Merge branch 'master' into f17
Update to 3.6.3
This commit is contained in:
commit
5c43f15f4c
1
.gitignore
vendored
1
.gitignore
vendored
@ -8,3 +8,4 @@ octave-3.2.4.tar.bz2
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/octave-3.6.2-rc0.tar.bz2
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/octave-3.6.2-rc2.tar.bz2
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/octave-3.6.2.tar.bz2
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/octave-3.6.3.tar.bz2
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@ -1,86 +0,0 @@
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diff -up octave-3.6.2-rc2/libgnu/stdio.in.h.gets octave-3.6.2-rc2/libgnu/stdio.in.h
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--- octave-3.6.2-rc2/libgnu/stdio.in.h.gets 2012-05-24 12:46:13.000000000 -0600
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+++ octave-3.6.2-rc2/libgnu/stdio.in.h 2012-05-24 16:29:54.813734894 -0600
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@@ -1,12 +1,10 @@
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-/* -*- buffer-read-only: t -*- vi: set ro: */
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-/* DO NOT EDIT! GENERATED AUTOMATICALLY! */
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/* A GNU-like <stdio.h>.
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Copyright (C) 2004, 2007-2012 Free Software Foundation, Inc.
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This program is free software; you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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- the Free Software Foundation; either version 3, or (at your option)
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+ the Free Software Foundation; either version 2, or (at your option)
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any later version.
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This program is distributed in the hope that it will be useful,
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@@ -15,8 +13,7 @@
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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- along with this program; if not, write to the Free Software Foundation,
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- Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. */
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+ along with this program; if not, see <http://www.gnu.org/licenses/>. */
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#if __GNUC__ >= 3
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@PRAGMA_SYSTEM_HEADER@
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@@ -55,7 +52,8 @@
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#include <stddef.h>
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/* Get off_t and ssize_t. Needed on many systems, including glibc 2.8
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- and eglibc 2.11.2. */
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+ and eglibc 2.11.2.
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+ May also define off_t to a 64-bit type on native Windows. */
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#include <sys/types.h>
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/* The __attribute__ feature is available in gcc versions 2.5 and later.
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@@ -701,22 +699,11 @@ _GL_WARN_ON_USE (getline, "getline is un
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# endif
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#endif
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-#if @GNULIB_GETS@
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-# if @REPLACE_STDIO_READ_FUNCS@ && @GNULIB_STDIO_H_NONBLOCKING@
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-# if !(defined __cplusplus && defined GNULIB_NAMESPACE)
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-# undef gets
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-# define gets rpl_gets
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-# endif
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-_GL_FUNCDECL_RPL (gets, char *, (char *s) _GL_ARG_NONNULL ((1)));
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-_GL_CXXALIAS_RPL (gets, char *, (char *s));
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-# else
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-_GL_CXXALIAS_SYS (gets, char *, (char *s));
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-# undef gets
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-# endif
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-_GL_CXXALIASWARN (gets);
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/* It is very rare that the developer ever has full control of stdin,
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- so any use of gets warrants an unconditional warning. Assume it is
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- always declared, since it is required by C89. */
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+ so any use of gets warrants an unconditional warning; besides, C11
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+ removed it. */
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+#undef gets
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+#if HAVE_RAW_DECL_GETS
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_GL_WARN_ON_USE (gets, "gets is a security hole - use fgets instead");
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#endif
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@@ -781,7 +768,7 @@ _GL_CXXALIASWARN (pclose);
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#elif defined GNULIB_POSIXCHECK
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# undef pclose
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# if HAVE_RAW_DECL_PCLOSE
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-_GL_WARN_ON_USE (pclose, "popen is unportable - "
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+_GL_WARN_ON_USE (pclose, "pclose is unportable - "
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"use gnulib module pclose for more portability");
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# endif
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#endif
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@@ -1056,9 +1043,9 @@ _GL_WARN_ON_USE (snprintf, "snprintf is
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# endif
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#endif
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-/* Some people would argue that sprintf should be handled like gets
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- (for example, OpenBSD issues a link warning for both functions),
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- since both can cause security holes due to buffer overruns.
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+/* Some people would argue that all sprintf uses should be warned about
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+ (for example, OpenBSD issues a link warning for it),
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+ since it can cause security holes due to buffer overruns.
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However, we believe that sprintf can be used safely, and is more
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efficient than snprintf in those safe cases; and as proof of our
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belief, we use sprintf in several gnulib modules. So this header
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171
octave-sparse.patch
Normal file
171
octave-sparse.patch
Normal file
@ -0,0 +1,171 @@
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# HG changeset patch
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# User David Bateman <dbateman@free.fr>
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# Date 1337385561 -7200
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# Node ID f2e72944847b9ec7cec586faa4c72ea91eb53881
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# Parent 997e05334f71269f16017ceb06a52cf33feced18
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Ensure sparse constructors have valid ridx and data indices even if they are zero matrices (bug #36104)
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diff --git a/liboctave/Sparse.cc b/liboctave/Sparse.cc
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--- a/liboctave/Sparse.cc
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+++ b/liboctave/Sparse.cc
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@@ -235,7 +235,7 @@
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(*current_liboctave_error_handler)
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("Sparse::Sparse (const dim_vector&): dimension mismatch");
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else
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- rep = new typename Sparse<T>::SparseRep (dv(0), dv(1));
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+ rep = new typename Sparse<T>::SparseRep (dv(0), dv(1), 0);
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}
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template <class T>
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@@ -301,11 +301,10 @@
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(*current_liboctave_error_handler)
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("sparse: column index %d out of bound %d", r.extent (nc), nc);
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- rep = new SparseRep (nr, nc);
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+ rep = new typename Sparse<T>::SparseRep (nr, nc, (nzm > 0 ? nzm : 0));
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dimensions = dim_vector (nr, nc);
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-
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octave_idx_type n = a.numel (), rl = r.length (nr), cl = c.length (nc);
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bool a_scalar = n == 1;
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if (a_scalar)
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@@ -324,6 +323,7 @@
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if (n == 1 && a(0) != T ())
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{
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change_capacity (nzm > 1 ? nzm : 1);
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+ xcidx(0) = 0;
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xridx(0) = r(0);
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xdata(0) = a(0);
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for (octave_idx_type j = 0; j < nc; j++)
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@@ -352,6 +352,7 @@
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new_nz += rd[i-1] != rd[i];
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// Allocate result.
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change_capacity (nzm > new_nz ? nzm : new_nz);
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+ xcidx (0) = 0;
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xcidx (1) = new_nz;
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octave_idx_type *rri = ridx ();
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T *rrd = data ();
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@@ -494,6 +495,7 @@
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new_nz += rd[i-1] != rd[i];
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// Allocate result.
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change_capacity (nzm > new_nz ? nzm : new_nz);
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+ xcidx(0) = 0;
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xcidx(1) = new_nz;
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octave_idx_type *rri = ridx ();
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T *rrd = data ();
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# HG changeset patch
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# User John W. Eaton <jwe@octave.org>
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# Date 1340304125 14400
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# Node ID 4663cc835c65873fe12b599bcab11ba4a8f5fb87
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# Parent f2e72944847b9ec7cec586faa4c72ea91eb53881
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Special-case removing rows or columns from empty sparse matrices
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* Sparse.cc (Sparse<T>::delete_elements): Don't attempt to preserve
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elements if nnz = 0; simply reshape if number of rows or columns is zero.
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diff --git a/liboctave/Sparse.cc b/liboctave/Sparse.cc
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--- a/liboctave/Sparse.cc
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+++ b/liboctave/Sparse.cc
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@@ -1240,16 +1240,31 @@
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gripe_del_index_out_of_range (false, idx_j.extent (nc), nc);
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else if (idx_j.is_cont_range (nc, lb, ub))
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{
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- const Sparse<T> tmp = *this;
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- octave_idx_type lbi = tmp.cidx(lb), ubi = tmp.cidx(ub), new_nz = nz - (ubi - lbi);
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- *this = Sparse<T> (nr, nc - (ub - lb), new_nz);
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- copy_or_memcpy (lbi, tmp.data (), data ());
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- copy_or_memcpy (lbi, tmp.ridx (), ridx ());
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- copy_or_memcpy (nz - ubi, tmp.data () + ubi, xdata () + lbi);
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- copy_or_memcpy (nz - ubi, tmp.ridx () + ubi, xridx () + lbi);
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- copy_or_memcpy (lb, tmp.cidx () + 1, cidx () + 1);
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- mx_inline_sub (nc - ub, xcidx () + lb + 1,
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- tmp.cidx () + ub + 1, ubi - lbi);
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+ if (lb == 0 && ub == nc)
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+ {
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+ // Delete all rows and columns.
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+ *this = Sparse<T> (nr, 0);
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+ }
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+ else if (nz == 0)
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+ {
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+ // No elements to preserve; adjust dimensions.
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+ *this = Sparse<T> (nr, nc - (ub - lb));
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+ }
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+ else
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+ {
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+ const Sparse<T> tmp = *this;
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+ octave_idx_type lbi = tmp.cidx(lb), ubi = tmp.cidx(ub),
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+ new_nz = nz - (ubi - lbi);
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+
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+ *this = Sparse<T> (nr, nc - (ub - lb), new_nz);
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+ copy_or_memcpy (lbi, tmp.data (), data ());
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+ copy_or_memcpy (lbi, tmp.ridx (), ridx ());
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+ copy_or_memcpy (nz - ubi, tmp.data () + ubi, xdata () + lbi);
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+ copy_or_memcpy (nz - ubi, tmp.ridx () + ubi, xridx () + lbi);
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+ copy_or_memcpy (lb, tmp.cidx () + 1, cidx () + 1);
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+ mx_inline_sub (nc - ub, xcidx () + lb + 1,
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+ tmp.cidx () + ub + 1, ubi - lbi);
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+ }
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}
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else
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*this = index (idx_i, idx_j.complement (nc));
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@@ -1262,24 +1277,40 @@
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gripe_del_index_out_of_range (false, idx_i.extent (nr), nr);
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else if (idx_i.is_cont_range (nr, lb, ub))
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{
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- // This is more memory-efficient than the approach below.
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- const Sparse<T> tmpl = index (idx_vector (0, lb), idx_j);
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- const Sparse<T> tmpu = index (idx_vector (ub, nr), idx_j);
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- *this = Sparse<T> (nr - (ub - lb), nc, tmpl.nnz () + tmpu.nnz ());
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- for (octave_idx_type j = 0, k = 0; j < nc; j++)
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+ if (lb == 0 && ub == nr)
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{
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- for (octave_idx_type i = tmpl.cidx(j); i < tmpl.cidx(j+1); i++)
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+ // Delete all rows and columns.
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+ *this = Sparse<T> (0, nc);
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+ }
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+ else if (nz == 0)
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+ {
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+ // No elements to preserve; adjust dimensions.
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+ *this = Sparse<T> (nr - (ub - lb), nc);
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+ }
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+ else
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+ {
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+ // This is more memory-efficient than the approach below.
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+ const Sparse<T> tmpl = index (idx_vector (0, lb), idx_j);
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+ const Sparse<T> tmpu = index (idx_vector (ub, nr), idx_j);
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+ *this = Sparse<T> (nr - (ub - lb), nc,
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+ tmpl.nnz () + tmpu.nnz ());
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+ for (octave_idx_type j = 0, k = 0; j < nc; j++)
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{
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- xdata(k) = tmpl.data(i);
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- xridx(k++) = tmpl.ridx(i);
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+ for (octave_idx_type i = tmpl.cidx(j); i < tmpl.cidx(j+1);
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+ i++)
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+ {
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+ xdata(k) = tmpl.data(i);
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+ xridx(k++) = tmpl.ridx(i);
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+ }
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+ for (octave_idx_type i = tmpu.cidx(j); i < tmpu.cidx(j+1);
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+ i++)
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+ {
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+ xdata(k) = tmpu.data(i);
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+ xridx(k++) = tmpu.ridx(i) + lb;
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+ }
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+
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+ xcidx(j+1) = k;
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}
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- for (octave_idx_type i = tmpu.cidx(j); i < tmpu.cidx(j+1); i++)
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- {
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- xdata(k) = tmpu.data(i);
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- xridx(k++) = tmpu.ridx(i) + lb;
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- }
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-
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- xcidx(j+1) = k;
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}
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}
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else
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|
21
octave.spec
21
octave.spec
@ -8,7 +8,7 @@
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%endif
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Name: octave
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||||
Version: 3.6.2
|
||||
Version: 3.6.3
|
||||
Release: 2%{?dist}
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||||
Summary: A high-level language for numerical computations
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Epoch: 6
|
||||
@ -24,8 +24,8 @@ Source1: macros.octave
|
||||
# https://savannah.gnu.org/bugs/index.php?32839
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||||
# Fix building packages from directories
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Patch2: octave-3.4.0-pkgbuilddir.patch
|
||||
# Update gnulib to handle gets deprecation
|
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Patch3: octave-gets.patch
|
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# Upstream patches to fix spase matrix handling
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Patch3: octave-sparse.patch
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||||
URL: http://www.octave.org
|
||||
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
|
||||
|
||||
@ -86,7 +86,7 @@ This package contains documentation for Octave.
|
||||
%prep
|
||||
%setup -q -n %{name}-%{version}%{?rctag}
|
||||
%patch2 -p1 -b .pkgbuilddir
|
||||
%patch3 -p1 -b .gets
|
||||
%patch3 -p1 -b .sparse
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||||
|
||||
# Check permissions
|
||||
find -name *.cc -exec chmod 644 {} \;
|
||||
@ -94,8 +94,7 @@ find -name *.cc -exec chmod 644 {} \;
|
||||
%build
|
||||
%global enable64 no
|
||||
export F77=gfortran
|
||||
# TODO: arpack (and others?) appear to be bundled in libcruft..
|
||||
# --with-arpack is not an option anymore
|
||||
# TODO: some items appear to be bundled in libcruft..
|
||||
# gl2ps.c is bundled. Anything else?
|
||||
%configure --enable-shared --disable-static --enable-64=%enable64 \
|
||||
--with-blas="-L%{_libdir}/atlas -lf77blas -latlas" --with-qrupdate \
|
||||
@ -259,6 +258,16 @@ fi
|
||||
|
||||
|
||||
%changelog
|
||||
* Thu Sep 6 2012 Orion Poplawski <orion[AT]cora.nwra com> - 6:3.6.3-2
|
||||
- Add upstream patch to fix sparse matrix test crash
|
||||
|
||||
* Wed Sep 5 2012 Orion Poplawski <orion[AT]cora.nwra com> - 6:3.6.3-1
|
||||
- Update to 3.6.3
|
||||
- Drop gets patch fixed upstream
|
||||
|
||||
* Fri Jul 20 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 6:3.6.2-3
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
|
||||
|
||||
* Thu Jul 5 2012 Jussi Lehtola <jussilehtola@fedoraproject.org> - 6:3.6.2-2
|
||||
- Build against OpenGL libraries.
|
||||
|
||||
|
Loading…
Reference in New Issue
Block a user