- Add patch to fix namespace conflict with ncurses (bug #924467)

- Add BR on bison due to patching dap.y
This commit is contained in:
Orion Poplawski 2013-03-22 12:37:59 -06:00
parent df34d4b137
commit 54ed64e282
2 changed files with 432 additions and 2 deletions

421
netcdf-4.1.1-dap.patch Normal file
View File

@ -0,0 +1,421 @@
diff -up netcdf-4.1.1/libncdap3/oc/daplex.c.dap netcdf-4.1.1/libncdap3/oc/daplex.c
--- netcdf-4.1.1/libncdap3/oc/daplex.c.dap 2013-03-22 11:43:28.933640833 -0600
+++ netcdf-4.1.1/libncdap3/oc/daplex.c 2013-03-22 11:43:38.946596288 -0600
@@ -2,6 +2,7 @@
See the COPYRIGHT file for more information. */
#include "dapparselex.h"
+#include "daptab.h"
#define URLCVT
diff -up netcdf-4.1.1/libncdap3/oc/dapparse.c.dap netcdf-4.1.1/libncdap3/oc/dapparse.c
--- netcdf-4.1.1/libncdap3/oc/dapparse.c.dap 2010-04-01 17:33:24.000000000 -0600
+++ netcdf-4.1.1/libncdap3/oc/dapparse.c 2013-03-22 11:43:14.710704133 -0600
@@ -2,6 +2,7 @@
See the COPYRIGHT file for more information. */
#include "dapparselex.h"
+#include "daptab.h"
extern int dapparse(DAPparsestate*);
@@ -19,7 +20,7 @@ static int check_int32(char* val, long*
Object
-datasetbody(DAPparsestate* state, Object name, Object decls)
+dap_datasetbody(DAPparsestate* state, Object name, Object decls)
{
OCnode* node = newocnode((char*)name,OC_Dataset,state);
node->subnodes = (OClist*)decls;
@@ -32,7 +33,7 @@ datasetbody(DAPparsestate* state, Object
}
Object
-attributebody(DAPparsestate* state, Object attrlist)
+dap_attributebody(DAPparsestate* state, Object attrlist)
{
OCnode* node = newocnode(NULL,OC_Attributeset,state);
OCASSERT((state->root == NULL));
@@ -45,7 +46,7 @@ attributebody(DAPparsestate* state, Obje
}
Object
-errorbody(DAPparsestate* state, Object code, Object msg)
+dap_errorbody(DAPparsestate* state, Object code, Object msg)
{
state->svcerror = 1;
state->code = strdup((char*)code);
@@ -54,13 +55,13 @@ errorbody(DAPparsestate* state, Object c
}
Object
-unrecognizedresponse(DAPparsestate* state)
+dap_unrecognizedresponse(DAPparsestate* state)
{
- return errorbody(state,"0",state->lexstate->input);
+ return dap_errorbody(state,"0",state->lexstate->input);
}
Object
-declarations(DAPparsestate* state, Object decls, Object decl)
+dap_declarations(DAPparsestate* state, Object decls, Object decl)
{
OClist* alist = (OClist*)decls;
if(alist == NULL)
@@ -71,7 +72,7 @@ declarations(DAPparsestate* state, Objec
}
Object
-arraydecls(DAPparsestate* state, Object arraydecls, Object arraydecl)
+dap_arraydecls(DAPparsestate* state, Object arraydecls, Object arraydecl)
{
OClist* alist = (OClist*)arraydecls;
if(alist == NULL)
@@ -82,7 +83,7 @@ arraydecls(DAPparsestate* state, Object
}
Object
-arraydecl(DAPparsestate* state, Object name, Object size)
+dap_arraydecl(DAPparsestate* state, Object name, Object size)
{
long value;
OCnode* dim;
@@ -97,7 +98,7 @@ arraydecl(DAPparsestate* state, Object n
}
Object
-attrlist(DAPparsestate* state, Object attrlist, Object attrtuple)
+dap_attrlist(DAPparsestate* state, Object attrlist, Object attrtuple)
{
OClist* alist = (OClist*)attrlist;
if(alist == NULL)
@@ -117,7 +118,7 @@ attrlist(DAPparsestate* state, Object at
}
Object
-attrvalue(DAPparsestate* state, Object valuelist, Object value, Object etype)
+dap_attrvalue(DAPparsestate* state, Object valuelist, Object value, Object etype)
{
OClist* alist = (OClist*)valuelist;
if(alist == NULL) alist = oclistnew();
@@ -128,7 +129,7 @@ attrvalue(DAPparsestate* state, Object v
}
Object
-attribute(DAPparsestate* state, Object name, Object values, Object etype)
+dap_attribute(DAPparsestate* state, Object name, Object values, Object etype)
{
OCnode* att;
att = newocnode((char*)name,OC_Attribute,state);
@@ -138,7 +139,7 @@ attribute(DAPparsestate* state, Object n
}
Object
-attrset(DAPparsestate* state, Object name, Object attributes)
+dap_attrset(DAPparsestate* state, Object name, Object attributes)
{
OCnode* attset;
attset = newocnode((char*)name,OC_Attributeset,state);
@@ -199,7 +200,7 @@ dimnameanon(char* basename, unsigned int
}
Object
-makebase(DAPparsestate* state, Object name, Object etype, Object dimensions)
+dap_makebase(DAPparsestate* state, Object name, Object etype, Object dimensions)
{
OCnode* node;
node = newocnode((char*)name,OC_Primitive,state);
@@ -209,7 +210,7 @@ makebase(DAPparsestate* state, Object na
}
Object
-makestructure(DAPparsestate* state, Object name, Object dimensions, Object fields)
+dap_makestructure(DAPparsestate* state, Object name, Object dimensions, Object fields)
{
OCnode* node;
char* dupname;
@@ -225,7 +226,7 @@ makestructure(DAPparsestate* state, Obje
}
Object
-makesequence(DAPparsestate* state, Object name, Object members)
+dap_makesequence(DAPparsestate* state, Object name, Object members)
{
OCnode* node;
char* dupname;
@@ -240,7 +241,7 @@ makesequence(DAPparsestate* state, Objec
}
Object
-makegrid(DAPparsestate* state, Object name, Object arraydecl, Object mapdecls)
+dap_makegrid(DAPparsestate* state, Object name, Object arraydecl, Object mapdecls)
{
OCnode* node;
/* Check for duplicate map names */
diff -up netcdf-4.1.1/libncdap3/oc/dapparselex.h.dap netcdf-4.1.1/libncdap3/oc/dapparselex.h
--- netcdf-4.1.1/libncdap3/oc/dapparselex.h.dap 2010-04-01 17:33:24.000000000 -0600
+++ netcdf-4.1.1/libncdap3/oc/dapparselex.h 2013-03-22 11:40:43.271384078 -0600
@@ -6,12 +6,6 @@
#include "ocinternal.h"
#include "ocdebug.h"
-#ifdef USE_DAP
-/* To avoid "make distclean" wiping out dap.tab.h */
-#include "daptab.h"
-#else
-#include "dap.tab.h"
-#endif
#ifdef WIN32
#define strcasecmp stricmp
@@ -73,26 +67,32 @@ typedef struct DAPparsestate {
extern int yylex (YYSTYPE*, DAPparsestate*);
extern int yyerror(DAPparsestate*,char*);
+extern void dassetup(DAPparsestate* state);
extern void dap_parse_error(DAPparsestate*,const char *fmt, ...);
-
-extern Object datasetbody(DAPparsestate*,Object decls, Object name);
-extern Object declarations(DAPparsestate*,Object decls, Object decl);
-extern Object arraydecls(DAPparsestate*,Object arraydecls, Object arraydecl);
-extern Object arraydecl(DAPparsestate*,Object name, Object size);
-
-extern void attributesetup(DAPparsestate*);
-extern Object attributebody(DAPparsestate*,Object attrlist);
-extern Object attrlist(DAPparsestate*,Object attrlist, Object attrtuple);
-extern Object attribute(DAPparsestate*,Object name, Object value, Object etype);
-extern Object attrset(DAPparsestate*,Object name, Object attributes);
-extern Object attrvalue(DAPparsestate*,Object valuelist, Object value, Object etype);
-
-extern Object makebase(DAPparsestate*,Object name, Object etype, Object dimensions);
-extern Object makestructure(DAPparsestate*,Object name, Object dimensions, Object fields);
-extern Object makesequence(DAPparsestate*,Object name, Object members);
-extern Object makegrid(DAPparsestate*,Object name, Object arraydecl, Object mapdecls);
-
-extern Object errorbody(DAPparsestate*, Object code, Object msg);
-extern Object unrecognizedresponse(DAPparsestate*);
+extern Object dap_datasetbody(DAPparsestate*,Object decls, Object name);
+extern Object dap_declarations(DAPparsestate*,Object decls, Object decl);
+extern Object dap_arraydecls(DAPparsestate*,Object arraydecls, Object arraydecl);
+extern Object dap_arraydecl(DAPparsestate*,Object name, Object size);
+
+extern void dap_attributesetup(DAPparsestate*);
+extern Object dap_attributebody(DAPparsestate*,Object attrlist);
+extern Object dap_attrlist(DAPparsestate*,Object attrlist, Object attrtuple);
+extern Object dap_attribute(DAPparsestate*,Object name, Object value, Object etype);
+extern Object dap_attrset(DAPparsestate*,Object name, Object attributes);
+extern Object dap_attrvalue(DAPparsestate*,Object valuelist, Object value, Object etype);
+
+extern Object dap_makebase(DAPparsestate*,Object name, Object etype, Object dimensions);
+extern Object dap_makestructure(DAPparsestate*,Object name, Object dimensions, Object fields);
+extern Object dap_makesequence(DAPparsestate*,Object name, Object members);
+extern Object dap_makegrid(DAPparsestate*,Object name, Object arraydecl, Object mapdecls);
+
+extern Object dap_errorbody(DAPparsestate*, Object code, Object msg);
+extern Object dap_unrecognizedresponse(DAPparsestate*);
+
+/* Lexer entry points */
+extern int daplex(YYSTYPE*, DAPparsestate*);
+extern void daplexinit(char* input, Lexstate** lexstatep);
+extern void daplexcleanup(Lexstate** lexstatep);
+extern void dapsetwordchars(Lexstate* lexstate, int kind);
#endif /*DAPPARSELEX_H*/
diff -up netcdf-4.1.1/libncdap3/oc/dap.y.dap netcdf-4.1.1/libncdap3/oc/dap.y
--- netcdf-4.1.1/libncdap3/oc/dap.y.dap 2010-04-01 17:33:23.000000000 -0600
+++ netcdf-4.1.1/libncdap3/oc/dap.y 2013-03-22 11:34:25.689059778 -0600
@@ -1,12 +1,10 @@
/* Copyright 2009, UCAR/Unidata and OPeNDAP, Inc.
See the COPYRIGHT file for more information. */
-%{
-#include "dapparselex.h"
-%}
%pure-parser
%lex-param {DAPparsestate* parsestate}
%parse-param {DAPparsestate* parsestate}
+%{#include "dapparselex.h"%}
%token SCAN_ALIAS
%token SCAN_ARRAY
@@ -51,30 +49,30 @@ start:
| SCAN_ATTR dassetup attributebody
| SCAN_ERROR errorbody
| error
- {$$=unrecognizedresponse(parsestate);}
+ {$$=dap_unrecognizedresponse(parsestate);}
;
datasetbody:
'{' declarations '}' datasetname ';'
- {$$=datasetbody(parsestate,$4,$2);}
+ {$$=dap_datasetbody(parsestate,$4,$2);}
;
declarations:
- /* empty */ {$$=declarations(parsestate,null,null);}
- | declarations declaration {$$=declarations(parsestate,$1,$2);}
+ /* empty */ {$$=dap_declarations(parsestate,null,null);}
+ | declarations declaration {$$=dap_declarations(parsestate,$1,$2);}
;
/* 01/21/08: James says: no dimensions for grids or sequences */
/* 05/08/09: James says: no duplicate map names */
declaration:
base_type var_name array_decls ';'
- {$$=makebase(parsestate,$2,$1,$3);}
+ {$$=dap_makebase(parsestate,$2,$1,$3);}
| SCAN_STRUCTURE '{' declarations '}' var_name array_decls ';'
- {if(($$ = makestructure(parsestate,$5,$6,$3))==null) {YYABORT;}}
+ {if(($$ = dap_makestructure(parsestate,$5,$6,$3))==null) {YYABORT;}}
| SCAN_SEQUENCE '{' declarations '}' var_name ';'
- {if(($$ = makesequence(parsestate,$5,$3))==null) {YYABORT;}}
+ {if(($$ = dap_makesequence(parsestate,$5,$3))==null) {YYABORT;}}
| SCAN_GRID '{' SCAN_ARRAY ':' declaration SCAN_MAPS ':' declarations '}' var_name ';'
- {if(($$ = makegrid(parsestate,$10,$5,$8))==null) {YYABORT;}}
+ {if(($$ = dap_makegrid(parsestate,$10,$5,$8))==null) {YYABORT;}}
| error
{yyerror(parsestate,"Unrecognized type"); YYABORT;}
;
@@ -93,13 +91,13 @@ base_type:
;
array_decls:
- /* empty */ {$$=arraydecls(parsestate,null,null);}
- | array_decls array_decl {$$=arraydecls(parsestate,$1,$2);}
+ /* empty */ {$$=dap_arraydecls(parsestate,null,null);}
+ | array_decls array_decl {$$=dap_arraydecls(parsestate,$1,$2);}
;
array_decl:
- '[' SCAN_WORD ']' {$$=arraydecl(parsestate,null,$2);}
- | '[' name '=' SCAN_WORD ']' {$$=arraydecl(parsestate,$2,$4);}
+ '[' SCAN_WORD ']' {$$=dap_arraydecl(parsestate,null,$2);}
+ | '[' name '=' SCAN_WORD ']' {$$=dap_arraydecl(parsestate,$2,$4);}
| error
{yyerror(parsestate,"Illegal dimension declaration"); YYABORT;}
;
@@ -115,81 +113,81 @@ var_name: name {$$=$1;};
dassetup: {dassetup(parsestate);}
attributebody:
- '{' attr_list '}' {$$=attributebody(parsestate,$2);}
+ '{' attr_list '}' {$$=dap_attributebody(parsestate,$2);}
| error
{yyerror(parsestate,"Illegal DAS body"); YYABORT;}
;
attr_list:
- /* empty */ {$$=attrlist(parsestate,null,null);}
- | attr_list attribute {$$=attrlist(parsestate,$1,$2);}
+ /* empty */ {$$=dap_attrlist(parsestate,null,null);}
+ | attr_list attribute {$$=dap_attrlist(parsestate,$1,$2);}
;
attribute:
alias ';' {$$=null;} /* ignored */
| SCAN_BYTE name bytes ';'
- {$$=attribute(parsestate,$2,$3,(Object)SCAN_BYTE);}
+ {$$=dap_attribute(parsestate,$2,$3,(Object)SCAN_BYTE);}
| SCAN_INT16 name int16 ';'
- {$$=attribute(parsestate,$2,$3,(Object)SCAN_INT16);}
+ {$$=dap_attribute(parsestate,$2,$3,(Object)SCAN_INT16);}
| SCAN_UINT16 name uint16 ';'
- {$$=attribute(parsestate,$2,$3,(Object)SCAN_UINT16);}
+ {$$=dap_attribute(parsestate,$2,$3,(Object)SCAN_UINT16);}
| SCAN_INT32 name int32 ';'
- {$$=attribute(parsestate,$2,$3,(Object)SCAN_INT32);}
+ {$$=dap_attribute(parsestate,$2,$3,(Object)SCAN_INT32);}
| SCAN_UINT32 name uint32 ';'
- {$$=attribute(parsestate,$2,$3,(Object)SCAN_UINT32);}
+ {$$=dap_attribute(parsestate,$2,$3,(Object)SCAN_UINT32);}
| SCAN_FLOAT32 name float32 ';'
- {$$=attribute(parsestate,$2,$3,(Object)SCAN_FLOAT32);}
+ {$$=dap_attribute(parsestate,$2,$3,(Object)SCAN_FLOAT32);}
| SCAN_FLOAT64 name float64 ';'
- {$$=attribute(parsestate,$2,$3,(Object)SCAN_FLOAT64);}
+ {$$=dap_attribute(parsestate,$2,$3,(Object)SCAN_FLOAT64);}
| SCAN_STRING name strs ';'
- {$$=attribute(parsestate,$2,$3,(Object)SCAN_STRING);}
+ {$$=dap_attribute(parsestate,$2,$3,(Object)SCAN_STRING);}
| SCAN_URL name urls ';'
- {$$=attribute(parsestate,$2,$3,(Object)SCAN_URL);}
- | name '{' attr_list '}' {$$=attrset(parsestate,$1,$3);}
+ {$$=dap_attribute(parsestate,$2,$3,(Object)SCAN_URL);}
+ | name '{' attr_list '}' {$$=dap_attrset(parsestate,$1,$3);}
| error
{yyerror(parsestate,"Illegal attribute"); YYABORT;}
;
bytes:
- SCAN_WORD {$$=attrvalue(parsestate,null,$1,(Object)SCAN_BYTE);}
+ SCAN_WORD {$$=dap_attrvalue(parsestate,null,$1,(Object)SCAN_BYTE);}
| bytes ',' SCAN_WORD
- {$$=attrvalue(parsestate,$1,$3,(Object)SCAN_BYTE);}
+ {$$=dap_attrvalue(parsestate,$1,$3,(Object)SCAN_BYTE);}
;
int16:
- SCAN_WORD {$$=attrvalue(parsestate,null,$1,(Object)SCAN_INT16);}
+ SCAN_WORD {$$=dap_attrvalue(parsestate,null,$1,(Object)SCAN_INT16);}
| int16 ',' SCAN_WORD
- {$$=attrvalue(parsestate,$1,$3,(Object)SCAN_INT16);}
+ {$$=dap_attrvalue(parsestate,$1,$3,(Object)SCAN_INT16);}
;
uint16:
- SCAN_WORD {$$=attrvalue(parsestate,null,$1,(Object)SCAN_UINT16);}
+ SCAN_WORD {$$=dap_attrvalue(parsestate,null,$1,(Object)SCAN_UINT16);}
| uint16 ',' SCAN_WORD
- {$$=attrvalue(parsestate,$1,$3,(Object)SCAN_UINT16);}
+ {$$=dap_attrvalue(parsestate,$1,$3,(Object)SCAN_UINT16);}
;
int32:
- SCAN_WORD {$$=attrvalue(parsestate,null,$1,(Object)SCAN_INT32);}
+ SCAN_WORD {$$=dap_attrvalue(parsestate,null,$1,(Object)SCAN_INT32);}
| int32 ',' SCAN_WORD
- {$$=attrvalue(parsestate,$1,$3,(Object)SCAN_INT32);}
+ {$$=dap_attrvalue(parsestate,$1,$3,(Object)SCAN_INT32);}
;
uint32:
- SCAN_WORD {$$=attrvalue(parsestate,null,$1,(Object)SCAN_UINT32);}
- | uint32 ',' SCAN_WORD {$$=attrvalue(parsestate,$1,$3,(Object)SCAN_UINT32);}
+ SCAN_WORD {$$=dap_attrvalue(parsestate,null,$1,(Object)SCAN_UINT32);}
+ | uint32 ',' SCAN_WORD {$$=dap_attrvalue(parsestate,$1,$3,(Object)SCAN_UINT32);}
;
float32:
- SCAN_WORD {$$=attrvalue(parsestate,null,$1,(Object)SCAN_FLOAT32);}
- | float32 ',' SCAN_WORD {$$=attrvalue(parsestate,$1,$3,(Object)SCAN_FLOAT32);}
+ SCAN_WORD {$$=dap_attrvalue(parsestate,null,$1,(Object)SCAN_FLOAT32);}
+ | float32 ',' SCAN_WORD {$$=dap_attrvalue(parsestate,$1,$3,(Object)SCAN_FLOAT32);}
;
float64:
- SCAN_WORD {$$=attrvalue(parsestate,null,$1,(Object)SCAN_FLOAT64);}
- | float64 ',' SCAN_WORD {$$=attrvalue(parsestate,$1,$3,(Object)SCAN_FLOAT64);}
+ SCAN_WORD {$$=dap_attrvalue(parsestate,null,$1,(Object)SCAN_FLOAT64);}
+ | float64 ',' SCAN_WORD {$$=dap_attrvalue(parsestate,$1,$3,(Object)SCAN_FLOAT64);}
;
strs:
- str_or_id {$$=attrvalue(parsestate,null,$1,(Object)SCAN_STRING);}
- | strs ',' str_or_id {$$=attrvalue(parsestate,$1,$3,(Object)SCAN_STRING);}
+ str_or_id {$$=dap_attrvalue(parsestate,null,$1,(Object)SCAN_STRING);}
+ | strs ',' str_or_id {$$=dap_attrvalue(parsestate,$1,$3,(Object)SCAN_STRING);}
;
urls:
- url {$$=attrvalue(parsestate,null,$1,(Object)SCAN_URL);}
- | urls ',' url {$$=attrvalue(parsestate,$1,$3,(Object)SCAN_URL);}
+ url {$$=dap_attrvalue(parsestate,null,$1,(Object)SCAN_URL);}
+ | urls ',' url {$$=dap_attrvalue(parsestate,$1,$3,(Object)SCAN_URL);}
;
url:
@@ -239,7 +237,7 @@ name:
errorbody:
'{' SCAN_CODE '=' SCAN_WORD ';' SCAN_MESSAGE '=' SCAN_WORD ';' '}' ';'
- {$$=errorbody(parsestate,$4,$8);}
+ {$$=dap_errorbody(parsestate,$4,$8);}
;

View File

@ -1,19 +1,23 @@
Name: netcdf
Version: 4.1.1
Release: 3%{?dist}.2
Release: 3%{?dist}.3
Summary: Libraries for the Unidata network Common Data Form
Group: Applications/Engineering
License: NetCDF
URL: http://www.unidata.ucar.edu/software/netcdf/
Source0: http://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-4.1.1.tar.gz
Source0: http://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-%{version}.tar.gz
#Use pkgconfig in nc-config to avoid multi-lib issues
Patch0: netcdf-4.1-beta2-pkgconfig.patch
Patch1: netcdf-4.1.1-fflags.patch
#Explicitly link libnetcdf.so agains -lhdf5_hl -lhdf5, reported upstream
Patch2: netcdf-4.1.1-hdf5.patch
# Fix namespace conflict with ncurses (bug #924467)
Patch3: netcdf-4.1.1-dap.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
# bison is required because we patch dap.y in the dap patch
BuildRequires: bison
BuildRequires: gcc-gfortran, gawk
BuildRequires: hdf5-devel >= 1.8.4
BuildRequires: libcurl-devel
@ -83,6 +87,7 @@ This package contains the netCDF static libs.
%patch0 -p1 -b .pkgconfig
%patch1 -p1 -b .fflags
%patch2 -p1 -b .hdf5
%patch3 -p1 -b .dap
%build
@ -167,6 +172,10 @@ fi
%changelog
* Fri Mar 22 2013 Orion Poplawski <orion@cora.nwra.com> - 4.1.1-3.3
- Add patch to fix namespace conflict with ncurses (bug #924467)
- Add BR on bison due to patching dap.y
* Mon Dec 27 2010 Orion Poplawski <orion@cora.nwra.com> - 4.1.1-3.2
- Don't use %%{_isa} in Requires for gcc-gfortran - not multilib in RHEL