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mmseq.spec
16
mmseq.spec
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Name: mmseq
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Name: mmseq
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Version: 1.0.11
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Version: 1.0.11
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Release: 4%{?dist}
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Release: 5%{?dist}
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Summary: Haplotype and isoform specific expression estimation for RNA-seq
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Summary: Haplotype and isoform specific expression estimation for RNA-seq
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%if 0%{?fedora} >= 33
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%bcond_without flexiblas
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%endif
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License: GPLv2+
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License: GPLv2+
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URL: https://github.com/eturro/%{name}
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URL: https://github.com/eturro/%{name}
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Source0: https://github.com/eturro/%{name}/archive/%{version}.zip
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Source0: https://github.com/eturro/%{name}/archive/%{version}.zip
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@ -16,6 +20,9 @@ BuildRequires: htslib-devel
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BuildRequires: gsl-devel
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BuildRequires: gsl-devel
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BuildRequires: zlib-devel
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BuildRequires: zlib-devel
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BuildRequires: armadillo-devel
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BuildRequires: armadillo-devel
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%if %{with flexiblas}
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BuildRequires: flexiblas-devel
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%endif
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Requires: ruby
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Requires: ruby
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Requires: samtools
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Requires: samtools
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@ -36,6 +43,10 @@ estimation using multi-mapping RNA-seq reads. Example scripts are included.
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# Only 2 bin/*-linux files are included in Source0 archive.
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# Only 2 bin/*-linux files are included in Source0 archive.
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rm -f bin/*-linux
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rm -f bin/*-linux
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%if %{with flexiblas}
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sed -e 's/-lblas/-lflexiblas/g' -e 's/-llapack/-lflexiblas/g' -i src/Makefile
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%endif
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%build
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%build
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cd src
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cd src
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make %{?_smp_mflags} CXXFLAGS="%{optflags}"
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make %{?_smp_mflags} CXXFLAGS="%{optflags}"
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@ -82,6 +93,9 @@ install -p -m 0755 bin/ensembl_gtf_to_gff.pl %{buildroot}%{_bindir}
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%changelog
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%changelog
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* Thu Aug 27 2020 Iñaki Úcar <iucar@fedoraproject.org> - 1.0.11-5
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- https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
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* Tue Jul 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.11-4
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* Tue Jul 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.11-4
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
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