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@ -1,136 +1,310 @@
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%global with_python3 1
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%{?filter_provides_in: %filter_provides_in .*/h5py/.*\.so}
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%{?filter_setup}
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%global commit a8e82bcd63de14daddbc84c250a36c0ee8c850f6
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%global shortcommit %(c=%{commit}; echo ${c:0:7})
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Summary: A Python interface to the HDF5 library
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Name: h5py
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Version: 2.7.1
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Release: 1%{?dist}
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Group: Applications/Engineering
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Version: 3.7.0
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Release: 3%{?dist}
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License: BSD
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URL: http://www.h5py.org/
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Source0: https://files.pythonhosted.org/packages/source/h/h5py/h5py-%{version}.tar.gz
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# patch to use a system liblzf rather than bundled liblzf
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Patch0: h5py-system-lzf.patch
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# drop the unnecessary workaround for float128 type after
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# https://fedoraproject.org/wiki/Changes/PPC64LE_Float128_Transition
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# in F-36
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Patch0: h5py-3.7.0-ppc-float128.patch
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BuildRequires: gcc
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BuildRequires: hdf5-devel
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BuildRequires: liblzf-devel
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BuildRequires: hdf5-devel >= 1.8.3
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BuildRequires: python2-devel >= 2.6
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BuildRequires: python-pkgconfig
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BuildRequires: python-six
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BuildRequires: python-sphinx
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BuildRequires: numpy >= 1.6.1
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BuildRequires: Cython
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%if 0%{?with_python3}
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BuildRequires: python-tools
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BuildRequires: python%{python3_pkgversion}-Cython >= 0.23
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BuildRequires: python%{python3_pkgversion}-devel >= 3.2
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BuildRequires: python%{python3_pkgversion}-setuptools
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BuildRequires: python%{python3_pkgversion}-cached_property
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BuildRequires: python%{python3_pkgversion}-numpy >= 1.7
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BuildRequires: python%{python3_pkgversion}-pkgconfig
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BuildRequires: python%{python3_pkgversion}-pip
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BuildRequires: python%{python3_pkgversion}-pytest
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BuildRequires: python%{python3_pkgversion}-pytest-mpi
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BuildRequires: python%{python3_pkgversion}-six
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BuildRequires: python%{python3_pkgversion}-sphinx
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BuildRequires: python%{python3_pkgversion}-numpy >= 1.6.1
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BuildRequires: python%{python3_pkgversion}-Cython
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%endif
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BuildRequires: python%{python3_pkgversion}-sphinx
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# MPI builds
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BuildRequires: hdf5-openmpi-devel
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BuildRequires: openmpi-devel
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BuildRequires: python%{python3_pkgversion}-mpi4py-openmpi
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BuildRequires: hdf5-mpich-devel
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BuildRequires: mpich-devel
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BuildRequires: python%{python3_pkgversion}-mpi4py-mpich
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%description
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The h5py package provides both a high- and low-level interface to the
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HDF5 library from Python. The low-level interface is intended to be a
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complete wrapping of the HDF5 API, while the high-level component
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supports access to HDF5 files, data sets and groups using established
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Python and NumPy concepts.
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A strong emphasis on automatic conversion between Python (Numpy)
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data types and data structures and their HDF5 equivalents vastly
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%global _description\
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The h5py package provides both a high- and low-level interface to the\
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HDF5 library from Python. The low-level interface is intended to be a\
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complete wrapping of the HDF5 API, while the high-level component\
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supports access to HDF5 files, data sets and groups using established\
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Python and NumPy concepts.\
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\
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A strong emphasis on automatic conversion between Python (Numpy)\
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data types and data structures and their HDF5 equivalents vastly\
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simplifies the process of reading and writing data from Python.
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%package -n python2-h5py
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Summary: A Python 2 interface to the HDF5 library
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Group: Applications/Engineering
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%description %_description
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%package -n python%{python3_pkgversion}-h5py
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Summary: %{summary}
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Requires: hdf5%{_isa} = %{_hdf5_version}
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Requires: numpy >= 1.6.1
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Requires: python2-six
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%{?python_provide:%python_provide python2-h5py}
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Obsoletes: h5py < 2.6.0-1
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Provides: h5py = %{version}-%{release}
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%description -n python2-h5py
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The h5py package provides both a high- and low-level interface to the
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HDF5 library from Python. The low-level interface is intended to be a
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complete wrapping of the HDF5 API, while the high-level component
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supports access to HDF5 files, data sets and groups using established
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Python and NumPy concepts.
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A strong emphasis on automatic conversion between Python (Numpy)
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data types and data structures and their HDF5 equivalents vastly
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simplifies the process of reading and writing data from Python.
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This is the Python 2 version of h5py.
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%if 0%{?with_python3}
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%package -n python%{python3_pkgversion}-h5py
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Summary: A Python %{python3_version} interface to the HDF5 library
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Group: Applications/Engineering
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Requires: hdf5%{_isa} = %{_hdf5_version}
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Requires: python%{python3_pkgversion}-numpy >= 1.6.1
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Requires: python%{python3_pkgversion}-cached_property
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Requires: python%{python3_pkgversion}-numpy >= 1.7
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Requires: python%{python3_pkgversion}-six
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%{?python_provide:%python_provide python%{python3_pkgversion}-h5py}
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%description -n python%{python3_pkgversion}-h5py %_description
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%description -n python%{python3_pkgversion}-h5py
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The h5py package provides both a high- and low-level interface to the
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HDF5 library from Python. The low-level interface is intended to be a
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complete wrapping of the HDF5 API, while the high-level component
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supports access to HDF5 files, data sets and groups using established
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Python and NumPy concepts.
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%package -n python%{python3_pkgversion}-h5py-openmpi
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Summary: A Python interface to the HDF5 library using OpenMPI
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Requires: hdf5%{_isa} = %{_hdf5_version}
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Requires: python%{python3_pkgversion}-cached_property
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Requires: python%{python3_pkgversion}-numpy >= 1.7
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Requires: python%{python3_pkgversion}-six
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Requires: python3-mpi4py-openmpi
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Requires: openmpi
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%description -n python%{python3_pkgversion}-h5py-openmpi %_description
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%package -n python%{python3_pkgversion}-h5py-mpich
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Summary: A Python interface to the HDF5 library using MPICH
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Requires: hdf5%{_isa} = %{_hdf5_version}
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Requires: python%{python3_pkgversion}-cached_property
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Requires: python%{python3_pkgversion}-numpy >= 1.7
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Requires: python%{python3_pkgversion}-six
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Requires: python3-mpi4py-openmpi
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Requires: python3-mpi4py-mpich
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Requires: mpich
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%description -n python%{python3_pkgversion}-h5py-mpich %_description
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A strong emphasis on automatic conversion between Python (Numpy)
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data types and data structures and their HDF5 equivalents vastly
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simplifies the process of reading and writing data from Python.
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This is the Python %{python3_version} version of h5py.
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%endif
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%prep
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%setup -q
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# use system libzlf and remove private copy
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%patch0 -p1 -b .lzf
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rm -rf lzf/lzf
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%{__python} api_gen.py
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%setup -q -c -n %{name}-%{version}
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%patch0
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mv %{name}-%{version} serial
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cd serial
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%{__python3} api_gen.py
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cd -
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for x in mpich openmpi
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do
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cp -al serial $x
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done
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%build
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# Upstream requires a specific numpy without this
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export H5PY_SETUP_REQUIRES=0
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export H5PY_SYSTEM_LZF=1
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# serial
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export CFLAGS="%{optflags} -fopenmp"
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%py2_build
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%if 0%{?with_python3}
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cd serial
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%py3_build
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%endif
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cd -
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# MPI
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export CC=mpicc
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export HDF5_MPI="ON"
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# openmpi
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cd openmpi
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%{_openmpi_load}
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%py3_build
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%{_openmpi_unload}
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cd -
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# mpich
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cd mpich
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%{_mpich_load}
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%py3_build
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%{_mpich_unload}
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cd -
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%install
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%py2_install
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chmod 0755 %{buildroot}%{python_sitearch}/%{name}/*.so
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%if 0%{?with_python3}
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# Upstream requires a specific numpy without this
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export H5PY_SETUP_REQUIRES=0
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export H5PY_SYSTEM_LZF=1
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# openmpi
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cd openmpi
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%py3_install
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%endif
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rm -rf %{buildroot}%{python3_sitearch}/h5py/tests
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mkdir -p %{buildroot}%{python3_sitearch}/openmpi
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mv %{buildroot}%{python3_sitearch}/%{name}/ \
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%{buildroot}%{python3_sitearch}/%{name}*.egg-info \
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%{buildroot}%{python3_sitearch}/openmpi
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cd -
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# mpich
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cd mpich
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%py3_install
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rm -rf %{buildroot}%{python3_sitearch}/h5py/tests
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mkdir -p %{buildroot}%{python3_sitearch}/mpich
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mv %{buildroot}%{python3_sitearch}/%{name}/ \
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%{buildroot}%{python3_sitearch}/%{name}*.egg-info \
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%{buildroot}%{python3_sitearch}/mpich
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cd -
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# serial part must be last (not to overwrite files)
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cd serial
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%py3_install
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rm -rf %{buildroot}%{python3_sitearch}/h5py/tests
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cd -
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%check
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%{__python2} setup.py test
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%if 0%{?with_python3}
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%{__python3} setup.py test
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# Upstream requires a specific numpy without this
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export H5PY_SETUP_REQUIRES=0
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export H5PY_SYSTEM_LZF=1
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# i686 test failure
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# https://github.com/h5py/h5py/issues/1337
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# s390x test failure
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# https://github.com/h5py/h5py/issues/1739
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%ifarch %ix86
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fail=0
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%else
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fail=1
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%endif
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%files -n python2-h5py
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%license licenses/*.txt
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%doc ANN.rst README.rst examples
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%{python_sitearch}/%{name}/
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%{python_sitearch}/%{name}-%{version}-*.egg-info
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export PYTHONPATH=$(echo serial/build/lib*)
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%{__python3} -m pytest --pyargs h5py -rxXs ${PYTHONPATH} || exit $fail
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# openmpi
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export PYTHONPATH=$(echo openmpi/build/lib*)
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%{_openmpi_load}
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mpirun %{__python3} -m pytest --pyargs h5py -rxXs --with-mpi ${PYTHONPATH} || exit $fail
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%{_openmpi_unload}
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# mpich
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export PYTHONPATH=$(echo mpich/build/lib*)
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%{_mpich_load}
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mpirun %{__python3} -m pytest --pyargs h5py -rxXs --with-mpi ${PYTHONPATH} || exit $fail
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%{_mpich_unload}
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%if 0%{?with_python3}
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%files -n python%{python3_pkgversion}-h5py
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%license licenses/*.txt
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%doc ANN.rst README.rst examples
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%license serial/licenses/*.txt
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#doc serial/ANN.rst serial/README.rst serial/examples
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%doc serial/README.rst serial/examples
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%{python3_sitearch}/%{name}/
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%{python3_sitearch}/%{name}-%{version}-*.egg-info
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%endif
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%files -n python%{python3_pkgversion}-h5py-openmpi
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%license openmpi/licenses/*.txt
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%doc openmpi/README.rst
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%{python3_sitearch}/openmpi/%{name}/
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%{python3_sitearch}/openmpi/%{name}-%{version}-*.egg-info
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%files -n python%{python3_pkgversion}-h5py-mpich
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%license mpich/licenses/*.txt
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%doc mpich/README.rst
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%{python3_sitearch}/mpich/%{name}/
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%{python3_sitearch}/mpich/%{name}-%{version}-*.egg-info
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%changelog
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* Thu Jul 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 3.7.0-3
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
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* Mon Jun 13 2022 Python Maint <python-maint@redhat.com> - 3.7.0-2
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- Rebuilt for Python 3.11
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* Tue May 24 2022 Terje Rosten <terje.rosten@ntnu.no> - 3.7.0-1
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- Update to 3.7.0
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* Sun Jan 23 2022 Terje Rosten <terje.rosten@ntnu.no> - 3.6.0-1
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- Update to 3.6.0
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* Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 3.4.0-4
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
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* Sun Nov 21 2021 Orion Poplawski <orion@nwra.com> - 3.4.0-3
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- Rebuild for hdf5 1.12.1
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* Sun Oct 03 2021 Terje Rosten <terje.rosten@ntnu.no> - 3.4.0-2
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- Revert an upstream commit that caused crash in PySCF (rhbz#2009628)
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* Sat Sep 18 2021 Terje Rosten <terje.rosten@ntnu.no> - 3.4.0-1
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- Update to 3.4.0
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* Tue Aug 10 2021 Orion Poplawski <orion@nwra.com> - 3.2.1-4
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- Rebuild for hdf5 1.10.7
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* Thu Jul 22 2021 Fedora Release Engineering <releng@fedoraproject.org> - 3.2.1-3
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
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* Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 3.2.1-2
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- Rebuilt for Python 3.10
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* Tue Mar 09 2021 Orion Poplawski <orion@nwra.com> - 3.2.1-1
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- Update to 3.2.1
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* Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 3.1.0-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
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* Sat Nov 07 2020 Terje Rosten <terje.rosten@ntnu.no> - 3.1.0-1
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- Update to 3.1.0
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* Fri Oct 30 2020 Orion Poplawski <orion@nwra.com> - 3.0.0-1
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- Update to 3.0.0
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* Mon Jul 27 2020 Terje Rosten <terje.rosten@ntnu.no> - 2.10.0-4
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- Add openmpi and mpich subpackages
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* Thu Jun 25 2020 Orion Poplawski <orion@cora.nwra.com> - 2.10.0-3
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- Rebuild for hdf5 1.10.6
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* Tue May 26 2020 Miro Hrončok <mhroncok@redhat.com> - 2.10.0-2
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- Rebuilt for Python 3.9
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* Sun May 17 2020 Terje Rosten <terje.rosten@ntnu.no> - 2.10.0-1
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- Add commits from 2.10.x branch
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* Wed Jan 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.9.0-8
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
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* Thu Oct 03 2019 Miro Hrončok <mhroncok@redhat.com> - 2.9.0-7
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- Rebuilt for Python 3.8.0rc1 (#1748018)
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* Mon Aug 19 2019 Miro Hrončok <mhroncok@redhat.com> - 2.9.0-6
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- Rebuilt for Python 3.8
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* Thu Jul 25 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.9.0-5
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
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* Sat Mar 16 2019 Orion Poplawski <orion@nwra.com> - 2.9.0-4
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- Rebuild for hdf5 1.10.5
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* Fri Feb 01 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.9.0-3
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
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* Mon Jan 14 2019 Miro Hrončok <mhroncok@redhat.com> - 2.9.0-2
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- Subpackage python2-h5py has been removed
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See https://fedoraproject.org/wiki/Changes/Mass_Python_2_Package_Removal
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* Mon Jan 7 2019 Orion Poplawski <orion@nwra.com> - 2.9.0-1
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- Update to 2.9.0
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- Drop python2 for Fedora 30+ (bug #1663834)
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* Fri Jul 13 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.8.0-3
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
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* Tue Jun 19 2018 Miro Hrončok <mhroncok@redhat.com> - 2.8.0-2
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- Rebuilt for Python 3.7
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* Tue Jun 05 2018 Terje Rosten <terje.rosten@ntnu.no> - 2.8.0-1
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- Update to 2.8.0
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* Thu Mar 01 2018 Iryna Shcherbina <ishcherb@redhat.com> - 2.7.1-4
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- Update Python 2 dependency declarations to new packaging standards
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(See https://fedoraproject.org/wiki/FinalizingFedoraSwitchtoPython3)
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- Minor clean up
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* Tue Feb 13 2018 Christian Dersch <lupinix@mailbox.org> - 2.7.1-3
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- Added patch h5py-Dont-reorder-compound-types (required for new numpy>=1.14)
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* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.7.1-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
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* Mon Sep 04 2017 Terje Rosten <terje.rosten@ntnu.no> - 2.7.1-1
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- Update to 2.7.1
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Fedora Release Engineering
Dan Horák
Python Maint
Terje Rosten
Orion Poplawski
Tomas Hrnciar
Miro Hrončok
Orion Poplawski
Iryna Shcherbina
Christian Dersch