Update to 4.2.14

Build shared libraries
Enable java

hdf-build.patch

@@ -0,0 +1,52 @@
+diff -up hdf-4.2.14/java/examples/Makefile.am.build hdf-4.2.14/java/examples/Makefile.am
+--- hdf-4.2.14/java/examples/Makefile.am.build	2018-06-26 22:42:58.000000000 -0600
++++ hdf-4.2.14/java/examples/Makefile.am	2019-04-09 20:51:31.031211605 -0600
+@@ -12,8 +12,8 @@ classes:
+ 	test -d $(@D)/$(JAVAROOT) || $(MKDIR_P) $(@D)/$(JAVAROOT)
+ 
+ pkgpath = examples
+-hdfjarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar
+-jarfile = jar$(PACKAGE_TARNAME)examples.jar
++hdfjarfile = $(PACKAGE_TARNAME).jar
++jarfile = $(PACKAGE_TARNAME)examples.jar
+ 
+ CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/slf4j-api-1.7.5.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.5.jar:$$CLASSPATH
+ AM_JAVACFLAGS = $(H4_JAVACFLAGS) -deprecation
+diff -up hdf-4.2.14/java/src/Makefile.am.build hdf-4.2.14/java/src/Makefile.am
+--- hdf-4.2.14/java/src/Makefile.am.build	2018-06-26 22:42:58.000000000 -0600
++++ hdf-4.2.14/java/src/Makefile.am	2019-04-09 21:20:56.625579495 -0600
+@@ -13,8 +13,8 @@ JAVAROOT = .classes
+ classes:
+ 	test -d $(@D)/$(JAVAROOT) || $(MKDIR_P) $(@D)/$(JAVAROOT)
+ 
+-jarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar
+-hdf_javadir = $(libdir)
++jarfile = $(PACKAGE_TARNAME).jar
++hdf_javadir = $(prefix)/lib/java
+ 
+ pkgpath = hdf/hdflib
+ CLASSPATH_ENV=CLASSPATH=.:$(top_srcdir)/java/lib/slf4j-api-1.7.5.jar:$$CLASSPATH
+diff -up hdf-4.2.14/java/test/junit.sh.in.build hdf-4.2.14/java/test/junit.sh.in
+--- hdf-4.2.14/java/test/junit.sh.in.build	2018-06-26 22:42:58.000000000 -0600
++++ hdf-4.2.14/java/test/junit.sh.in	2019-04-09 20:51:31.032211610 -0600
+@@ -40,7 +40,7 @@ HDFLIB_HOME="$top_srcdir/java/lib"
+ BLDLIBDIR="$top_builddir/java/lib"
+ BLDDIR="."
+ HDFTEST_HOME="$top_srcdir/java/test"
+-JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar
++JARFILE=@PACKAGE_TARNAME@.jar
+ TESTJARFILE=jar@PACKAGE_TARNAME@test.jar
+ test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR
+ 
+diff -up hdf-4.2.14/java/test/Makefile.am.build hdf-4.2.14/java/test/Makefile.am
+--- hdf-4.2.14/java/test/Makefile.am.build	2018-06-26 22:42:58.000000000 -0600
++++ hdf-4.2.14/java/test/Makefile.am	2019-04-09 20:51:31.033211614 -0600
+@@ -12,7 +12,7 @@ classes:
+ 	test -d $(@D)/$(JAVAROOT) || $(MKDIR_P) $(@D)/$(JAVAROOT)
+ 
+ pkgpath = test
+-hdfjarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar
++hdfjarfile = $(PACKAGE_TARNAME).jar
+ CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/junit.jar:$(top_srcdir)/java/lib/hamcrest-core.jar:$(top_srcdir)/java/lib/slf4j-api-1.7.5.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.5.jar:$$CLASSPATH
+ 
+ jarfile = jar$(PACKAGE_TARNAME)test.jar

hdf.spec

@@ -4,7 +4,7 @@
 
 Name: hdf
 Version: 4.2.14
-Release: 2%{?dist}
+Release: 3%{?dist}
 Summary: A general purpose library and file format for storing scientific data
 License: BSD
 URL: https://portal.hdfgroup.org/
@@ -28,23 +28,34 @@ Patch9: hdf-ppc64le.patch
 # Use only if java is disabled
 Patch10: hdf-avoid_syntax_error_el6.patch
 
+# Fix java build
+Patch11: hdf-build.patch
+
 # For destdir/examplesdir patches
 BuildRequires: automake, libtool, gcc, gcc-c++
+BuildRequires: chrpath
 BuildRequires: flex byacc libjpeg-devel zlib-devel %{!?el6:libaec-devel}
 BuildRequires: libtirpc-devel
 BuildRequires: gcc-gfortran, gcc
+BuildRequires: java-devel
+BuildRequires: javapackages-tools
+BuildRequires: hamcrest
+BuildRequires: junit
+BuildRequires: slf4j
+
 
 %description
-HDF is a general purpose library and file format for storing scientific data.
+HDF4 is a general purpose library and file format for storing scientific data.
-HDF can store two primary objects: datasets and groups. A dataset is 
+HDF4 can store two primary objects: datasets and groups. A dataset is
-essentially a multidimensional array of data elements, and a group is a 
+essentially a multidimensional array of data elements, and a group is a
-structure for organizing objects in an HDF file. Using these two basic 
+structure for organizing objects in an HDF4 file. Using these two basic
-objects, one can create and store almost any kind of scientific data 
+objects, one can create and store almost any kind of scientific data
-structure, such as images, arrays of vectors, and structured and unstructured 
+structure, such as images, arrays of vectors, and structured and unstructured
-grids. You can also mix and match them in HDF files according to your needs.
+grids. You can also mix and match them in HDF4 files according to your needs.
+
 
 %package devel
-Summary: HDF development files
+Summary: HDF4 development files
 Provides: %{name}-static = %{version}-%{release}
 Requires: %{name}%{?_isa} = %{version}-%{release}
 Requires: libjpeg-devel%{?_isa}
@@ -52,7 +63,25 @@ Requires: libtirpc-devel%{?_isa}
 Requires: zlib-devel%{?_isa}
 
 %description devel
-HDF development headers and libraries.
+HDF4 development headers and libraries.
+
+
+%package static
+Summary: HDF4 static libraries
+Requires: %{name}-devel = %{version}-%{release}
+
+%description static
+HDF4 static libraries.
+
+
+%package -n java-hdf
+Summary: HDF4 java library
+Requires:  slf4j
+Obsoletes: jhdf < 3.3.1-2
+
+%description -n java-hdf
+HDF4 java library
+
 
 %prep
 %setup -q
@@ -66,6 +95,19 @@ HDF development headers and libraries.
 %patch6 -p1 -b .examplesdir
 %patch8 -p1 -b .aarch64
 %patch9 -p1 -b .ppc64le
+%patch11 -p1 -b .build
+
+# Replace jars with system versions
+find -name \*.jar -delete
+ln -s %{_javadir}/hamcrest/core.jar java/lib/hamcrest-core.jar
+ln -s %{_javadir}/junit.jar java/lib/junit.jar
+ln -s %{_javadir}/slf4j/api.jar java/lib/slf4j-api-1.7.5.jar
+ln -s %{_javadir}/slf4j/nop.jar java/lib/ext/slf4j-nop-1.7.5.jar
+ln -s %{_javadir}/slf4j/simple.jar java/lib/ext/slf4j-simple-1.7.5.jar
+
+# Fix test output
+junit_ver=$(sed -n '/<version>/{s/^.*>\([0-9]\.[0-9]*\)<.*/\1/;p;q}' /usr/share/maven-poms/junit.pom)
+sed -i -e "s/JUnit version .*/JUnit version $junit_ver/" java/test/testfiles/JUnit-*.txt
 
 ## Fix syntax error bacause 'CLASSPATH_ENV=$H4_CLASSPATH' line on epel6 builds
 # Use only if java is disabled
@@ -79,6 +121,7 @@ find . -type f -name "*.c" -exec chmod 0644 '{}' \;
 # restore include file timestamps modified by patching
 touch -c -r ./hdf/src/hdfi.h.ppc ./hdf/src/hdfi.h
 
+
 %build
 
 # For destdir/examplesdir patches
@@ -86,15 +129,27 @@ autoreconf -vif
 # avoid upstream compiler flags settings
 rm config/*linux-gnu
 # TODO: upstream fix
-# Shared libraries disabled: libmfhdf.so is not correctly compiled
+# libmfhdf.so is link to libdf.so
-# for missing link to libdf.so
+export CFLAGS="%{optflags} -I%{_includedir}/tirpc"
-export CFLAGS="%{optflags} -fPIC -I%{_includedir}/tirpc"
 export LIBS="-ltirpc"
-export FFLAGS="%{optflags} -fPIC -ffixed-line-length-none"
+%global _configure ../configure
+# Java test needs this but doesn't create it
+mkdir -p build-shared/java/lib
+cd build-shared
+# Java requires shared libraries, fortran requires static
+%configure --disable-production --enable-java --disable-netcdf \
+ --enable-shared=yes --enable-static=no --disable-fortran %{!?el6:--with-szlib} \
+ --includedir=%{_includedir}/%{name} --libdir=%{_libdir}/%{name}
+%make_build
+cd -
+mkdir build-static
+cd build-static
+# Java requires shared libraries, fortran requires static
 %configure --disable-production --disable-java --disable-netcdf \
  --enable-shared=no --enable-static=yes --enable-fortran %{!?el6:--with-szlib} \
  --includedir=%{_includedir}/%{name} --libdir=%{_libdir}/%{name}
 %make_build
+cd -
 
 # correct the timestamps based on files used to generate the header files
 touch -c -r hdf/src/hdf.inc hdf/src/hdf.f90
@@ -102,8 +157,11 @@ touch -c -r hdf/src/dffunc.inc hdf/src/dffunc.f90
 touch -c -r mfhdf/fortran/mffunc.inc mfhdf/fortran/mffunc.f90
 # netcdf fortran include need same treatement, but they are not shipped
 
+
 %install
-%make_install
+%make_install -C build-static
+%make_install -C build-shared
+chrpath --delete --keepgoing %{buildroot}%{_bindir}/* %{buildroot}%{_libdir}/%{name}/*.so.* || :
 
 install -pm 644 MANIFEST README.txt release_notes/*.txt %{buildroot}%{_pkgdocdir}/
 
@@ -128,22 +186,40 @@ touch -c -r h4config.h h4config.h.tmp
 mv h4config.h.tmp h4config.h
 popd
 
+
 %check
-make -j1 check
+make -j1 -C build-shared check
+make -j1 -C build-static check
+
 
 %files
 %license COPYING
 %{_pkgdocdir}/
 %exclude %{_pkgdocdir}/examples
 %{_bindir}/*
+%dir %{_libdir}/%{name}
+%{_libdir}/%{name}/*.so.0*
 %{_mandir}/man1/*.gz
 
 %files devel
 %{_includedir}/%{name}/
-%{_libdir}/%{name}/
+%{_libdir}/%{name}/*.so
+%{_libdir}/%{name}/*.settings
 %{_pkgdocdir}/examples/
 
+%files static
+%{_libdir}/%{name}/*.a
+
+%files -n java-hdf
+%{_jnidir}/hdf.jar
+%{_libdir}/%{name}/libhdf_java.so
+
+
 %changelog
+* Tue Apr 9 2019 Orion Poplawski <orion@nwra.com> - 4.2.14-3
+- Build shared libraries
+- Enable java
+
 * Fri Feb 01 2019 Fedora Release Engineering <releng@fedoraproject.org> - 4.2.14-2
 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
 
@@ -169,7 +245,7 @@ make -j1 check
 - Rebuild for gcc 8.0
 
 * Sat Jan 20 2018 Antonio Trande <sagitter@fedoraproject.org> 4.2.13-5
-- Enable szlib support 
+- Enable szlib support
 
 * Wed Jan 17 2018 Pavel Raiskup <praiskup@redhat.com> - 4.2.13-4
 - rpc api moved from glibc to libtirpc: