From c6f5947946c579f045d965e8e5693a7cee930b27 Mon Sep 17 00:00:00 2001 From: "bloch@verdurin.com" Date: Sun, 1 Mar 2015 22:36:02 +0000 Subject: [PATCH] Rework compilation flags patch --- mmseq-flags.patch | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/mmseq-flags.patch b/mmseq-flags.patch index 6a8593d..6f0cf54 100644 --- a/mmseq-flags.patch +++ b/mmseq-flags.patch @@ -1,11 +1,11 @@ ---- mmseq_0.9.14/src/Makefile 2011-09-20 11:27:55.000000000 +0100 -+++ mmseq_0.9.14.new/src/Makefile 2011-10-07 16:13:01.261226334 +0100 -@@ -35,7 +35,7 @@ - $(CXX) $(CXXFLAGS) -c sokal.cc +diff -ur mmseq-1.0.8a/src/Makefile mmseq-1.0.8a-new/src/Makefile +--- mmseq-1.0.8a/src/Makefile 2014-01-09 22:45:54.000000000 +0000 ++++ mmseq-1.0.8a-new/src/Makefile 2015-03-01 22:35:22.349761703 +0000 +@@ -75,6 +75,7 @@ + $(CXX) ${OPT} -c sokal.cc fasta.o : fasta.c fasta.h -- $(CC) -c fasta.c -+ $(CC) $(CXXFLAGS) -c fasta.c ++ $(CC) $(CXXFLAGS) -c fasta.c - bam2hits : fasta.o bam2hits.cpp - ${CXX} ${MACROS} $(CXXFLAGS) -fopenmp -O3 fasta.o bam2hits.cpp -o bam2hits ${LIBS_B2H} + uh.o : uh.cpp uh.hh + $(CXX) ${OMP} ${OPT} -c uh.cpp