diff -ur mmseq_0.9.9/bam2hits.cpp mmseq_0.9.9.new/bam2hits.cpp
--- mmseq_0.9.9/bam2hits.cpp	2011-03-18 00:27:28.000000000 +0000
+++ mmseq_0.9.9.new/bam2hits.cpp	2011-04-04 17:45:39.732106154 +0100
@@ -1,4 +1,4 @@
-#include "sam.h"
+#include <samtools/sam.h>
 #include <iostream>
 #include <fstream>
 #include <string>