINSOL_KLU)
+     static int
+     jacsparse (realtype t, realtype cj, N_Vector yy, N_Vector yyp,
+-               N_Vector, SlsMat Jac, void *user_data, N_Vector,
++               N_Vector, SUNMatrix Jac, void *user_data, N_Vector,
+                N_Vector, N_Vector)
+     {
+       IDA *self = static_cast <IDA *> (user_data);
+@@ -227,7 +253,7 @@ namespace octave
+ 
+     void
+     jacsparse_impl (realtype t, realtype cj, N_Vector& yy,
+-                    N_Vector& yyp, SlsMat& Jac);
++                    N_Vector& yyp, SUNMatrix& Jac);
+ #endif
+ 
+     void set_maxstep (realtype maxstep);
+@@ -291,6 +317,8 @@ namespace octave
+     DAEJacFuncSparse jacspfun;
+     DAEJacCellDense jacdcell;
+     DAEJacCellSparse jacspcell;
++    SUNMatrix sunJacMatrix;
++    SUNLinearSolver sunLinearSolver;
+   };
+ 
+   int
+@@ -323,36 +351,61 @@ namespace octave
+   }
+ 
+   void
+-  IDA::set_up (void)
++  IDA::set_up (const ColumnVector& y)
+   {
++    N_Vector yy = ColToNVec(y, num);
++
+     if (havejacsparse)
+       {
+-#  if defined (HAVE_SUNDIALS_IDAKLU)
+-        if (IDAKLU (mem, num, num*num, CSC_MAT) != 0)
+-          error ("IDAKLU solver not initialized");
++#if defined (HAVE_SUNDIALS_SUNLINSOL_KLU)
++
++        sunJacMatrix = SUNSparseMatrix (num, num, num*num, CSC_MAT);
++        if (! sunJacMatrix)
++          error ("Unable to create sparse Jacobian for Sundials");
++
++        sunLinearSolver = SUNKLU (yy, sunJacMatrix);
++        if (! sunLinearSolver)
++          error ("Unable to create KLU sparse solver");
++
++        if (IDADlsSetLinearSolver (mem, sunLinearSolver, sunJacMatrix))
++          error ("Unable to set sparse linear solver");
++
++        IDADlsSetJacFn(mem, IDA::jacsparse);
+ 
+-        IDASlsSetSparseJacFn (mem, IDA::jacsparse);
+ #  else
+-        error ("IDAKLU is not available in this version of Octave");
++        error ("SUNDIALS SUNLINSOL KLU is not available in this version of Octave");
+ #  endif
++
+       }
+     else
+       {
+-        if (IDADense (mem, num) != 0)
+-          error ("IDADense solver not initialized");
+ 
+-        if (havejac && IDADlsSetDenseJacFn (mem, IDA::jacdense) != 0)
+-          error ("Dense Jacobian not set");
++        sunJacMatrix = SUNDenseMatrix (num, num);
++        if (! sunJacMatrix)
++          error ("Unable to create dense Jacobian for Sundials");
++
++        sunLinearSolver = SUNDenseLinearSolver(yy, sunJacMatrix);
++        if (! sunLinearSolver)
++          error ("Unable to create dense linear solver");
++
++        if (IDADlsSetLinearSolver (mem, sunLinearSolver, sunJacMatrix))
++          error ("Unable to set dense linear solver");
++
++        if (havejac && IDADlsSetJacFn (mem, IDA::jacdense) != 0)
++          error("Unable to set dense Jacobian function");
++
+       }
+   }
+ 
+   void
+-  IDA::jacdense_impl (long int Neq, realtype t, realtype cj,
+-                      N_Vector& yy, N_Vector& yyp, DlsMat& JJ)
++  IDA::jacdense_impl (realtype t, realtype cj,
++                      N_Vector& yy, N_Vector& yyp, SUNMatrix& JJ)
+ 
+   {
+     BEGIN_INTERRUPT_WITH_EXCEPTIONS;
+ 
++    long int Neq = NV_LENGTH_S(yy);
++
+     ColumnVector y = NVecToCol (yy, Neq);
+ 
+     ColumnVector yp = NVecToCol (yyp, Neq);
+@@ -366,15 +419,15 @@ namespace octave
+ 
+     std::copy (jac.fortran_vec (),
+                jac.fortran_vec () + jac.numel (),
+-               JJ->data);
++      SUNDenseMatrix_Data(JJ));
+ 
+     END_INTERRUPT_WITH_EXCEPTIONS;
+   }
+ 
+-#  if defined (HAVE_SUNDIALS_IDAKLU)
++#  if defined (HAVE_SUNDIALS_SUNLINSOL_KLU)
+   void
+   IDA::jacsparse_impl (realtype t, realtype cj, N_Vector& yy, N_Vector& yyp,
+-                       SlsMat& Jac)
++                       SUNMatrix& Jac)
+ 
+   {
+     BEGIN_INTERRUPT_WITH_EXCEPTIONS;
+@@ -390,17 +443,18 @@ namespace octave
+     else
+       jac = (*jacspcell) (spdfdy, spdfdyp, cj);
+ 
+-    SparseSetMatToZero (Jac);
+-    int *colptrs = *(Jac->colptrs);
+-    int *rowvals = *(Jac->rowvals);
++    SUNMatZero_Sparse (Jac);
++    sunindextype *colptrs = SUNSparseMatrix_IndexPointers (Jac);
++    sunindextype *rowvals = SUNSparseMatrix_IndexValues (Jac);
+ 
+     for (int i = 0; i < num + 1; i++)
+       colptrs[i] = jac.cidx(i);
+ 
++    double *d = SUNSparseMatrix_Data (Jac);
+     for (int i = 0; i < jac.nnz (); i++)
+       {
+         rowvals[i] = jac.ridx(i);
+-        Jac->data[i] = jac.data(i);
++        d[i] = jac.data(i);
+       }
+ 
+     END_INTERRUPT_WITH_EXCEPTIONS;
+@@ -567,7 +621,7 @@ namespace octave
+ 
+         //main loop
+         while (((posdirection == 1 && tsol < tend)
+-                || (posdirection == 0 && tsol > tend))
++               || (posdirection == 0 && tsol > tend))
+                && status == 0)
+           {
+             if (IDASolve (mem, tend, &tsol, yy, yyp, IDA_ONE_STEP) != 0)
+@@ -692,7 +746,7 @@ namespace octave
+             // Linear interpolation
+             ie(0) = index(0);
+             te(0) = tsol - val (index(0)) * (tsol - told)
+-                    / (val (index(0)) - oldval (index(0)));
++              / (val (index(0)) - oldval (index(0)));
+ 
+             ColumnVector ytemp
+               = y - ((tsol - te(0)) * (y - yold) / (tsol - told));
+@@ -717,7 +771,7 @@ namespace octave
+                 // Linear interpolation
+                 ie(temp+i) = index(i);
+                 te(temp+i) = tsol - val(index(i)) * (tsol - told)
+-                             / (val(index(i)) - oldval(index(i)));
++                  / (val(index(i)) - oldval(index(i)));
+ 
+                 ColumnVector ytemp
+                   = y - (tsol - te (temp + i)) * (y - yold) / (tsol - told);
+@@ -1096,7 +1150,7 @@ namespace octave
+       event_fcn = options.getfield("Events").function_value ();
+ 
+     // Set up linear solver
+-    dae.set_up ();
++    dae.set_up (y0);
+ 
+     // Integrate
+     retval = dae.integrate (numt, tspan, y0, yp0, refine,
+diff -up octave-5.0.91/m4/acinclude.m4.sundials3 octave-5.0.91/m4/acinclude.m4
+--- octave-5.0.91/m4/acinclude.m4.sundials3	2019-02-04 10:50:20.000000000 -0700
++++ octave-5.0.91/m4/acinclude.m4	2019-02-05 22:05:44.100260576 -0700
+@@ -2210,14 +2210,11 @@ dnl Check whether SUNDIALS IDA library i
+ dnl precision realtype.
+ dnl
+ AC_DEFUN([OCTAVE_CHECK_SUNDIALS_SIZEOF_REALTYPE], [
+-  AC_CHECK_HEADERS([ida/ida.h ida.h])
+   AC_CACHE_CHECK([whether SUNDIALS IDA is configured with double precision realtype],
+     [octave_cv_sundials_realtype_is_double],
+     [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[
+         #if defined (HAVE_IDA_IDA_H)
+         #include <ida/ida.h>
+-        #else
+-        #include <ida.h>
+         #endif
+         #include <assert.h>
+         ]], [[
+@@ -2233,61 +2230,72 @@ AC_DEFUN([OCTAVE_CHECK_SUNDIALS_SIZEOF_R
+   fi
+ ])
+ dnl
+-dnl Check whether SUNDIALS IDA library is configured with IDAKLU
++dnl Check whether SUNDIALS IDA library is configured with SUNLINSOL_KLU
+ dnl enabled.
+ dnl
+-AC_DEFUN([OCTAVE_CHECK_SUNDIALS_IDAKLU], [
+-  AC_CHECK_HEADERS([ida/ida_klu.h ida_klu.h])
+-  AC_CACHE_CHECK([whether SUNDIALS IDA is configured with IDAKLU enabled],
+-    [octave_cv_sundials_idaklu],
++AC_DEFUN([OCTAVE_CHECK_SUNDIALS_SUNLINSOL_KLU], [
++  AC_CHECK_HEADERS([sundials/sundials_sparse.h sunlinsol/sunlinsol_klu.h sunmatrix/sunmatrix_sparse.h])
++  AC_CACHE_CHECK([whether SUNDIALS IDA is configured with SUNLINSOL_KLU enabled],
++    [octave_cv_sundials_sunlinsol_klu],
+     [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[
+-         #if defined (HAVE_IDA_IDA_KLU_H)
+-         #include <ida/ida_klu.h>
+-         #else
+-         #include <ida_klu.h>
++         #if defined (HAVE_IDA_IDA_H)
++         #include <ida/ida.h>
++         #endif
++         #if defined (HAVE_SUNDIALS_SUNDIALS_SPARSE_H)
++         #include <sundials/sundials_sparse.h>
++         #endif
++         #if defined (HAVE_SUNLINSOL_SUNLINSOL_KLU_H)
++         #include <sunlinsol/sunlinsol_klu.h>
+          #endif
+          ]], [[
+-         IDAKLU (0, 0, 0, 0);
++         SUNKLU (0, 0);
+       ]])],
+-      octave_cv_sundials_idaklu=yes,
+-      octave_cv_sundials_idaklu=no)
++      octave_cv_sundials_sunlinsol_klu=yes,
++      octave_cv_sundials_sunlinsol_klu=no)
+     ])
+-  if test $octave_cv_sundials_idaklu = yes; then
+-    AC_DEFINE(HAVE_SUNDIALS_IDAKLU, 1,
+-      [Define to 1 if SUNDIALS IDA is configured with IDAKLU enabled.])
++  if test $octave_cv_sundials_sunlinsol_klu = yes; then
++    AC_DEFINE(HAVE_SUNDIALS_SUNLINSOL_KLU, 1,
++      [Define to 1 if SUNDIALS IDA is configured with SUNLINSOL_KLU enabled.])
+   else
+-    warn_sundials_idaklu="SUNDIALS IDA library not configured with IDAKLU, ode15i and ode15s will not support the sparse Jacobian feature"
+-    OCTAVE_CONFIGURE_WARNING([warn_sundials_idaklu])
++    warn_sundials_idaklu="SUNDIALS IDA library not configured with SUNLINSOL_KLU, ode15i and ode15s will not support the sparse Jacobian feature"
++    OCTAVE_CONFIGURE_WARNING([warn_sundials_sunlinsol_klu])
+   fi
+ ])
+ dnl
+-dnl Check whether SUNDIALS IDA library has the IDADENSE linear solver.
++dnl Check whether SUNDIALS IDA library has the SUNLINSOL_DENSE linear solver.
+ dnl The IDADENSE API was removed in SUNDIALS version 3.0.0.
+ dnl
+-AC_DEFUN([OCTAVE_CHECK_SUNDIALS_IDA_DENSE], [
+-  AC_CHECK_HEADERS([ida/ida_dense.h ida_dense.h])
+-  AC_CACHE_CHECK([whether SUNDIALS IDA includes the IDADENSE linear solver],
+-    [octave_cv_sundials_ida_dense],
++AC_DEFUN([OCTAVE_CHECK_SUNDIALS_SUNLINSOL_DENSE], [
++  AC_CHECK_HEADERS([sunlinsol/sunlinsol_dense.h sundials/sundials_matrix.h sundials/sundials_linearsolver.h ida/ida_direct.h])
++  AC_CACHE_CHECK([whether SUNDIALS IDA includes the SUNLINSOL_DENSE linear solver],
++    [octave_cv_sundials_sunlinsol_dense],
+     [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[
+-         #if defined (HAVE_IDA_IDA_DENSE_H)
+-         #include <ida/ida_dense.h>
+-         #else
+-         #include <ida_dense.h>
++         #if defined (HAVE_IDA_IDA_H)
++         #include <ida/ida.h>
++         #endif
++         #if defined (HAVE_SUNDIALS_SUNDIALS_MATRIX_H)
++         #include <sundials/sundials_matrix.h>
++         #endif
++         #if defined (HAVE_SUNDIALS_SUNDIALS_LINEARSOLVER_H)
++         #include <sundials/sundials_linearsolver.h>
+          #endif
++         #if defined (HAVE_IDA_IDA_DIRECT_H)
++         #include <ida/ida_direct.h>
++         #endif         
+          ]], [[
+          void *mem = 0;
+          long int num = 0;
+          IDADense (mem, num);
+       ]])],
+-      octave_cv_sundials_ida_dense=yes,
+-      octave_cv_sundials_ida_dense=no)
++      octave_cv_sundials_sunlinsol_dense=yes,
++      octave_cv_sundials_sunlinsol_dense=no)
+     ])
+-  if test $octave_cv_sundials_ida_dense = yes; then
+-    AC_DEFINE(HAVE_SUNDIALS_IDADENSE, 1,
+-      [Define to 1 if SUNDIALS IDA includes the IDADENSE linear solver.])
++  if test $octave_cv_sundials_sunlinsol_dense = yes; then
++    AC_DEFINE(HAVE_SUNDIALS_SUNLINSOL_DENSE, 1,
++      [Define to 1 if SUNDIALS IDA includes the SUNLINSOL_DENSE linear solver.])
+   else
+-    warn_sundials_ida_dense="SUNDIALS IDA library does not include the IDADENSE linear solver, ode15i and ode15s will be disabled"
+-    OCTAVE_CONFIGURE_WARNING([warn_sundials_ida_dense])
++    warn_sundials_ida_dense="SUNDIALS IDA library does not include the SUNLINSOL_DENSE linear solver, ode15i and ode15s will be disabled"
++    OCTAVE_CONFIGURE_WARNING([warn_sundials_sunlinsol_dense])
+   fi
+ ])
+ dnl
+diff -up octave-5.0.91/scripts/ode/ode15i.m.sundials3 octave-5.0.91/scripts/ode/ode15i.m
+--- octave-5.0.91/scripts/ode/ode15i.m.sundials3	2019-02-04 10:50:20.000000000 -0700
++++ octave-5.0.91/scripts/ode/ode15i.m	2019-02-05 22:05:44.101260588 -0700
+@@ -452,7 +452,7 @@ endfunction
+ %! assert ([t(end), y(end,:)], fref, 1e-3);
+ 
+ ## Jacobian fun sparse
+-%!testif HAVE_SUNDIALS_IDAKLU
++%!testif HAVE_SUNDIALS_SUNLINSOL_KLU
+ %! opt = odeset ("Jacobian", @jacfunsparse, "AbsTol", 1e-7, "RelTol", 1e-7);
+ %! [t, y] = ode15i (@rob, [0, 100], [1; 0; 0], [-1e-4; 1e-4; 0], opt);
+ %! assert ([t(end), y(end,:)], fref, 1e-3);
+@@ -545,7 +545,7 @@ endfunction
+ %!       "invalid value assigned to field 'Jacobian'");
+ 
+ ## Jacobian cell sparse wrong dimension
+-%!testif HAVE_SUNDIALS_IDAKLU
++%!testif HAVE_SUNDIALS_SUNLINSOL_KLU
+ %! DFDY = sparse ([-0.04, 1;
+ %!                  0.04, 1]);
+ %! DFDYP = sparse ([-1,  0, 0;
+diff -up octave-5.0.91/scripts/ode/ode15s.m.sundials3 octave-5.0.91/scripts/ode/ode15s.m
+--- octave-5.0.91/scripts/ode/ode15s.m.sundials3	2019-02-04 10:50:20.000000000 -0700
++++ octave-5.0.91/scripts/ode/ode15s.m	2019-02-05 22:05:44.102260599 -0700
+@@ -545,21 +545,21 @@ endfunction
+ %! [t, y] = ode15s (@rob, [0, 100], [1; 0; 0], opt);
+ %! assert ([t(end), y(end,:)], frefrob, 1e-3);
+ 
+-%!testif HAVE_SUNDIALS_IDAKLU
++%!testif HAVE_SUNDIALS_SUNLINSOL_KLU
+ %! opt = odeset ("MStateDependence", "none",
+ %!               "Mass", [1, 0, 0; 0, 1, 0; 0, 0, 0],
+ %!               "Jacobian", @jacfunsparse);
+ %! [t, y] = ode15s (@rob, [0, 100], [1; 0; 0], opt);
+ %! assert ([t(end), y(end,:)], frefrob, 1e-3);
+ 
+-%!testif HAVE_SUNDIALS_IDAKLU
++%!testif HAVE_SUNDIALS_SUNLINSOL_KLU
+ %! opt = odeset ("MStateDependence", "none",
+ %!               "Mass", sparse ([1, 0, 0; 0, 1, 0; 0, 0, 0]),
+ %!               "Jacobian", @jacfunsparse);
+ %! [t, y] = ode15s (@rob, [0, 100], [1; 0; 0], opt);
+ %! assert ([t(end), y(end,:)], frefrob, 1e-3);
+ 
+-%!testif HAVE_SUNDIALS_IDAKLU
++%!testif HAVE_SUNDIALS_SUNLINSOL_KLU
+ %! warning ("off", "ode15s:mass_state_dependent_provided", "local");
+ %! opt = odeset ("MStateDependence", "none",
+ %!               "Mass", @massdensefunstate,
+@@ -575,14 +575,14 @@ endfunction
+ %! [t, y] = ode15s (@rob, [0, 100], [1; 0; 0], opt);
+ %! assert ([t(end), y(end,:)], frefrob, 1e-3);
+ 
+-%!testif HAVE_SUNDIALS_IDAKLU
++%!testif HAVE_SUNDIALS_SUNLINSOL_KLU
+ %! opt = odeset ("MStateDependence", "none",
+ %!               "Mass", @massdensefuntime,
+ %!               "Jacobian", @jacfunsparse);
+ %! [t, y] = ode15s (@rob, [0, 100], [1; 0; 0], opt);
+ %! assert ([t(end), y(end,:)], frefrob, 1e-3);
+ 
+-%!testif HAVE_SUNDIALS_IDAKLU
++%!testif HAVE_SUNDIALS_SUNLINSOL_KLU
+ %! opt = odeset ("MStateDependence", "none",
+ %!               "Mass", @masssparsefuntime,
+ %!               "Jacobian", @jacfunsparse);

sources

@@ -1 +1,2 @@
-608196657f4fa010420227b77333bb71  octave-3.2.4.tar.bz2
+SHA512 (octave-5.1.0.tar.lz) = 34facc20ffceaead05e62e16cc70bd603919c7e52c7489faa17b5c969a160c655f50c4aeb41ecee2e2d0a6245cc3364cf9009ddd3cecb17b9e06bbdacaa0a516
+SHA512 (octave-5.1.0-docs.tar.lz) = 6bf24ed95d5d2957271abb8902a156edc588962b95218b05936858fafe8205f4295f072388f7331ad5700946fbae701bd0c3f2a59c258f390ea92c85eb87fdd2

xorg.conf

@@ -0,0 +1,137 @@
+# This xorg configuration file is meant to be used by xpra
+# to start a dummy X11 server.
+# For details, please see:
+# https://xpra.org/Xdummy.html
+
+Section "ServerFlags"
+  Option "DontVTSwitch" "true"
+  Option "AllowMouseOpenFail" "true"
+  Option "PciForceNone" "true"
+  Option "AutoEnableDevices" "false"
+  Option "AutoAddDevices" "false"
+EndSection
+
+Section "InputDevice"
+  Identifier "dummy_mouse"
+  Option "CorePointer" "true"
+  Driver "void"
+EndSection
+
+Section "InputDevice"
+  Identifier "dummy_keyboard"
+  Option "CoreKeyboard" "true"
+  Driver "void"
+EndSection
+
+Section "Device"
+  Identifier "dummy_videocard"
+  Driver "dummy"
+  Option "ConstantDPI" "true"
+  #VideoRam 4096000
+  #VideoRam 256000
+  VideoRam 192000
+EndSection
+
+Section "Monitor"
+  Identifier "dummy_monitor"
+  HorizSync   5.0 - 1000.0
+  VertRefresh 5.0 - 200.0
+  #This can be used to get a specific DPI, but only for the default resolution:
+  #DisplaySize 508 317
+  #NOTE: the highest modes will not work without increasing the VideoRam
+  # for the dummy video card.
+  Modeline "32768x32768" 15226.50 32768 35800 39488 46208 32768 32771 32781 32953
+  Modeline "32768x16384" 7516.25 32768 35544 39192 45616 16384 16387 16397 16478
+  Modeline "16384x8192" 2101.93 16384 16416 24400 24432 8192 8390 8403 8602
+  Modeline "8192x4096" 424.46 8192 8224 9832 9864 4096 4195 4202 4301
+  Modeline "5496x1200" 199.13 5496 5528 6280 6312 1200 1228 1233 1261
+  Modeline "5280x1080" 169.96 5280 5312 5952 5984 1080 1105 1110 1135
+  Modeline "5280x1200" 191.40 5280 5312 6032 6064 1200 1228 1233 1261
+  Modeline "5120x3200" 199.75 5120 5152 5904 5936 3200 3277 3283 3361
+  Modeline "4800x1200" 64.42 4800 4832 5072 5104 1200 1229 1231 1261
+  Modeline "3840x2880" 133.43 3840 3872 4376 4408 2880 2950 2955 3025
+  Modeline "3840x2560" 116.93 3840 3872 4312 4344 2560 2622 2627 2689
+  Modeline "3840x2048" 91.45 3840 3872 4216 4248 2048 2097 2101 2151
+  Modeline "3840x1080" 100.38 3840 3848 4216 4592 1080 1081 1084 1093
+  Modeline "3600x1200" 106.06 3600 3632 3984 4368 1200 1201 1204 1214
+  Modeline "3288x1080" 39.76 3288 3320 3464 3496 1080 1106 1108 1135
+  Modeline "2048x2048" 49.47 2048 2080 2264 2296 2048 2097 2101 2151
+  Modeline "2048x1536" 80.06 2048 2104 2312 2576 1536 1537 1540 1554
+  Modeline "2560x1600" 47.12 2560 2592 2768 2800 1600 1639 1642 1681
+  Modeline "2560x1440" 42.12 2560 2592 2752 2784 1440 1475 1478 1513
+  Modeline "1920x1440" 69.47 1920 1960 2152 2384 1440 1441 1444 1457
+  Modeline "1920x1200" 26.28 1920 1952 2048 2080 1200 1229 1231 1261
+  Modeline "1920x1080" 23.53 1920 1952 2040 2072 1080 1106 1108 1135
+  Modeline "1680x1050" 20.08 1680 1712 1784 1816 1050 1075 1077 1103
+  Modeline "1600x1200" 22.04 1600 1632 1712 1744 1200 1229 1231 1261
+  Modeline "1600x900" 33.92 1600 1632 1760 1792 900 921 924 946
+  Modeline "1440x900" 30.66 1440 1472 1584 1616 900 921 924 946
+  ModeLine "1366x768" 72.00 1366 1414 1446 1494  768 771 777 803
+  Modeline "1280x1024" 31.50 1280 1312 1424 1456 1024 1048 1052 1076
+  Modeline "1280x800" 24.15 1280 1312 1400 1432 800 819 822 841
+  Modeline "1280x768" 23.11 1280 1312 1392 1424 768 786 789 807
+  Modeline "1360x768" 24.49 1360 1392 1480 1512 768 786 789 807
+  Modeline "1024x768" 18.71 1024 1056 1120 1152 768 786 789 807
+  Modeline "768x1024" 19.50 768 800 872 904 1024 1048 1052 1076
+
+
+  #common resolutions for android devices (both orientations):
+  Modeline "800x1280" 25.89 800 832 928 960 1280 1310 1315 1345
+  Modeline "1280x800" 24.15 1280 1312 1400 1432 800 819 822 841
+  Modeline "720x1280" 30.22 720 752 864 896 1280 1309 1315 1345
+  Modeline "1280x720" 27.41 1280 1312 1416 1448 720 737 740 757
+  Modeline "768x1024" 24.93 768 800 888 920 1024 1047 1052 1076
+  Modeline "1024x768" 23.77 1024 1056 1144 1176 768 785 789 807
+  Modeline "600x1024" 19.90 600 632 704 736 1024 1047 1052 1076
+  Modeline "1024x600" 18.26 1024 1056 1120 1152 600 614 617 631
+  Modeline "536x960" 16.74 536 568 624 656 960 982 986 1009
+  Modeline "960x536" 15.23 960 992 1048 1080 536 548 551 563
+  Modeline "600x800" 15.17 600 632 688 720 800 818 822 841
+  Modeline "800x600" 14.50 800 832 880 912 600 614 617 631
+  Modeline "480x854" 13.34 480 512 560 592 854 873 877 897
+  Modeline "848x480" 12.09 848 880 920 952 480 491 493 505
+  Modeline "480x800" 12.43 480 512 552 584 800 818 822 841
+  Modeline "800x480" 11.46 800 832 872 904 480 491 493 505
+  #resolutions for android devices (both orientations)
+  #minus the status bar
+  #38px status bar (and width rounded up)
+  Modeline "800x1242" 25.03 800 832 920 952 1242 1271 1275 1305
+  Modeline "1280x762" 22.93 1280 1312 1392 1424 762 780 783 801
+  Modeline "720x1242" 29.20 720 752 856 888 1242 1271 1276 1305
+  Modeline "1280x682" 25.85 1280 1312 1408 1440 682 698 701 717
+  Modeline "768x986" 23.90 768 800 888 920 986 1009 1013 1036
+  Modeline "1024x730" 22.50 1024 1056 1136 1168 730 747 750 767
+  Modeline "600x986" 19.07 600 632 704 736 986 1009 1013 1036
+  Modeline "1024x562" 17.03 1024 1056 1120 1152 562 575 578 591
+  Modeline "536x922" 16.01 536 568 624 656 922 943 947 969
+  Modeline "960x498" 14.09 960 992 1040 1072 498 509 511 523
+  Modeline "600x762" 14.39 600 632 680 712 762 779 783 801
+  Modeline "800x562" 13.52 800 832 880 912 562 575 578 591
+  Modeline "480x810" 12.59 480 512 552 584 810 828 832 851
+  Modeline "848x442" 11.09 848 880 920 952 442 452 454 465
+  Modeline "480x762" 11.79 480 512 552 584 762 779 783 801
+EndSection
+
+Section "Screen"
+  Identifier "dummy_screen"
+  Device "dummy_videocard"
+  Monitor "dummy_monitor"
+  DefaultDepth 24
+  SubSectionSub "Display"
+    Viewport 0 0
+    Depth 24
+    #Modes "32768x32768" "32768x16384" "16384x8192" "8192x4096" "5120x3200" "3840x2880" "3840x2560" "3840x2048" "2048x2048" "2560x1600" "1920x1440" "1920x1200" "1920x1080" "1600x1200" "1680x1050" "1600x900" "1400x1050" "1440x900" "1280x1024" "1366x768" "1280x800" "1024x768" "1024x600" "800x600" "320x200"
+    Modes "5120x3200" "3840x2880" "3840x2560" "3840x2048" "2048x2048" "2560x1600" "1920x1440" "1920x1200" "1920x1080" "1600x1200" "1680x1050" "1600x900" "1400x1050" "1440x900" "1280x1024" "1366x768" "1280x800" "1024x768" "1024x600" "800x600" "320x200"
+    #Virtual 32000 32000
+    #Virtual 16384 8192
+    Virtual 8192 4096
+    #Virtual 5120 3200
+  EndSubSection
+EndSection
+
+Section "ServerLayout"
+  Identifier   "dummy_layout"
+  Screen       "dummy_screen"
+  InputDevice  "dummy_mouse"
+  InputDevice  "dummy_keyboard"
+EndSection