.gitignore

@@ -11,12 +11,3 @@
 /h5py-2.6.0.tar.gz
 /h5py-2.7.0.tar.gz
 /h5py-2.7.1.tar.gz
-/h5py-2.8.0.tar.gz
-/h5py-2.9.0.tar.gz
-/h5py-2.10.0.tar.gz
-/h5py-3.0.0.tar.gz
-/h5py-3.1.0.tar.gz
-/h5py-3.2.1.tar.gz
-/h5py-3.4.0.tar.gz
-/h5py-3.6.0.tar.gz
-/h5py-3.7.0.tar.gz

h5py-3.7.0-ppc-float128.patch

@@ -1,23 +0,0 @@
-diff -up h5py-3.7.0/h5py/h5t.pyx.orig h5py-3.7.0/h5py/h5t.pyx
---- h5py-3.7.0/h5py/h5t.pyx.orig	2022-06-14 16:31:22.964458579 +0000
-+++ h5py-3.7.0/h5py/h5t.pyx	2022-06-14 16:31:46.404768118 +0000
-@@ -282,18 +282,7 @@ cdef (int, int, int) _correct_float_info
-     nmant = finfo.nmant
-     maxexp = finfo.maxexp
-     minexp = finfo.minexp
--    # workaround for numpy's buggy finfo on float128 on ppc64 archs
--    if ftype_ == np.longdouble and MACHINE == 'ppc64':
--        # values reported by hdf5
--        nmant = 116
--        maxexp = 1024
--        minexp = -1022
--    elif ftype_ == np.longdouble and MACHINE == 'ppc64le':
--        # values reported by hdf5
--        nmant = 52
--        maxexp = 1024
--        minexp = -1022
--    elif nmant == 63 and finfo.nexp == 15:
-+    if nmant == 63 and finfo.nexp == 15:
-         # This is an 80-bit float, correct mantissa size
-         nmant += 1
- 

h5py-system-lzf.patch

@@ -0,0 +1,41 @@
+diff -up h5py-2.7.0/lzf/lzf_filter.c.lzf h5py-2.7.0/lzf/lzf_filter.c
+--- h5py-2.7.0/lzf/lzf_filter.c.lzf	2016-12-17 16:12:17.000000000 -0700
++++ h5py-2.7.0/lzf/lzf_filter.c	2017-03-20 12:12:42.416002681 -0600
+@@ -26,7 +26,7 @@
+ #include <stdio.h>
+ #include <errno.h>
+ #include "hdf5.h"
+-#include "lzf/lzf.h"
++#include "lzf.h"
+ #include "lzf_filter.h"
+ 
+ /* Our own versions of H5Epush_sim, as it changed in 1.8 */
+diff -up h5py-2.7.0/setup_build.py.lzf h5py-2.7.0/setup_build.py
+--- h5py-2.7.0/setup_build.py.lzf	2016-12-17 16:12:17.000000000 -0700
++++ h5py-2.7.0/setup_build.py	2017-03-20 12:14:01.575626772 -0600
+@@ -31,12 +31,10 @@ MODULES =  ['defs','_errors','_objects',
+             'h5ds', 'h5ac']
+ 
+ 
+-EXTRA_SRC = {'h5z': [ localpath("lzf/lzf_filter.c"),
+-              localpath("lzf/lzf/lzf_c.c"),
+-              localpath("lzf/lzf/lzf_d.c")]}
++EXTRA_SRC = {'h5z': [ localpath("lzf/lzf_filter.c")]}
+ 
+ COMPILER_SETTINGS = {
+-   'libraries'      : ['hdf5', 'hdf5_hl'],
++   'libraries'      : ['hdf5', 'hdf5_hl', 'lzf'],
+    'include_dirs'   : [localpath('lzf')],
+    'library_dirs'   : [],
+    'define_macros'  : [('H5_USE_16_API', None)]
+@@ -103,10 +101,6 @@ class h5py_build_ext(build_ext):
+             settings['include_dirs'].insert(0, op.join(config.hdf5, 'include'))
+             settings['library_dirs'].insert(0, op.join(config.hdf5, 'lib'))
+ 
+-        # TODO: should this only be done on UNIX?
+-        if os.name != 'nt':
+-            settings['runtime_library_dirs'] = settings['library_dirs']
+-
+         def make_extension(module):
+             sources = [localpath('h5py', module+'.pyx')] + EXTRA_SRC.get(module, [])
+             return Extension('h5py.'+module, sources, **settings)

h5py.spec

@@ -1,310 +1,136 @@
-%global commit a8e82bcd63de14daddbc84c250a36c0ee8c850f6
+%global with_python3 1
-%global shortcommit %(c=%{commit}; echo ${c:0:7})
+
+%{?filter_provides_in: %filter_provides_in .*/h5py/.*\.so}
+%{?filter_setup}
 
 Summary:        A Python interface to the HDF5 library
 Name:           h5py
-Version:        3.7.0
+Version:        2.7.1
-Release:        3%{?dist}
+Release:        1%{?dist}
+Group:          Applications/Engineering
 License:        BSD
 URL:            http://www.h5py.org/
 Source0:        https://files.pythonhosted.org/packages/source/h/h5py/h5py-%{version}.tar.gz
-# drop the unnecessary workaround for float128 type after
+# patch to use a system liblzf rather than bundled liblzf
-# https://fedoraproject.org/wiki/Changes/PPC64LE_Float128_Transition
+Patch0:         h5py-system-lzf.patch
-# in F-36
-Patch0:         h5py-3.7.0-ppc-float128.patch
-BuildRequires:  gcc
-BuildRequires:  hdf5-devel
 BuildRequires:  liblzf-devel
-BuildRequires:  python%{python3_pkgversion}-Cython >= 0.23
+BuildRequires:  hdf5-devel >= 1.8.3
+BuildRequires:  python2-devel >= 2.6
+BuildRequires:  python-pkgconfig
+BuildRequires:  python-six
+BuildRequires:  python-sphinx
+BuildRequires:  numpy >= 1.6.1
+BuildRequires:  Cython
+%if 0%{?with_python3}
+BuildRequires:  python-tools
 BuildRequires:  python%{python3_pkgversion}-devel >= 3.2
-BuildRequires:  python%{python3_pkgversion}-setuptools
-BuildRequires:  python%{python3_pkgversion}-cached_property
-BuildRequires:  python%{python3_pkgversion}-numpy >= 1.7
 BuildRequires:  python%{python3_pkgversion}-pkgconfig
-BuildRequires:  python%{python3_pkgversion}-pip
-BuildRequires:  python%{python3_pkgversion}-pytest
-BuildRequires:  python%{python3_pkgversion}-pytest-mpi
 BuildRequires:  python%{python3_pkgversion}-six
-BuildRequires:  python%{python3_pkgversion}-sphinx
+BuildRequires:  python%{python3_pkgversion}-sphinx 
-# MPI builds
+BuildRequires:  python%{python3_pkgversion}-numpy >= 1.6.1
-BuildRequires:  hdf5-openmpi-devel
+BuildRequires:  python%{python3_pkgversion}-Cython
-BuildRequires:  openmpi-devel
+%endif
-BuildRequires:  python%{python3_pkgversion}-mpi4py-openmpi
-BuildRequires:  hdf5-mpich-devel
-BuildRequires:  mpich-devel
-BuildRequires:  python%{python3_pkgversion}-mpi4py-mpich
 
-%global _description\
+%description
-The h5py package provides both a high- and low-level interface to the\
+The h5py package provides both a high- and low-level interface to the
-HDF5 library from Python. The low-level interface is intended to be a\
+HDF5 library from Python. The low-level interface is intended to be a
-complete wrapping of the HDF5 API, while the high-level component\
+complete wrapping of the HDF5 API, while the high-level component
-supports access to HDF5 files, data sets and groups using established\
+supports access to HDF5 files, data sets and groups using established
-Python and NumPy concepts.\
+Python and NumPy concepts.
-\
+
-A strong emphasis on automatic conversion between Python (Numpy)\
+A strong emphasis on automatic conversion between Python (Numpy)
-data types and data structures and their HDF5 equivalents vastly\
+data types and data structures and their HDF5 equivalents vastly
 simplifies the process of reading and writing data from Python.
 
-%description %_description
+%package -n     python2-h5py
-
+Summary:        A Python 2 interface to the HDF5 library
-%package     -n python%{python3_pkgversion}-h5py
+Group:          Applications/Engineering
-Summary:        %{summary}
 Requires:       hdf5%{_isa} = %{_hdf5_version}
-Requires:       python%{python3_pkgversion}-cached_property
+Requires:       numpy >= 1.6.1
-Requires:       python%{python3_pkgversion}-numpy >= 1.7
+Requires:       python2-six
+%{?python_provide:%python_provide python2-h5py}
+Obsoletes:      h5py < 2.6.0-1
+Provides:       h5py = %{version}-%{release}
+
+%description -n python2-h5py
+The h5py package provides both a high- and low-level interface to the
+HDF5 library from Python. The low-level interface is intended to be a
+complete wrapping of the HDF5 API, while the high-level component
+supports access to HDF5 files, data sets and groups using established
+Python and NumPy concepts.
+
+A strong emphasis on automatic conversion between Python (Numpy)
+data types and data structures and their HDF5 equivalents vastly
+simplifies the process of reading and writing data from Python.
+This is the Python 2 version of h5py.
+
+%if 0%{?with_python3}
+%package -n     python%{python3_pkgversion}-h5py
+Summary:        A Python %{python3_version} interface to the HDF5 library
+Group:          Applications/Engineering
+Requires:       hdf5%{_isa} = %{_hdf5_version}
+Requires:       python%{python3_pkgversion}-numpy >= 1.6.1
 Requires:       python%{python3_pkgversion}-six
 %{?python_provide:%python_provide python%{python3_pkgversion}-h5py}
-%description -n python%{python3_pkgversion}-h5py %_description
 
-%package     -n python%{python3_pkgversion}-h5py-openmpi
+%description -n python%{python3_pkgversion}-h5py
-Summary:        A Python interface to the HDF5 library using OpenMPI
+The h5py package provides both a high- and low-level interface to the
-Requires:       hdf5%{_isa} = %{_hdf5_version}
+HDF5 library from Python. The low-level interface is intended to be a
-Requires:       python%{python3_pkgversion}-cached_property
+complete wrapping of the HDF5 API, while the high-level component
-Requires:       python%{python3_pkgversion}-numpy >= 1.7
+supports access to HDF5 files, data sets and groups using established
-Requires:       python%{python3_pkgversion}-six
+Python and NumPy concepts.
-Requires:       python3-mpi4py-openmpi
-Requires:       openmpi
-%description -n python%{python3_pkgversion}-h5py-openmpi %_description
-
-%package     -n python%{python3_pkgversion}-h5py-mpich
-Summary:        A Python interface to the HDF5 library using MPICH
-Requires:       hdf5%{_isa} = %{_hdf5_version}
-Requires:       python%{python3_pkgversion}-cached_property
-Requires:       python%{python3_pkgversion}-numpy >= 1.7
-Requires:       python%{python3_pkgversion}-six
-Requires:       python3-mpi4py-openmpi
-Requires:       python3-mpi4py-mpich
-Requires:       mpich
-%description -n python%{python3_pkgversion}-h5py-mpich %_description
 
+A strong emphasis on automatic conversion between Python (Numpy)
+data types and data structures and their HDF5 equivalents vastly
+simplifies the process of reading and writing data from Python.
+This is the Python %{python3_version} version of h5py.
+%endif
 
 %prep
-%setup -q -c -n %{name}-%{version}
+%setup -q
-%patch0
+# use system libzlf and remove private copy
-mv %{name}-%{version} serial
+%patch0 -p1 -b .lzf
-cd serial
+rm -rf lzf/lzf
-%{__python3} api_gen.py
+%{__python} api_gen.py
-cd -
-for x in mpich openmpi
-do
-  cp -al serial $x
-done
 
 
 %build
-# Upstream requires a specific numpy without this
-export H5PY_SETUP_REQUIRES=0
-export H5PY_SYSTEM_LZF=1
-# serial
 export CFLAGS="%{optflags} -fopenmp"
-cd serial
+%py2_build
+
+%if 0%{?with_python3}
 %py3_build
-cd -
-
-# MPI
-export CC=mpicc
-export HDF5_MPI="ON"
-
-# openmpi
-cd openmpi
-%{_openmpi_load}
-%py3_build
-%{_openmpi_unload}
-cd -
-
-# mpich
-cd mpich
-%{_mpich_load}
-%py3_build
-%{_mpich_unload}
-cd -
-
-
-%install
-# Upstream requires a specific numpy without this
-export H5PY_SETUP_REQUIRES=0
-export H5PY_SYSTEM_LZF=1
-# openmpi
-cd openmpi
-%py3_install
-rm -rf %{buildroot}%{python3_sitearch}/h5py/tests
-mkdir -p %{buildroot}%{python3_sitearch}/openmpi
-mv %{buildroot}%{python3_sitearch}/%{name}/ \
-   %{buildroot}%{python3_sitearch}/%{name}*.egg-info \
-   %{buildroot}%{python3_sitearch}/openmpi
-cd -
-
-# mpich
-cd mpich
-%py3_install
-rm -rf %{buildroot}%{python3_sitearch}/h5py/tests
-mkdir -p %{buildroot}%{python3_sitearch}/mpich
-mv %{buildroot}%{python3_sitearch}/%{name}/ \
-   %{buildroot}%{python3_sitearch}/%{name}*.egg-info \
-   %{buildroot}%{python3_sitearch}/mpich
-cd -
-
-# serial part must be last (not to overwrite files)
-cd serial
-%py3_install
-rm -rf %{buildroot}%{python3_sitearch}/h5py/tests
-cd -
-
-
-%check
-# Upstream requires a specific numpy without this
-export H5PY_SETUP_REQUIRES=0
-export H5PY_SYSTEM_LZF=1
-# i686 test failure
-# https://github.com/h5py/h5py/issues/1337
-# s390x test failure
-# https://github.com/h5py/h5py/issues/1739
-%ifarch %ix86
-fail=0
-%else
-fail=1
 %endif
 
-export PYTHONPATH=$(echo serial/build/lib*)
+%install
-%{__python3} -m pytest --pyargs h5py -rxXs ${PYTHONPATH} || exit $fail
+%py2_install
+chmod 0755 %{buildroot}%{python_sitearch}/%{name}/*.so
 
-# openmpi
+%if 0%{?with_python3}
-export PYTHONPATH=$(echo openmpi/build/lib*)
+%py3_install
-%{_openmpi_load}
+%endif
-mpirun %{__python3} -m pytest --pyargs h5py -rxXs --with-mpi ${PYTHONPATH} || exit $fail
-%{_openmpi_unload}
 
-# mpich
+%check
-export PYTHONPATH=$(echo mpich/build/lib*)
+%{__python2} setup.py test
-%{_mpich_load}
+%if 0%{?with_python3}
-mpirun %{__python3} -m pytest --pyargs h5py -rxXs --with-mpi ${PYTHONPATH} || exit $fail
+%{__python3} setup.py test
-%{_mpich_unload}
+%endif
 
+%files -n python2-h5py
+%license licenses/*.txt
+%doc ANN.rst README.rst examples
+%{python_sitearch}/%{name}/
+%{python_sitearch}/%{name}-%{version}-*.egg-info
 
+%if 0%{?with_python3}
 %files -n python%{python3_pkgversion}-h5py
-%license serial/licenses/*.txt
+%license licenses/*.txt
-#doc serial/ANN.rst serial/README.rst serial/examples
+%doc ANN.rst README.rst examples
-%doc serial/README.rst serial/examples
 %{python3_sitearch}/%{name}/
 %{python3_sitearch}/%{name}-%{version}-*.egg-info
-
+%endif
-%files -n python%{python3_pkgversion}-h5py-openmpi
-%license openmpi/licenses/*.txt
-%doc openmpi/README.rst
-%{python3_sitearch}/openmpi/%{name}/
-%{python3_sitearch}/openmpi/%{name}-%{version}-*.egg-info
-
-%files -n python%{python3_pkgversion}-h5py-mpich
-%license mpich/licenses/*.txt
-%doc mpich/README.rst
-%{python3_sitearch}/mpich/%{name}/
-%{python3_sitearch}/mpich/%{name}-%{version}-*.egg-info
-
 
 %changelog
-* Thu Jul 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 3.7.0-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
-
-* Mon Jun 13 2022 Python Maint <python-maint@redhat.com> - 3.7.0-2
-- Rebuilt for Python 3.11
-
-* Tue May 24 2022 Terje Rosten <terje.rosten@ntnu.no> - 3.7.0-1
-- Update to 3.7.0
-
-* Sun Jan 23 2022 Terje Rosten <terje.rosten@ntnu.no> - 3.6.0-1
-- Update to 3.6.0
-
-* Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 3.4.0-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
-
-* Sun Nov 21 2021 Orion Poplawski <orion@nwra.com> - 3.4.0-3
-- Rebuild for hdf5 1.12.1
-
-* Sun Oct 03 2021 Terje Rosten <terje.rosten@ntnu.no> - 3.4.0-2
-- Revert an upstream commit that caused crash in PySCF (rhbz#2009628)
-
-* Sat Sep 18 2021 Terje Rosten <terje.rosten@ntnu.no> - 3.4.0-1
-- Update to 3.4.0
-
-* Tue Aug 10 2021 Orion Poplawski <orion@nwra.com> - 3.2.1-4
-- Rebuild for hdf5 1.10.7
-
-* Thu Jul 22 2021 Fedora Release Engineering <releng@fedoraproject.org> - 3.2.1-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
-
-* Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 3.2.1-2
-- Rebuilt for Python 3.10
-
-* Tue Mar 09 2021 Orion Poplawski <orion@nwra.com> - 3.2.1-1
-- Update to 3.2.1
-
-* Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 3.1.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
-
-* Sat Nov 07 2020 Terje Rosten <terje.rosten@ntnu.no> - 3.1.0-1
-- Update to 3.1.0
-
-* Fri Oct 30 2020 Orion Poplawski <orion@nwra.com> - 3.0.0-1
-- Update to 3.0.0
-
-* Mon Jul 27 2020 Terje Rosten <terje.rosten@ntnu.no> - 2.10.0-4
-- Add openmpi and mpich subpackages
-
-* Thu Jun 25 2020 Orion Poplawski <orion@cora.nwra.com> - 2.10.0-3
-- Rebuild for hdf5 1.10.6
-
-* Tue May 26 2020 Miro Hrončok <mhroncok@redhat.com> - 2.10.0-2
-- Rebuilt for Python 3.9
-
-* Sun May 17 2020 Terje Rosten <terje.rosten@ntnu.no> - 2.10.0-1
-- Add commits from 2.10.x branch
-
-* Wed Jan 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.9.0-8
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
-
-* Thu Oct 03 2019 Miro Hrončok <mhroncok@redhat.com> - 2.9.0-7
-- Rebuilt for Python 3.8.0rc1 (#1748018)
-
-* Mon Aug 19 2019 Miro Hrončok <mhroncok@redhat.com> - 2.9.0-6
-- Rebuilt for Python 3.8
-
-* Thu Jul 25 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.9.0-5
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
-
-* Sat Mar 16 2019 Orion Poplawski <orion@nwra.com> - 2.9.0-4
-- Rebuild for hdf5 1.10.5
-
-* Fri Feb 01 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.9.0-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
-
-* Mon Jan 14 2019 Miro Hrončok <mhroncok@redhat.com> - 2.9.0-2
-- Subpackage python2-h5py has been removed
-  See https://fedoraproject.org/wiki/Changes/Mass_Python_2_Package_Removal
-
-* Mon Jan 7 2019 Orion Poplawski <orion@nwra.com> - 2.9.0-1
-- Update to 2.9.0
-- Drop python2 for Fedora 30+ (bug #1663834)
-
-* Fri Jul 13 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.8.0-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
-
-* Tue Jun 19 2018 Miro Hrončok <mhroncok@redhat.com> - 2.8.0-2
-- Rebuilt for Python 3.7
-
-* Tue Jun 05 2018 Terje Rosten <terje.rosten@ntnu.no> - 2.8.0-1
-- Update to 2.8.0
-
-* Thu Mar 01 2018 Iryna Shcherbina <ishcherb@redhat.com> - 2.7.1-4
-- Update Python 2 dependency declarations to new packaging standards
-  (See https://fedoraproject.org/wiki/FinalizingFedoraSwitchtoPython3)
-- Minor clean up
-
-* Tue Feb 13 2018 Christian Dersch <lupinix@mailbox.org> - 2.7.1-3
-- Added patch h5py-Dont-reorder-compound-types (required for new numpy>=1.14)
-
-* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.7.1-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
-
 * Mon Sep 04 2017 Terje Rosten <terje.rosten@ntnu.no> - 2.7.1-1
 - Update to 2.7.1
 

sources

@@ -1 +1 @@
-SHA512 (h5py-3.7.0.tar.gz) = c10a9a623c88dbc965238cb2057b8924492c762c29610cfdb24f26f878a7322e414d3e5c90d750c2f5cfe1b4949f884bc17f09a126b01a4721ad6e14761174a2
+SHA512 (h5py-2.7.1.tar.gz) = b702e3875c2767d2fabe66601820c517671fb5fc3321334aba081950b625435a1262554f39187cd1b41c6069e2b3826db6f0b610bfed2abe5db8a4dd8a29ecfd