From 8c347c07315b653c9f2452ea27d2c98ce09493c2 Mon Sep 17 00:00:00 2001 From: "bloch@verdurin.com" Date: Sun, 1 Mar 2015 22:46:23 +0000 Subject: [PATCH] Rework zlib patch --- mmseq-zlib.patch | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/mmseq-zlib.patch b/mmseq-zlib.patch index 27a3656..174d9f3 100644 --- a/mmseq-zlib.patch +++ b/mmseq-zlib.patch @@ -1,11 +1,11 @@ ---- mmseq_0.9.18/Makefile 2011-12-16 14:44:46.000000000 +0000 -+++ mmseq_0.9.18.new/Makefile 2012-01-11 15:03:03.091319510 +0000 +--- mmseq_0.9.18/src/Makefile 2011-12-16 14:44:46.000000000 +0000 ++++ mmseq_0.9.18.new/src/Makefile 2012-01-11 15:03:03.091319510 +0000 @@ -11,7 +11,7 @@ + CC = gcc CXX = g++ - LIBS = -lgsl -lgslcblas --LIBS_B2H = -lboost_regex -lbam -lz -+LIBS_B2H = -lboost_regex -lbam -Wl,--as-needed -lz +-LIBS = -lgsl -lgslcblas -lboost_regex -lbam -lboost_iostreams -lz -llapack -lblas -lgfortran ++LIBS = -lgsl -lgslcblas -lboost_regex -lbam -lboost_iostreams -llapack -lblas -lgfortran -Wl,--as-needed -lz OMP = -fopenmp OPT = -O3 - + OPTSAFE = -O2