Compare commits
7 Commits
| Author | SHA1 | Date | |
|---|---|---|---|
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e1e723cf36 | ||
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fb2a3cae1e | ||
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de296140dc | ||
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67929e2ebb | ||
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08dc5d3fec |
6
.gitignore
vendored
6
.gitignore
vendored
@ -12,9 +12,3 @@ netcdf-4.1.1.tar.gz
|
||||
/netcdf-4.3.2.tar.gz
|
||||
/netcdf-4.3.3.tar.gz
|
||||
/netcdf-4.3.3.1.tar.gz
|
||||
/netcdf-4.4.0.tar.gz
|
||||
/netcdf-4.4.1.tar.gz
|
||||
/netcdf-4.4.1.1.tar.gz
|
||||
/netcdf-4.6.2.1.tar.gz
|
||||
/netcdf-4.6.3.tar.gz
|
||||
/netcdf-4.7.0.tar.gz
|
||||
|
||||
25
netcdf-pkgconfig.patch
Normal file
25
netcdf-pkgconfig.patch
Normal file
@ -0,0 +1,25 @@
|
||||
diff -up netcdf-4.2.1-rc1/nc-config.in.pkgconfig netcdf-4.2.1-rc1/nc-config.in
|
||||
--- netcdf-4.2.1-rc1/nc-config.in.pkgconfig 2012-06-18 12:33:10.000000000 -0600
|
||||
+++ netcdf-4.2.1-rc1/nc-config.in 2012-06-20 16:44:29.292019812 -0600
|
||||
@@ -6,12 +6,10 @@
|
||||
|
||||
prefix=@prefix@
|
||||
exec_prefix=${prefix}
|
||||
-libdir=${exec_prefix}/lib
|
||||
includedir=${prefix}/include
|
||||
|
||||
cc="@CC@"
|
||||
cflags=" -I${includedir} @CPPFLAGS@"
|
||||
-libs="-L${libdir} @NC_LIBS@"
|
||||
has_dap="@HAS_DAP@"
|
||||
has_nc2="@HAS_NC2@"
|
||||
has_nc4="@HAS_NC4@"
|
||||
@@ -189,7 +187,7 @@ while test $# -gt 0; do
|
||||
;;
|
||||
|
||||
--libs)
|
||||
- echo $libs
|
||||
+ pkg-config netcdf --libs
|
||||
;;
|
||||
|
||||
--prefix)
|
||||
204
netcdf.spec
204
netcdf.spec
@ -1,22 +1,26 @@
|
||||
Name: netcdf
|
||||
Version: 4.7.0
|
||||
Release: 2%{?dist}
|
||||
Version: 4.3.3.1
|
||||
Release: 5%{?dist}
|
||||
Summary: Libraries for the Unidata network Common Data Form
|
||||
|
||||
Group: Applications/Engineering
|
||||
License: NetCDF
|
||||
URL: http://www.unidata.ucar.edu/software/netcdf/
|
||||
Source0: https://github.com/Unidata/netcdf-c/archive/v%{version}.tar.gz#/%{name}-%{version}.tar.gz
|
||||
# Use github tarball - the unidata download is missing files
|
||||
#Source0: https://github.com/Unidata/netcdf-c/archive/v%{version}.tar.gz#/%{name}-%{version}.tar.gz
|
||||
Source0: http://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-%{version}.tar.gz
|
||||
# Use pkgconfig in nc-config to avoid multi-lib issues
|
||||
Patch0: netcdf-pkgconfig.patch
|
||||
|
||||
BuildRequires: libtool
|
||||
BuildRequires: chrpath
|
||||
BuildRequires: doxygen
|
||||
BuildRequires: hdf-static
|
||||
BuildRequires: hdf5-devel
|
||||
BuildRequires: hdf5-devel >= 1.8.4
|
||||
BuildRequires: gawk
|
||||
BuildRequires: libcurl-devel
|
||||
BuildRequires: m4
|
||||
BuildRequires: zlib-devel
|
||||
%ifarch %{valgrind_arches}
|
||||
%ifnarch s390 s390x %{arm}
|
||||
BuildRequires: valgrind
|
||||
%endif
|
||||
#mpiexec segfaults if ssh is not present
|
||||
@ -24,14 +28,23 @@ BuildRequires: valgrind
|
||||
BuildRequires: openssh-clients
|
||||
Requires: hdf5%{?_isa} = %{_hdf5_version}
|
||||
|
||||
# Don't let mpi versions provide libraries
|
||||
%global __provides_exclude_from ^%{_libdir}/(mpich|openmpi)
|
||||
# Don't require hdf5 library, might be mpi, use explicit requires
|
||||
%global __requires_exclude ^libhdf5
|
||||
|
||||
%global with_mpich 1
|
||||
%global with_openmpi 1
|
||||
%if 0%{?rhel} && 0%{?rhel} <= 6
|
||||
%if 0%{?rhel} && 0%{?rhel} <= 6 || 0%{?fedora} && 0%{?fedora} < 20
|
||||
%ifarch ppc64
|
||||
# No mpich on ppc64 in EL6
|
||||
%global with_mpich 0
|
||||
%endif
|
||||
%endif
|
||||
%ifarch s390 s390x
|
||||
# No openmpi on s390(x)
|
||||
%global with_openmpi 0
|
||||
%endif
|
||||
|
||||
%if %{with_mpich}
|
||||
%global mpi_list mpich
|
||||
@ -74,6 +87,7 @@ NetCDF data is:
|
||||
|
||||
%package devel
|
||||
Summary: Development files for netcdf
|
||||
Group: Development/Libraries
|
||||
Requires: %{name}%{?_isa} = %{version}-%{release}
|
||||
Requires: pkgconfig%{?_isa}
|
||||
Requires: hdf5-devel%{?_isa}
|
||||
@ -86,6 +100,7 @@ man pages.
|
||||
|
||||
%package static
|
||||
Summary: Static libs for netcdf
|
||||
Group: Development/Libraries
|
||||
Requires: %{name}%{?_isa} = %{version}-%{release}
|
||||
|
||||
%description static
|
||||
@ -95,11 +110,11 @@ This package contains the netCDF C static libs.
|
||||
%if %{with_mpich}
|
||||
%package mpich
|
||||
Summary: NetCDF mpich libraries
|
||||
Group: Development/Libraries
|
||||
Requires: mpich%{?_isa}
|
||||
Requires: hdf5-mpich%{?_isa} = %{_hdf5_version}
|
||||
BuildRequires: mpich-devel
|
||||
BuildRequires: hdf5-mpich-devel >= 1.8.4
|
||||
Provides: %{name}-mpich2 = %{version}-%{release}
|
||||
Obsoletes: %{name}-mpich2 < 4.3.0-4
|
||||
|
||||
%description mpich
|
||||
NetCDF parallel mpich libraries
|
||||
@ -107,12 +122,12 @@ NetCDF parallel mpich libraries
|
||||
|
||||
%package mpich-devel
|
||||
Summary: NetCDF mpich development files
|
||||
Group: Development/Libraries
|
||||
Requires: %{name}-mpich%{?_isa} = %{version}-%{release}
|
||||
Requires: mpich%{?_isa}
|
||||
Requires: pkgconfig%{?_isa}
|
||||
Requires: hdf5-mpich-devel%{?_isa}
|
||||
Requires: libcurl-devel%{?_isa}
|
||||
Provides: %{name}-mpich2-devel = %{version}-%{release}
|
||||
Obsoletes: %{name}-mpich2-devel < 4.3.0-4
|
||||
|
||||
%description mpich-devel
|
||||
NetCDF parallel mpich development files
|
||||
@ -120,9 +135,8 @@ NetCDF parallel mpich development files
|
||||
|
||||
%package mpich-static
|
||||
Summary: NetCDF mpich static libraries
|
||||
Group: Development/Libraries
|
||||
Requires: %{name}-mpich-devel%{?_isa} = %{version}-%{release}
|
||||
Provides: %{name}-mpich2-static = %{version}-%{release}
|
||||
Obsoletes: %{name}-mpich2-static < 4.3.0-4
|
||||
|
||||
%description mpich-static
|
||||
NetCDF parallel mpich static libraries
|
||||
@ -132,6 +146,8 @@ NetCDF parallel mpich static libraries
|
||||
%if %{with_openmpi}
|
||||
%package openmpi
|
||||
Summary: NetCDF openmpi libraries
|
||||
Group: Development/Libraries
|
||||
Requires: openmpi%{?_isa}
|
||||
Requires: hdf5-openmpi%{?_isa} = %{_hdf5_version}
|
||||
BuildRequires: openmpi-devel
|
||||
BuildRequires: hdf5-openmpi-devel >= 1.8.4
|
||||
@ -142,6 +158,7 @@ NetCDF parallel openmpi libraries
|
||||
|
||||
%package openmpi-devel
|
||||
Summary: NetCDF openmpi development files
|
||||
Group: Development/Libraries
|
||||
Requires: %{name}-openmpi%{_isa} = %{version}-%{release}
|
||||
Requires: openmpi-devel%{?_isa}
|
||||
Requires: pkgconfig%{?_isa}
|
||||
@ -154,6 +171,7 @@ NetCDF parallel openmpi development files
|
||||
|
||||
%package openmpi-static
|
||||
Summary: NetCDF openmpi static libraries
|
||||
Group: Development/Libraries
|
||||
Requires: %{name}-openmpi-devel%{?_isa} = %{version}-%{release}
|
||||
|
||||
%description openmpi-static
|
||||
@ -162,31 +180,32 @@ NetCDF parallel openmpi static libraries
|
||||
|
||||
|
||||
%prep
|
||||
%autosetup -p1 -n %{name}-c-%{version}
|
||||
%setup -q
|
||||
%patch0 -p1 -b .pkgconfig
|
||||
|
||||
|
||||
%build
|
||||
#Do out of tree builds
|
||||
%global _configure ../configure
|
||||
#Common configure options
|
||||
export LDFLAGS="%{__global_ldflags} -L%{_libdir}/hdf"
|
||||
%global configure_opts \\\
|
||||
--enable-shared \\\
|
||||
--enable-netcdf-4 \\\
|
||||
--enable-dap \\\
|
||||
--enable-extra-example-tests \\\
|
||||
CPPFLAGS=-I%{_includedir}/hdf \\\
|
||||
LIBS="-ltirpc" \\\
|
||||
LIBS="-ldf -ljpeg" \\\
|
||||
--enable-hdf4 \\\
|
||||
--disable-dap-remote-tests \\\
|
||||
%{nil}
|
||||
export LDFLAGS="%{__global_ldflags} -L%{_libdir}/hdf"
|
||||
|
||||
# Serial build
|
||||
mkdir build
|
||||
pushd build
|
||||
ln -s ../configure .
|
||||
%configure %{configure_opts}
|
||||
%make_build
|
||||
make %{?_smp_mflags}
|
||||
popd
|
||||
|
||||
# MPI builds
|
||||
@ -205,8 +224,12 @@ do
|
||||
--includedir=%{_includedir}/$mpi-%{_arch} \
|
||||
--datarootdir=%{_libdir}/$mpi/share \
|
||||
--mandir=%{_libdir}/$mpi/share/man \
|
||||
%ifnarch s390 s390x
|
||||
--enable-parallel-tests
|
||||
%make_build
|
||||
%else
|
||||
%{nil}
|
||||
%endif
|
||||
make %{?_smp_mflags}
|
||||
module purge
|
||||
popd
|
||||
done
|
||||
@ -228,40 +251,37 @@ done
|
||||
|
||||
|
||||
%check
|
||||
# Set to 1 to fail if tests fail
|
||||
fail=1
|
||||
make -C build check || ( cat build/*/test-suite.log && exit $fail )
|
||||
# Allow openmpi to run with more processes than cores
|
||||
export OMPI_MCA_rmaps_base_oversubscribe=1
|
||||
make -C build check
|
||||
# This is hanging here:
|
||||
# Testing very simple parallel I/O with 4 processors...
|
||||
# *** tst_parallel testing very basic parallel access.
|
||||
for mpi in %{mpi_list}
|
||||
do
|
||||
module load mpi/$mpi-%{_arch}
|
||||
make -C $mpi check || ( cat $mpi/*/test-suite.log && exit $fail )
|
||||
make -C $mpi check
|
||||
module purge
|
||||
done
|
||||
|
||||
|
||||
%ldconfig_scriptlets
|
||||
%post -p /sbin/ldconfig
|
||||
|
||||
%postun -p /sbin/ldconfig
|
||||
|
||||
|
||||
%files
|
||||
%license COPYRIGHT
|
||||
%doc README.md RELEASE_NOTES.md
|
||||
%doc COPYRIGHT README.md RELEASE_NOTES.md
|
||||
%{_bindir}/nccopy
|
||||
%{_bindir}/ncdump
|
||||
%{_bindir}/ncgen
|
||||
%{_bindir}/ncgen3
|
||||
%{_libdir}/*.so.15*
|
||||
%{_libdir}/*.so.7*
|
||||
%{_mandir}/man1/*
|
||||
|
||||
%files devel
|
||||
%doc examples
|
||||
%{_bindir}/nc-config
|
||||
%{_includedir}/netcdf.h
|
||||
%{_includedir}/netcdf_aux.h
|
||||
%{_includedir}/netcdf_filter.h
|
||||
%{_includedir}/netcdf_meta.h
|
||||
%{_includedir}/netcdf_mem.h
|
||||
%{_libdir}/libnetcdf.settings
|
||||
%{_libdir}/*.so
|
||||
%{_libdir}/pkgconfig/netcdf.pc
|
||||
@ -272,23 +292,17 @@ done
|
||||
|
||||
%if %{with_mpich}
|
||||
%files mpich
|
||||
%license COPYRIGHT
|
||||
%doc README.md RELEASE_NOTES.md
|
||||
%doc COPYRIGHT README.md RELEASE_NOTES.md
|
||||
%{_libdir}/mpich/bin/nccopy
|
||||
%{_libdir}/mpich/bin/ncdump
|
||||
%{_libdir}/mpich/bin/ncgen
|
||||
%{_libdir}/mpich/bin/ncgen3
|
||||
%{_libdir}/mpich/lib/*.so.15*
|
||||
%{_libdir}/mpich/lib/*.so.7*
|
||||
%doc %{_libdir}/mpich/share/man/man1/*.1*
|
||||
|
||||
%files mpich-devel
|
||||
%{_libdir}/mpich/bin/nc-config
|
||||
%{_includedir}/mpich-%{_arch}/netcdf.h
|
||||
%{_includedir}/mpich-%{_arch}/netcdf_aux.h
|
||||
%{_includedir}/mpich-%{_arch}/netcdf_filter.h
|
||||
%{_includedir}/mpich-%{_arch}/netcdf_meta.h
|
||||
%{_includedir}/mpich-%{_arch}/netcdf_mem.h
|
||||
%{_includedir}/mpich-%{_arch}/netcdf_par.h
|
||||
%{_includedir}/mpich-%{_arch}
|
||||
%{_libdir}/mpich/lib/libnetcdf.settings
|
||||
%{_libdir}/mpich/lib/*.so
|
||||
%{_libdir}/mpich/lib/pkgconfig/%{name}.pc
|
||||
@ -300,23 +314,17 @@ done
|
||||
|
||||
%if %{with_openmpi}
|
||||
%files openmpi
|
||||
%license COPYRIGHT
|
||||
%doc README.md RELEASE_NOTES.md
|
||||
%doc COPYRIGHT README.md RELEASE_NOTES.md
|
||||
%{_libdir}/openmpi/bin/nccopy
|
||||
%{_libdir}/openmpi/bin/ncdump
|
||||
%{_libdir}/openmpi/bin/ncgen
|
||||
%{_libdir}/openmpi/bin/ncgen3
|
||||
%{_libdir}/openmpi/lib/*.so.15*
|
||||
%{_libdir}/openmpi/lib/*.so.7*
|
||||
%doc %{_libdir}/openmpi/share/man/man1/*.1*
|
||||
|
||||
%files openmpi-devel
|
||||
%{_libdir}/openmpi/bin/nc-config
|
||||
%{_includedir}/openmpi-%{_arch}/netcdf.h
|
||||
%{_includedir}/openmpi-%{_arch}/netcdf_aux.h
|
||||
%{_includedir}/openmpi-%{_arch}/netcdf_filter.h
|
||||
%{_includedir}/openmpi-%{_arch}/netcdf_meta.h
|
||||
%{_includedir}/openmpi-%{_arch}/netcdf_mem.h
|
||||
%{_includedir}/openmpi-%{_arch}/netcdf_par.h
|
||||
%{_includedir}/openmpi-%{_arch}
|
||||
%{_libdir}/openmpi/lib/libnetcdf.settings
|
||||
%{_libdir}/openmpi/lib/*.so
|
||||
%{_libdir}/openmpi/lib/pkgconfig/%{name}.pc
|
||||
@ -328,87 +336,9 @@ done
|
||||
|
||||
|
||||
%changelog
|
||||
* Thu Jul 25 2019 Fedora Release Engineering <releng@fedoraproject.org> - 4.7.0-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
|
||||
|
||||
* Mon Jun 17 2019 Orion Poplawski <orion@nwra.com> - 4.7.0-1
|
||||
- Update to 4.7.0
|
||||
|
||||
* Sat Mar 16 2019 Orion Poplawski <orion@nwra.com> - 4.6.3-1
|
||||
- Update to 4.6.3
|
||||
|
||||
* Thu Feb 14 2019 Orion Poplawski <orion@nwra.com> - 4.4.1.1-12
|
||||
- Rebuild for openmpi 3.1.3
|
||||
|
||||
* Fri Feb 01 2019 Fedora Release Engineering <releng@fedoraproject.org> - 4.4.1.1-11
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
|
||||
|
||||
* Fri Jul 13 2018 Fedora Release Engineering <releng@fedoraproject.org> - 4.4.1.1-10
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
|
||||
|
||||
* Mon Apr 09 2018 Orion Poplawski <orion@nwra.com> - 4.4.1.1-9
|
||||
- Run libtoolize to not strip link flags (bug #1548732)
|
||||
|
||||
* Thu Feb 08 2018 Fedora Release Engineering <releng@fedoraproject.org> - 4.4.1.1-8
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
|
||||
|
||||
* Fri Feb 02 2018 Orion Poplawski <orion@cora.nwra.com> - 4.4.1.1-7
|
||||
- Rebuild for gcc 8.0
|
||||
|
||||
* Thu Aug 03 2017 Fedora Release Engineering <releng@fedoraproject.org> - 4.4.1.1-6
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
|
||||
|
||||
* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 4.4.1.1-5
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
|
||||
|
||||
* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 4.4.1.1-4
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
|
||||
|
||||
* Thu Dec 08 2016 Dan Horák <dan[at]danny.cz> - 4.4.1.1-3
|
||||
- Enable openmpi for s390(x) on F>=26
|
||||
|
||||
* Tue Dec 06 2016 Orion Poplawski <orion@cora.nwra.com> - 4.4.1.1-2
|
||||
- Rebuild for hdf5 1.8.18
|
||||
|
||||
* Tue Nov 29 2016 Orion Poplawski <orion@cora.nwra.com> - 4.4.1.1-1
|
||||
- Update to 4.4.1.1
|
||||
- Add patch to fix mpi tests compilation
|
||||
|
||||
* Fri Oct 21 2016 Orion Poplawski <orion@cora.nwra.com> - 4.4.1-4
|
||||
- Rebuild for openmpi 2.0
|
||||
|
||||
* Fri Aug 12 2016 Michal Toman <mtoman@fedoraproject.org> - 4.4.1-3
|
||||
- No valgrind on MIPS
|
||||
- Enable valgrind on arm
|
||||
|
||||
* Thu Jul 7 2016 Orion Poplawski <orion@cora.nwra.com> - 4.4.1-2
|
||||
- Add upstream patch to fix hashmap issue
|
||||
|
||||
* Wed Jun 29 2016 Orion Poplawski <orion@cora.nwra.com> - 4.4.1-1
|
||||
- Update to 4.4.1
|
||||
|
||||
* Tue Jun 28 2016 Orion Poplawski <orion@cora.nwra.com> - 4.4.0-4
|
||||
- Drop mpiexec hack
|
||||
|
||||
* Thu Feb 04 2016 Fedora Release Engineering <releng@fedoraproject.org> - 4.4.0-3
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
|
||||
|
||||
* Fri Jan 22 2016 Orion Poplawski <orion@cora.nwra.com> - 4.4.0-2
|
||||
- Rebuild ncx.c to fix arm build
|
||||
|
||||
* Thu Jan 21 2016 Orion Poplawski <orion@cora.nwra.com> - 4.4.0-1
|
||||
- Update to 4.4.0
|
||||
- Add patch to fix incorrect char definitions
|
||||
|
||||
* Sat Nov 07 2015 Rex Dieter <rdieter@fedoraproject.org> 4.3.3.1-7
|
||||
- rebuild (hdf)
|
||||
|
||||
* Wed Sep 16 2015 Orion Poplawski <orion@cora.nwra.com> - 4.3.3.1-6
|
||||
* Thu Dec 10 2015 Orion Poplawski <orion@cora.nwra.com> - 4.3.3.1-5
|
||||
- Rebuild for openmpi 1.10.0
|
||||
|
||||
* Mon Aug 10 2015 Sandro Mani <manisandro@gmail.com> - 4.3.3.1-5
|
||||
- Rebuild for RPM MPI Requires Provides Change
|
||||
|
||||
* Wed Jul 29 2015 Karsten Hopp <karsten@redhat.com> 4.3.3.1-4
|
||||
- mpich is available on ppc64 now
|
||||
|
||||
@ -459,30 +389,12 @@ done
|
||||
- Update to 4.3.1.1
|
||||
- Add BR m4
|
||||
|
||||
* Fri Dec 27 2013 Orion Poplawski <orion@cora.nwra.com> - 4.3.0-8
|
||||
- Rebuild for hdf5 1.8.12
|
||||
|
||||
* Thu Dec 5 2013 Orion Poplawski <orion@cora.nwra.com> - 4.3.0-7
|
||||
- Use BR hdf-static (bug #1038280)
|
||||
|
||||
* Mon Nov 4 2013 Orion Poplawski <orion@cora.nwra.com> - 4.3.0-6
|
||||
- Enable hdf4 support
|
||||
|
||||
* Sat Aug 03 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 4.3.0-5
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
|
||||
|
||||
* Sat Jul 20 2013 Deji Akingunola <dakingun@gmail.com> - 4.3.0-4
|
||||
- Rename mpich2 sub-packages to mpich and rebuild for mpich-3.0
|
||||
|
||||
* Thu Jul 11 2013 Orion Poplawski <orion@cora.nwra.com> - 4.3.0-3
|
||||
- Rebuild for openmpi 1.7.2
|
||||
|
||||
* Thu May 16 2013 Orion Poplawski <orion@cora.nwra.com> - 4.3.0-2
|
||||
- Rebuild for hdf5 1.8.11
|
||||
|
||||
* Mon May 13 2013 Orion Poplawski <orion@cora.nwra.com> - 4.3.0-1
|
||||
- Update to 4.3.0
|
||||
|
||||
* Thu Feb 14 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 4.2.1.1-4
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
|
||||
|
||||
|
||||
Loading…
Reference in New Issue
Block a user