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Version 2.7.2.

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This commit is contained in:
Jerry James 2021-09-02 14:09:07 -06:00
parent 4776d54ba4
commit 3d854bd1f0
4 changed files with 38 additions and 35 deletions
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8
nauty-autotoolization.patch
View File

@ -30,7 +30,7 @@ Last-Update: 2017-11-24
# ======================================================================
# First we define some functions
@@ -124,30 +141,37 @@
@@ -119,30 +136,37 @@
is_cygwin=0 ;;
esac
@ -85,9 +85,9 @@ Last-Update: 2017-11-24
case "$CC" in
gcc*)
@@ -448,5 +472,26 @@
edit_msg="++++++ This file is automatically generated, don't edit it by hand! ++++++"
AC_SUBST(edit_msg)
@@ -461,5 +485,26 @@
AC_PROG_MKDIR_P
AC_PROG_INSTALL
-AC_OUTPUT(makefile:makefile.in nauty.h:nauty-h.in
- naututil.h:naututil-h.in gtools.h:gtools-h.in)

52
nauty-popcnt.patch
View File

@ -1,7 +1,7 @@
Description: enable runtime detection of popcnt-enabled CPU
Origin: fedora
Author: Jerry James <loganjerry@gmail.com>
Last-Update: 2020-05-21
Last-Update: 2021-09-02
--- a/addedgeg.c
+++ b/addedgeg.c
@ -91,7 +91,7 @@ Last-Update: 2020-05-21
{
--- a/configure.ac
+++ b/configure.ac
@@ -83,6 +83,9 @@
@@ -79,6 +79,9 @@ AC_ARG_ENABLE([popcnt],
AS_HELP_STRING([--disable-popcnt], [Disable popcnt extensions]),
[enablearg=given], [enablearg=notgiven])
AS_IF([test $enablearg = notgiven || test "x$enable_popcnt" = xyes],[allow_popcnt=1],[allow_popcnt=0])
@ -101,7 +101,7 @@ Last-Update: 2020-05-21
dnl --disable-clz disallows clz instructions, otherwise they are tested for
AC_ARG_ENABLE([clz],
@@ -317,7 +320,7 @@
@@ -319,7 +322,7 @@ have_popcntll=0
have_mmpop32=0
have_mmpop64=0
@ -110,7 +110,7 @@ Last-Update: 2020-05-21
[AS_IF([test "$CC" = "icc"],
[AC_MSG_CHECKING(if _mm_popcnt_u32() is supported)
AC_LINK_IFELSE([AC_LANG_SOURCE([#include <nmmintrin.h>
@@ -351,6 +354,7 @@
@@ -353,6 +356,7 @@ AC_SUBST(have_popcntl)
AC_SUBST(have_popcntll)
AC_SUBST(have_mmpop32)
AC_SUBST(have_mmpop64)
@ -949,7 +949,7 @@ Last-Update: 2020-05-21
/**************************************************************************/
--- a/genquarticg.c
+++ b/genquarticg.c
@@ -227,9 +227,9 @@ isbiconnected(graph *g, int n)
@@ -226,9 +226,9 @@ isbiconnected(graph *g, int n)
* of the graph reaches nmax after which it is written to outputfile *
****************************************************************************/
@ -962,7 +962,7 @@ Last-Update: 2020-05-21
{
int vm1, vm2, vm3, vm4, vt1, vt2, vt3, vt4, c, b, mcol1,
tcol, got_one, i, j, numpair1, numdovi, maxdovi, i1, j1, i2, j2,
@@ -913,7 +913,7 @@ extend(int n, graph *g, edgestruct *edge
@@ -906,7 +906,7 @@ extend(int n, graph *g, edgestruct *edge
} //end for c..
@ -971,7 +971,7 @@ Last-Update: 2020-05-21
/*****************************************************************************
* *
@@ -1157,9 +1157,9 @@ init_refinex( int *clr, int *lb, int *p,
@@ -1150,9 +1150,9 @@ init_refinex( int *clr, int *lb, int *p,
* code := -1 for n-1 not max, 0 for maybe, 1 for definite *
* *
*****************************************************************************/
@ -984,7 +984,7 @@ Last-Update: 2020-05-21
{
int i, c1, c2, labc1, split1, split2, cell1, cell2, cnt, bmin, bmax;
int workperm[MAXN], bucket[MAXN+2];
@@ -1287,7 +1287,7 @@ refinex(graph *g, int *lab, int *ptn, in
@@ -1280,7 +1280,7 @@ refinex(graph *g, int *lab, int *ptn, in
}
}
}
@ -995,7 +995,7 @@ Last-Update: 2020-05-21
/*****************************************************************************/
--- a/gentourng.c
+++ b/gentourng.c
@@ -547,9 +547,9 @@ userautomproc(int count, int *p, int *or
@@ -549,9 +549,9 @@ userautomproc(int count, int *p, int *or
* *
*****************************************************************************/
@ -1008,7 +1008,7 @@ Last-Update: 2020-05-21
{
int i,c1,c2,labc1;
setword x,lact;
@@ -681,7 +681,7 @@ refinex(graph *g, int *lab, int *ptn, in
@@ -683,7 +683,7 @@ refinex(graph *g, int *lab, int *ptn, in
}
}
}
@ -1017,7 +1017,7 @@ Last-Update: 2020-05-21
/**************************************************************************/
@@ -803,8 +803,7 @@ accept1(graph *g, int n, xword x, graph
@@ -805,8 +805,7 @@ accept1(graph *g, int n, xword x, graph
/**************************************************************************/
@ -1027,7 +1027,7 @@ Last-Update: 2020-05-21
/* make hitting invariant
* return FALSE if n-1 not maximal else return TRUE */
{
@@ -827,12 +826,26 @@ hitinvar(graph *g, int *invar, int n)
@@ -829,12 +828,26 @@ hitinvar(graph *g, int *invar, int n)
if (v < n-1 && inv > invar[n-1]) return FALSE;
}
return TRUE;
@ -1057,8 +1057,8 @@ Last-Update: 2020-05-21
/* decide if n in theta(g+x) -- version for n+1 == maxn */
{
int i;
@@ -849,10 +862,8 @@ accept2(graph *g, int n, xword x, graph
setword workspace[50];
@@ -851,10 +864,8 @@ accept2(graph *g, int n, xword x, graph
setword workspace[200];
boolean cheapacc;
-#ifdef INSTRUMENT
@ -1070,7 +1070,7 @@ Last-Update: 2020-05-21
nx = n + 1;
gxn = 0;
@@ -873,15 +884,11 @@ accept2(graph *g, int n, xword x, graph
@@ -875,15 +886,11 @@ accept2(graph *g, int n, xword x, graph
gx[n] = gxn;
degx[n] = degn = XPOPCOUNT(x);
@ -1088,7 +1088,7 @@ Last-Update: 2020-05-21
if (canonise) makecanon(gx,gcan,nx);
return TRUE;
}
@@ -920,9 +927,7 @@ accept2(graph *g, int n, xword x, graph
@@ -922,9 +929,7 @@ accept2(graph *g, int n, xword x, graph
{
if (j0 == n)
{
@ -1099,7 +1099,7 @@ Last-Update: 2020-05-21
if (canonise) makecanon(gx,gcan,nx);
return TRUE;
}
@@ -965,9 +970,7 @@ accept2(graph *g, int n, xword x, graph
@@ -967,9 +972,7 @@ accept2(graph *g, int n, xword x, graph
{
if (j0 == n)
{
@ -1110,7 +1110,7 @@ Last-Update: 2020-05-21
if (canonise) makecanon(gx,gcan,nx);
return TRUE;
}
@@ -986,9 +989,7 @@ accept2(graph *g, int n, xword x, graph
@@ -988,9 +991,7 @@ accept2(graph *g, int n, xword x, graph
if (cheapacc)
{
@ -1121,7 +1121,7 @@ Last-Update: 2020-05-21
if (canonise) makecanon(gx,gcan,nx);
return TRUE;
}
@@ -998,22 +999,18 @@ accept2(graph *g, int n, xword x, graph
@@ -1000,22 +1001,18 @@ accept2(graph *g, int n, xword x, graph
options.defaultptn = FALSE;
active[0] = 0;
@ -1129,7 +1129,7 @@ Last-Update: 2020-05-21
- ++a2nauty;
-#endif
+ INSTRUMENT_VAR(a2nauty);
nauty(gx,lab,ptn,active,orbits,&options,&stats,workspace,50,1,nx,gcan);
nauty(gx,lab,ptn,active,orbits,&options,&stats,workspace,200,1,nx,gcan);
if (orbits[lab[n]] == orbits[n])
{
@ -1334,7 +1334,7 @@ Last-Update: 2020-05-21
-long
-numtriangles1(graph *g, int n)
+POPCNTFUNC(long,numtriangles1,(graph *g, int n),
/* The number of triangles in g */
/* The number of triangles in g; undirected only */
{
int i,j;
@@ -176,12 +173,11 @@ numtriangles1(graph *g, int n)
@ -1349,7 +1349,7 @@ Last-Update: 2020-05-21
-long
-numtriangles(graph *g, int m, int n)
+POPCNTFUNC(long,numtriangles,(graph *g, int m, int n),
/* The number of triangles in g */
/* The number of triangles in g; undirected only */
{
int i,j,k,kw;
@@ -206,7 +202,7 @@ numtriangles(graph *g, int m, int n)
@ -2022,7 +2022,7 @@ Last-Update: 2020-05-21
* *
--- a/nauty-h.in
+++ b/nauty-h.in
@@ -68,6 +68,7 @@ it is necessary to check they are correc
@@ -88,6 +88,7 @@ it is necessary to check they are correc
#define HAVE_POPCNTLL @have_popcntll@
#define HAVE_MMPOP32 @have_mmpop32@
#define HAVE_MMPOP64 @have_mmpop64@
@ -2030,7 +2030,7 @@ Last-Update: 2020-05-21
/*==================================================================*/
@@ -804,6 +805,46 @@ typedef unsigned long nauty_counter;
@@ -827,6 +828,46 @@ typedef unsigned long nauty_counter;
#ifndef FIRSTBITNZ /* Can be defined outside */
@ -2077,7 +2077,7 @@ Last-Update: 2020-05-21
#ifdef NAUTY_IN_MAGMA
#define FIRSTBITNZ(x) bs_firstbit(x)
@@ -915,7 +956,7 @@ static int msc_bsr_16(setword x) \
@@ -938,7 +979,7 @@ static int msc_bsr_16(setword x) \
/* Note that, unlike icc, gcc will not use the POPCNT instruction
without permission, in which case it defines __POPCNT__ . */
@ -2086,7 +2086,7 @@ Last-Update: 2020-05-21
#if defined(SETWORD_LONGLONG) && HAVE_POPCNTLL
#define POPCOUNT(x) __builtin_popcountll(x)
#elif defined(SETWORD_LONG) && HAVE_POPCNTL
@@ -1176,6 +1217,18 @@ extern void free(void*);
@@ -1199,6 +1240,18 @@ extern void free(void*);
#define CONDYNFREE(name,name_sz,minsz) \
if (name_sz > (size_t)(minsz)) {DYNFREE(name,name_sz);}

11
nauty.spec
View File

@ -1,14 +1,14 @@
%global nautybasever 2.7r1
%global nautybasever 2.7r2
%global nautytarver %(tr -d . <<< %{nautybasever})
Name: nauty
Version: %(tr r . <<< %{nautybasever})
Release: 5%{?dist}
Release: 1%{?dist}
Summary: Graph canonical labeling and automorphism group computation
License: ASL 2.0
URL: http://pallini.di.uniroma1.it/
Source0: http://pallini.di.uniroma1.it/%{name}%{nautytarver}.tar.gz
URL: https://pallini.di.uniroma1.it/
Source0: https://pallini.di.uniroma1.it/%{name}%{nautytarver}.tar.gz
# Debian patch to fix the gt_numorbits declaration
Patch0: %{name}-fix-gt_numorbits.patch
@ -128,6 +128,9 @@ LD_LIBRARY_PATH=$PWD/.libs make check
%{_libdir}/pkgconfig/%{name}.pc
%changelog
* Thu Sep 2 2021 Jerry James <loganjerry@gmail.com> - 2.7.2-1
- Version 2.7.2
* Thu Jul 22 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.7.1-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild

2
sources
View File

@ -1 +1 @@
SHA512 (nauty27r1.tar.gz) = f3a228b2967553f0096f9f70eaa1c25b0a929c315b4a6c6948903d197aa6431b7068ca19b1f7902c41597e1abfa81fb709fc7c4a8d193a187491239df8507b33
SHA512 (nauty27r2.tar.gz) = 07b6e2648faf87e5978d18ce30925b4a3cd3a384df542f987cfb6600cb74eb4960286b5559d971a3f5814d9360b200901babfd6e27faed47079402c4efe0759e