--- mmseq_0.9.14/Makefile	2011-09-20 11:27:55.000000000 +0100
+++ mmseq_0.9.14.new/Makefile	2011-10-07 16:13:01.261226334 +0100
@@ -35,7 +35,7 @@
 	$(CXX) $(CXXFLAGS) -c sokal.cc
 
 fasta.o : fasta.c fasta.h
-	$(CC) -c fasta.c
+	$(CC) $(CXXFLAGS) -c fasta.c
 
 bam2hits : fasta.o bam2hits.cpp
 	${CXX} ${MACROS} $(CXXFLAGS) -fopenmp -O3 fasta.o bam2hits.cpp -o bam2hits ${LIBS_B2H}