361 lines
8.2 KiB
RPMSpec
361 lines
8.2 KiB
RPMSpec
%global octpkg iso2mesh
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Name: octave-%{octpkg}
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Version: 1.9.1
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Release: 7%{?dist}
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Summary: A 3D surface and volumetric mesh generator for MATLAB/Octave
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# Main package: GPLv3+
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# Meshfix: GPLv2+
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# JMeshLib: GPLv2+
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# Tetgen: AGPLv3+
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License: GPLv3+ and GPLv2+ and AGPLv3+
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URL: http://iso2mesh.sf.net
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# the following utilities are called internally by iso2mesh (stored under a private folder),
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# this is needed for making outputs reproducible
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Source0: https://github.com/fangq/iso2mesh/archive/v%{version}/%{octpkg}-%{version}.tar.gz
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Source1: https://github.com/fangq/cork/archive/v0.9/cork-0.9.tar.gz
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Source2: https://github.com/fangq/meshfix/archive/v1.2.1/meshfix-1.2.1.tar.gz
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Source3: http://ftp.mcs.anl.gov/pub/petsc/externalpackages/tetgen1.5.1.tar.gz
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Patch0: meshfix-remove-rpath.patch
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ExcludeArch: armv7hl
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BuildRequires: cmake CGAL-devel SuperLU-devel blas-static gcc-c++ zlib-devel octave-devel
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%if 0%{?fedora} >=32
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Requires: octave mpfr-devel boost-devel SuperLU octave-jsonlab octave-jnifti octave-zmat
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%else
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Requires: octave CGAL SuperLU octave-jsonlab octave-jnifti octave-zmat
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%endif
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Requires(post): octave
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Requires(postun): octave
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%description
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Iso2Mesh is a MATLAB/Octave-based mesh generation toolbox,
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designed for easy creation of high quality surface and
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tetrahedral meshes from 3D volumetric images. It contains
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a rich set of mesh processing scripts/programs, working
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either independently or interacting with external free
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meshing utilities. Iso2Mesh toolbox can directly convert
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a 3D image stack, including binary, segmented or gray-scale
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images such as MRI or CT scans, into quality volumetric
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meshes. This makes it particularly suitable for multi-modality
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medical imaging data analysis and multi-physics modeling.
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Iso2Mesh is cross-platform and is compatible with both MATLAB
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and GNU Octave.
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%package -n %{octpkg}-demos
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Summary: Example datasets and scripts for the Iso2Mesh toolbox
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BuildArch: noarch
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Requires: octave octave-%{octpkg}
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Recommends: %{octpkg}-demos
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%description -n %{octpkg}-demos
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This package contains the demo script and sample datasets for octave-%{octpkg}.
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%prep
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%setup -q -b 1 -n %{octpkg}-%{version}
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%setup -q -T -D -b 2 -n meshfix-1.2.1
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%patch0 -p1
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%setup -q -T -D -b 3 -n %{octpkg}-%{version}
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rm -rf tools/cork
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rm -rf tools/meshfix
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rm -rf tools/tetgen
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mv ../cork-0.9 tools/cork
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mv ../meshfix-1.2.1 tools/meshfix
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mv ../tetgen1.5.1 tools/tetgen
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rm -rf bin/*.mex* bin/*.exe bin/*.dll
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cp COPYING.txt COPYING
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cat > DESCRIPTION << EOF
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Name: %{octpkg}
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Version: %{version}
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Date: %(date +"%Y-%d-%m")
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Title: %{summary}
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Author: Qianqian Fang <fangqq@gmail.com>
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Maintainer: Qianqian Fang <fangqq@gmail.com>
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Description: Iso2Mesh is a MATLAB/Octave-based mesh generation toolbox,
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designed for easy creation of high quality surface and
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tetrahedral meshes from 3D volumetric images. It contains
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a rich set of mesh processing scripts/programs, working
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either independently or interacting with external free
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meshing utilities. Iso2Mesh toolbox can directly convert
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a 3D image stack, including binary, segmented or gray-scale
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images such as MRI or CT scans, into quality volumetric
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meshes. This makes it particularly suitable for multi-modality
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medical imaging data analysis and multi-physics modeling.
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Iso2Mesh is cross-platform and is compatible with both MATLAB
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and GNU Octave.
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URL: %{url}
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Depends: jnifti, jsonlab, zmat
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Categories: Mesh
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EOF
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cat > INDEX << EOF
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iso2mesh >> Iso2Mesh
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Iso2Mesh
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advancefront
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barydualmesh
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bbxflatsegment
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binsurface
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bwislands
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cgals2m
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cgalv2m
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deislands2d
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deislands3d
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delendelem
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deletemeshfile
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edgeneighbors
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elemfacecenter
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elemvolume
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extractloops
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extrudecurve
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extrudesurf
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faceneighbors
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fallbackexeext
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fillholes3d
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fillsurf
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finddisconnsurf
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flatsegment
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getexeext
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getintersecttri
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getoptkey
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getplanefrom3pt
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getvarfrom
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highordertet
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i2m
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imedge3d
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img2mesh
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innersurf
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insurface
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internalpoint
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iso2meshver
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isoctavemesh
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jsonopt
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latticegrid
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m2v
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maskdist
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maxsurf
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mcpath
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memmapstream
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mergemesh
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mergestruct
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mergesurf
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mesh2mask
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mesh2vol
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meshabox
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meshacylinder
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meshanellip
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meshasphere
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meshcentroid
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meshcheckrepair
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meshconn
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meshcylinders
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meshedge
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mesheuler
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meshface
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meshgrid5
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meshgrid6
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meshinterp
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meshquality
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meshrefine
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meshremap
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meshreorient
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meshresample
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meshunitsphere
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mwpath
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neighborelem
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nodevolume
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orderloopedge
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orthdisk
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outersurf
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plotedges
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plotmesh
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plotsurf
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plottetra
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qmeshcut
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raysurf
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raytrace
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readasc
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readgts
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readinr
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readmedit
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readmptiff
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readnirfast
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readoff
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readsmf
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readtetgen
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remeshsurf
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removedupelem
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removedupnodes
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removeisolatednode
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removeisolatedsurf
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rotatevec3d
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rotmat2vec
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s2m
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s2v
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saveabaqus
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saveasc
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savebinstl
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savedxf
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savegts
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saveinr
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savejmesh
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savejson
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savemedit
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savemphtxt
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savemsh
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savenirfast
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saveoff
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savesmf
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savestl
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savesurfpoly
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savetetgenele
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savetetgennode
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savevrml
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smoothbinvol
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smoothsurf
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sms
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sortmesh
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surf2mesh
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surf2vol
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surf2volz
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surfaceclean
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surfacenorm
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surfboolean
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surfdiffuse
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surfedge
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surfinterior
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surfpart
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surfplane
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surfreorient
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surfseeds
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surfvolume
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thickenbinvol
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thinbinvol
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uniqedges
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uniqfaces
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v2m
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v2s
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varargin2struct
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vol2mesh
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vol2restrictedtri
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vol2surf
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volface
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volmap2mesh
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EOF
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mkdir -p inst/
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rm -rf base64decode base64encode fast_match_bracket gzipdecode gzipencode \
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jdatadecode jdataencode jnifticreate loadjnifti loadjson loadmsgpack \
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loadnifti loadubjson lz4decode lz4encode lz4hcdecode lz4hcencode lzipdecode \
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lzipencode lzmadecode lzmaencode match_bracket nestbracket2dim nifticreate \
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nii2jnii niicodemap niiformat readnifti savebnii savejnifti savejnii \
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savemsgpack savenifti saveubjson zlibdecode zlibencode
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mv *.m inst/
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mv img2mesh.fig inst/
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# Fix jmeshlib build flags
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sed -e "s|-Wall|%{optflags}|;s|^LIBS = |&$RPM_LD_FLAGS |" \
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-i tools/meshfix/contrib/JMeshLib/test/Makefile
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# Fix tetgen build flags
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sed -e "s|^\(CXXFLAGS = \).*|\1%{optflags} $RPM_LD_FLAGS|" \
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-e "s|-O0|%{optflags} $RPM_LD_FLAGS|" \
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-i tools/tetgen/makefile
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# Fix cgal 5.1 build error
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sed -e "s/Midpoint_and_length/Midpoint_placement/g" \
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-i tools/cgalsimp2/edge_collapse_enriched_polyhedron.cpp
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%build
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%set_build_flags
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pushd tools
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# can't use make_build macro below because parallel make with CGAL exhausts
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# vm's memory and crash the building process, use sequential make instead
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make USERCCFLAGS="%{optflags}"
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popd
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pushd bin
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ln -s tetgen1.5 tetgen
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popd
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mkdir inst/bin
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pushd bin
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for exec in *; do
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ln -s %{_libexecdir}/%{octpkg}/$exec ../inst/bin/$exec
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done
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popd
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%octave_pkg_build
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%if 0%{?fedora} <=30
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%global octave_tar_suffix any-none
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%endif
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%install
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%octave_pkg_install
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install -m 0755 -vd %{buildroot}%{_libexecdir}/%{octpkg}
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install -m 0755 -vp bin/* %{buildroot}%{_libexecdir}/%{octpkg}/
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%post
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%octave_cmd pkg rebuild
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%preun
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%octave_pkg_preun
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%postun
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%octave_cmd pkg rebuild
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%files
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%license COPYING.txt
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%doc README.txt
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%doc Content.txt
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%doc AUTHORS.txt
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%doc ChangeLog.txt
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%dir %{octpkgdir}
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%dir %{octpkgdir}/doc
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%dir %{octpkgdir}/bin
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%{_libexecdir}/%{octpkg}
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%{octpkgdir}/doc/*
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%{octpkgdir}/bin/*
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%{octpkgdir}/*.m
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%{octpkgdir}/*.fig
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%doc %{octpkgdir}/doc-cache
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%{octpkgdir}/packinfo
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%files -n %{octpkg}-demos
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%license COPYING.txt
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%doc sample
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%changelog
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* Fri Sep 04 2020 Qianqian Fang <fangqq@gmail.com> - 1.9.1-8
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- Fix cgal build error on F33
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* Sat Aug 01 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.9.1-7
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- Second attempt - Rebuilt for
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https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
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* Tue Jul 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.9.1-6
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
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* Wed Jan 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.9.1-5
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
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* Mon Nov 25 2019 Jerry James <loganjerry@gmail.com> - 1.9.1-4
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- Rebuild for mpfr 4
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- Use Fedora build flags when building jmeshlib and tetgen
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* Fri Oct 11 2019 Qianqian Fang <fangqq@gmail.com> - 1.9.1-3
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- Define octave package-level dependency via the DESCRIPTION file
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- Remove gmp-devel from Requires
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* Thu Oct 10 2019 Qianqian Fang <fangqq@gmail.com> - 1.9.1-2
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- Fix licenses
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- Move binaries to libexec
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* Wed Oct 02 2019 Qianqian Fang <fangqq@gmail.com> - 1.9.1-1
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- Initial package
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