28 lines
916 B
Diff
28 lines
916 B
Diff
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diff -ur mmseq_0.9.9/Makefile mmseq_0.9.9.new/Makefile
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--- mmseq_0.9.9/Makefile 2011-03-18 00:25:53.000000000 +0000
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+++ mmseq_0.9.9.new/Makefile 2011-04-09 16:46:16.445406767 +0100
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@@ -26,19 +26,19 @@
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.PHONY : all
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mmseq : sokal.o mmseq.cpp
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- $(CXX) ${MACROS} -fopenmp -O3 sokal.o mmseq.cpp -o mmseq ${LIBS}
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+ $(CXX) ${MACROS} $(CXXFLAGS) -fopenmp sokal.o mmseq.cpp -o mmseq ${LIBS}
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static: sokal.o mmseq.cpp
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$(CXX) ${MACROS} ${STATICFLAG} -fopenmp -O3 sokal.o mmseq.cpp -o ${STATICBIN} ${STATICLIBS}
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sokal.o : sokal.cc sokal.hh
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- $(CXX) -c sokal.cc
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+ $(CXX) $(CXXFLAGS) -c sokal.cc
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fasta.o : fasta.c fasta.h
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- $(CC) -c fasta.c
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+ $(CC) $(CXXFLAGS) -c fasta.c
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bam2hits : fasta.o bam2hits.cpp
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- ${CXX} ${MACROS} -fopenmp -O3 fasta.o bam2hits.cpp -o bam2hits ${LIBS_B2H}
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+ ${CXX} ${MACROS} $(CXXFLAGS) -fopenmp fasta.o bam2hits.cpp -o bam2hits ${LIBS_B2H}
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hpc : mmseq_hpc bam2hits_hpc
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.PHONY : all
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