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octave-iso2mesh/octave-iso2mesh.spec

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%global octpkg iso2mesh
Name: octave-%{octpkg}
Version: 1.9.6
Release: 11%{?dist}
Summary: A 3D surface and volumetric mesh generator for MATLAB/Octave
# Main package: GPLv3+
# Meshfix: GPLv2+
# JMeshLib: GPLv2+
# Tetgen: AGPLv3+
License: GPLv3+ and GPLv2+ and AGPLv3+
URL: http://iso2mesh.sf.net
# the following utilities are called internally by iso2mesh (stored under a private folder),
# this is needed for making outputs reproducible
Source0: https://github.com/fangq/iso2mesh/archive/v%{version}/%{octpkg}-%{version}.tar.gz
Source1: https://github.com/fangq/cork/archive/v0.9.1/cork-0.9.1.tar.gz
Source2: https://github.com/fangq/meshfix/archive/v1.2.2/meshfix-1.2.2.tar.gz
Source3: http://ftp.mcs.anl.gov/pub/petsc/externalpackages/tetgen1.5.1.tar.gz
# Policy CMP0064 is not set: Support new TEST if() operator.
# See also https://github.com/CGAL/cgal/issues/5857
Patch0: iso2mesh-1.9.6-CMakeCMP0064.patch
# Fix the incorrect detection of Boost version
# > -- NOTICE: This program requires Boost >= 1.34.1, and will not be compiled.
Patch1: iso2mesh-1.9.6-recent_Boost_version.patch
Patch2: octave-iso2mesh-c99.patch
ExcludeArch: armv7hl
BuildRequires: make
BuildRequires: cmake CGAL-devel SuperLU-devel gcc-c++ zlib-devel octave-devel
%if 0%{?fedora} >=32
Requires: octave mpfr-devel boost-devel SuperLU octave-jsonlab octave-jnifti octave-zmat
%else
Requires: octave CGAL SuperLU octave-jsonlab octave-jnifti octave-zmat
%endif
Requires(post): octave
Requires(postun): octave
%description
Iso2Mesh is a MATLAB/Octave-based mesh generation toolbox,
designed for easy creation of high quality surface and
tetrahedral meshes from 3D volumetric images. It contains
a rich set of mesh processing scripts/programs, working
either independently or interacting with external free
meshing utilities. Iso2Mesh toolbox can directly convert
a 3D image stack, including binary, segmented or gray-scale
images such as MRI or CT scans, into quality volumetric
meshes. This makes it particularly suitable for multi-modality
medical imaging data analysis and multi-physics modeling.
Iso2Mesh is cross-platform and is compatible with both MATLAB
and GNU Octave.
%package -n %{octpkg}-demos
Summary: Example datasets and scripts for the Iso2Mesh toolbox
BuildArch: noarch
Requires: octave octave-%{octpkg}
Recommends: %{octpkg}-demos
%description -n %{octpkg}-demos
This package contains the demo script and sample datasets for octave-%{octpkg}.
%prep
%setup -q -b 1 -n %{octpkg}-%{version}
%setup -q -T -D -b 2 -n meshfix-1.2.2
%setup -q -T -D -b 3 -n %{octpkg}-%{version}
%patch -P 0 -z .bak -p1
%patch -P 1 -z .bak -p1
rm -rf tools/cork
rm -rf tools/meshfix
rm -rf tools/tetgen
mv ../cork-0.9.1 tools/cork
mv ../meshfix-1.2.2 tools/meshfix
mv ../tetgen1.5.1 tools/tetgen
%patch -P 2 -p1
rm -rf bin/*.mex* bin/*.exe bin/*.dll
cp COPYING.txt COPYING
mkdir -p inst/
rm -rf base64decode base64encode fast_match_bracket gzipdecode gzipencode \
jdatadecode jdataencode jnifticreate loadjnifti loadjson loadmsgpack \
loadnifti loadubjson lz4decode lz4encode lz4hcdecode lz4hcencode lzipdecode \
lzipencode lzmadecode lzmaencode match_bracket nestbracket2dim nifticreate \
nii2jnii niicodemap niiformat readnifti savebnii savejnifti savejnii \
savemsgpack savenifti saveubjson zlibdecode zlibencode
mv *.m inst/
mv img2mesh.fig inst/
# Fix jmeshlib build flags
sed -e "s|-Wall|%{optflags}|;s|^LIBS = |&$RPM_LD_FLAGS |" \
-i tools/meshfix/contrib/JMeshLib/test/Makefile
# Link FlexiBLAS instead of BLAS
sed -e "s| blas| flexiblas|" -i tools/meshfix/CMakeLists.txt
# Fix tetgen build flags
sed -e "s|^\(CXXFLAGS = \).*|\1%{optflags} $RPM_LD_FLAGS|" \
-e "s|-O0|%{optflags} $RPM_LD_FLAGS|" \
-i tools/tetgen/makefile
%build
%set_build_flags
%if 0%{?__isa_bits} == 32
# Reduce the debuginfo level to avoid virtual memory exhaustion
CXXFLAGS="${CXXFLAGS-} -g1"
%endif
pushd tools
# can't use make_build macro below because parallel make with CGAL exhausts
# vm's memory and crash the building process, use sequential make instead
make USERCCFLAGS="%{optflags}"
popd
pushd bin
ln -s tetgen1.5 tetgen
popd
mkdir inst/bin
pushd bin
for exec in *; do
ln -s %{_libexecdir}/%{octpkg}/$exec ../inst/bin/$exec
done
popd
%octave_pkg_build
%if 0%{?fedora} <=30
%global octave_tar_suffix any-none
%endif
%install
%octave_pkg_install
install -m 0755 -vd %{buildroot}%{_libexecdir}/%{octpkg}
install -m 0755 -vp bin/* %{buildroot}%{_libexecdir}/%{octpkg}/
%post
%octave_cmd pkg rebuild
%preun
%octave_pkg_preun
%postun
%octave_cmd pkg rebuild
%files
%license COPYING.txt
%doc README.txt
%doc Content.txt
%doc AUTHORS.txt
%doc ChangeLog.txt
%dir %{octpkgdir}
%dir %{octpkgdir}/doc
%dir %{octpkgdir}/bin
%{_libexecdir}/%{octpkg}
%{octpkgdir}/doc/*
%{octpkgdir}/bin/*
%{octpkgdir}/*.m
%{octpkgdir}/*.fig
%doc %{octpkgdir}/doc-cache
%{octpkgdir}/packinfo
%files -n %{octpkg}-demos
%license COPYING.txt
%doc sample
%changelog
* Fri Apr 14 2023 Florian Weimer <fweimer@redhat.com> - 1.9.6-11
- Port to C99
* Sun Apr 09 2023 Orion Poplawski <orion@nwra.com> - 1.9.6-10
- Rebuild for octave 8.1.0
* Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.9.6-9
- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.9.6-8
- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Wed Jun 01 2022 Orion Poplawski <orion@nwra.com> - 1.9.6-7
- Rebuild for octave 7.1
* Fri May 06 2022 Iñaki Úcar <iucar@fedoraproject.org> - 1.9.6-6
- https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
* Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.9.6-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Sat Oct 30 2021 Antonio Trande <sagitter@fedoraproject.org> - 1.9.6-3
- Rebuild for SuperLU-5.3.0
* Thu Jul 22 2021 Qianqian Fang <fangqq@gmail.com> - 1.9.6-3
- Apply makefile patch by Laurent Rineau, fix CGAL build error on F35, fix #1917433
* Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.9.6-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
* Fri Sep 04 2020 Qianqian Fang <fangqq@gmail.com> - 1.9.6-1
- New upstream release 1.9.6
* Sat Aug 01 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.9.1-7
- Fix cgal build error on F34
- Second attempt - Rebuilt for
https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
* Tue Jul 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.9.1-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
* Wed Jan 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.9.1-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
* Mon Nov 25 2019 Jerry James <loganjerry@gmail.com> - 1.9.1-4
- Rebuild for mpfr 4
- Use Fedora build flags when building jmeshlib and tetgen
* Fri Oct 11 2019 Qianqian Fang <fangqq@gmail.com> - 1.9.1-3
- Define octave package-level dependency via the DESCRIPTION file
- Remove gmp-devel from Requires
* Thu Oct 10 2019 Qianqian Fang <fangqq@gmail.com> - 1.9.1-2
- Fix licenses
- Move binaries to libexec
* Wed Oct 02 2019 Qianqian Fang <fangqq@gmail.com> - 1.9.1-1
- Initial package
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