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gdcm/gdcm.spec

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# Enabled by default
%bcond_without tests
%if 0%{?fedora} < 33
%undefine __cmake_in_source_build
%endif
Name: gdcm
Version: 3.0.12
Release: %autorelease
Summary: Grassroots DiCoM is a C++ library to parse DICOM medical files
License: BSD
URL: http://gdcm.sourceforge.net/wiki/index.php/Main_Page
# Use github release
Source0: https://github.com/malaterre/%{name}/archive/v%{version}/%{name}-%{version}.tar.gz
Source1: http://downloads.sourceforge.net/project/gdcm/gdcmData/gdcmData/gdcmData.tar.gz
Patch1: 0001-3.0.1-Use-copyright.patch
# Fix for 1687233
Patch3: 0002-Fix-export-variables.patch
BuildRequires: CharLS-devel >= 2.0
BuildRequires: cmake
BuildRequires: doxygen
BuildRequires: libxslt-devel
BuildRequires: dcmtk-devel
BuildRequires: docbook5-style-xsl
BuildRequires: docbook-style-xsl
BuildRequires: expat-devel
BuildRequires: fontconfig-devel
BuildRequires: gcc
BuildRequires: gcc-c++
BuildRequires: git-core
BuildRequires: graphviz
BuildRequires: gl2ps-devel
BuildRequires: libogg-devel
BuildRequires: libtheora-devel
BuildRequires: libuuid-devel
BuildRequires: mesa-libOSMesa-devel
BuildRequires: openssl-devel
BuildRequires: pkgconfig(libopenjp2)
BuildRequires: poppler-devel
BuildRequires: python3-devel
BuildRequires: swig
BuildRequires: sqlite-devel
BuildRequires: json-c-devel
BuildRequires: libxml2-devel
BuildRequires: make
# BuildRequires: vtk-devel
# Do not generate latex
# BuildRequires: /usr/bin/latex
# BuildRequires: /usr/bin/pdflatex
# BuildRequires: /usr/bin/dvips
# BuildRequires: /usr/bin/epstopdf
#BuildRequires: texlive-ec
%description
Grassroots DiCoM (GDCM) is a C++ library for DICOM medical files.
It supports ACR-NEMA version 1 and 2 (huffman compression is not supported),
RAW, JPEG, JPEG 2000, JPEG-LS, RLE and deflated transfer syntax.
It comes with a super fast scanner implementation to quickly scan hundreds of
DICOM files. It supports SCU network operations (C-ECHO, C-FIND, C-STORE,
C-MOVE). PS 3.3 & 3.6 are distributed as XML files.
It also provides PS 3.15 certificates and password based mechanism to
anonymize and de-identify DICOM datasets.
%package doc
Summary: Includes html documentation for gdcm
BuildArch: noarch
%description doc
You should install the gdcm-doc package if you would like to
access upstream documentation for gdcm.
%package applications
Summary: Includes command line programs for GDCM
Requires: %{name}%{?_isa} = %{version}-%{release}
%description applications
You should install the gdcm-applications package if you would like to
use command line programs part of GDCM. Includes tools to convert,
anonymize, manipulate, concatenate, and view DICOM files.
%package devel
Summary: Libraries and headers for GDCM
Requires: %{name}%{?_isa} = %{version}-%{release}
Requires: %{name}-applications%{?_isa} = %{version}-%{release}
%description devel
You should install the gdcm-devel package if you would like to
compile applications based on gdcm
%package examples
Summary: CSharp, C++, Java, PHP and Python example programs for GDCM
Requires: %{name}%{?_isa} = %{version}-%{release}
%description examples
GDCM examples
%package -n python3-gdcm
Summary: Python binding for GDCM
%{?python_provide:%python_provide python3-gdcm}
Requires: %{name}%{?_isa} = %{version}-%{release}
%description -n python3-gdcm
You should install the python3-gdcm package if you would like to
used this library with python
%prep
%autosetup -n GDCM-%{version} -S git
# Data source
%setup -n GDCM-%{version} -q -T -D -a 1
# Fix cmake command
sed -i.backup 's/add_dependency/add_dependencies/' Utilities/doxygen/CMakeLists.txt
# Stop doxygen from producing LaTeX output
sed -i.backup 's/^GENERATE_LATEX.*=.*YES/GENERATE_LATEX = NO/' Utilities/doxygen/doxyfile.in
# Remove bundled utilities (we use Fedora's ones)
rm -rf Utilities/gdcmexpat
rm -rf Utilities/gdcmopenjpeg-v1
rm -rf Utilities/gdcmopenjpeg-v2
rm -rf Utilities/gdcmzlib
rm -rf Utilities/gdcmuuid
rm -rf Utilities/gdcmcharls
# Remove bundled utilities (we don't use them)
rm -rf Utilities/getopt
rm -rf Utilities/pvrg
rm -rf Utilities/rle
rm -rf Utilities/wxWidgets
# Needed for testing:
#rm -rf Utilities/gdcmmd5
%build
%cmake .. \
-DCMAKE_VERBOSE_MAKEFILE=ON \
-DGDCM_INSTALL_PACKAGE_DIR=%{_libdir}/cmake/%{name} \
-DGDCM_INSTALL_INCLUDE_DIR=%{_includedir}/%{name} \
-DGDCM_INSTALL_DOC_DIR=%{_docdir}/%{name} \
-DGDCM_INSTALL_MAN_DIR=%{_mandir} \
-DGDCM_INSTALL_LIB_DIR=%{_libdir} \
-DGDCM_BUILD_TESTING:BOOL=ON \
-DGDCM_DATA_ROOT=../gdcmData/ \
-DGDCM_BUILD_EXAMPLES:BOOL=OFF \
-DGDCM_DOCUMENTATION:BOOL=OFF \
-DGDCM_WRAP_PYTHON:BOOL=ON \
-DPYTHON_EXECUTABLE=%{python3} \
-DGDCM_INSTALL_PYTHONMODULE_DIR=%{python3_sitearch} \
-DGDCM_WRAP_JAVA:BOOL=OFF \
-DGDCM_WRAP_CSHARP:BOOL=OFF \
-DGDCM_BUILD_SHARED_LIBS:BOOL=ON \
-DGDCM_BUILD_APPLICATIONS:BOOL=ON \
-DCMAKE_BUILD_TYPE:STRING="RelWithDebInfo" \
-DGDCM_USE_VTK:BOOL=OFF \
-DGDCM_USE_SYSTEM_CHARLS:BOOL=ON \
-DGDCM_USE_SYSTEM_EXPAT:BOOL=ON \
-DGDCM_USE_SYSTEM_OPENJPEG:BOOL=ON \
-DGDCM_USE_SYSTEM_ZLIB:BOOL=ON \
-DGDCM_USE_SYSTEM_UUID:BOOL=ON \
-DGDCM_USE_SYSTEM_LJPEG:BOOL=OFF \
-DGDCM_USE_SYSTEM_OPENSSL:BOOL=ON \
-DGDCM_USE_JPEGLS:BOOL=ON \
-DGDCM_USE_SYSTEM_LIBXML2:BOOL=ON \
-DGDCM_USE_SYSTEM_JSON:BOOL=ON \
-DGDCM_USE_SYSTEM_POPPLER:BOOL=ON
#Cannot build wrap_java:
# -DGDCM_VTK_JAVA_JAR:PATH=/usr/share/java/vtk.jar no found!
# yum provides */vtk.jar -> No results found
%cmake_build
%install
%cmake_install
install -d $RPM_BUILD_ROOT%{python3_sitearch}
# Install examples
install -d $RPM_BUILD_ROOT/%{_datadir}/%{name}/Examples/
cp -rv ./Examples/* $RPM_BUILD_ROOT/%{_datadir}/%{name}/Examples/
%if %{with tests}
%check
# Making the tests informative only for now. Several failing tests (27/228):
# 11,40,48,49,107-109,111-114,130-135,146,149,,151-154,157,194,216,219
make test -C %{__cmake_builddir} || exit 0
%endif
%files
%doc AUTHORS README.md
%license Copyright.txt README.Copyright.txt
%{_libdir}/libgdcmCommon.so.3.0
%{_libdir}/libgdcmCommon.so.3.0.12
%{_libdir}/libgdcmDICT.so.3.0
%{_libdir}/libgdcmDICT.so.3.0.12
%{_libdir}/libgdcmDSED.so.3.0
%{_libdir}/libgdcmDSED.so.3.0.12
%{_libdir}/libgdcmIOD.so.3.0
%{_libdir}/libgdcmIOD.so.3.0.12
%{_libdir}/libgdcmMEXD.so.3.0
%{_libdir}/libgdcmMEXD.so.3.0.12
%{_libdir}/libgdcmMSFF.so.3.0
%{_libdir}/libgdcmMSFF.so.3.0.12
%{_libdir}/libgdcmjpeg12.so.3.0
%{_libdir}/libgdcmjpeg12.so.3.0.12
%{_libdir}/libgdcmjpeg16.so.3.0
%{_libdir}/libgdcmjpeg16.so.3.0.12
%{_libdir}/libgdcmjpeg8.so.3.0
%{_libdir}/libgdcmjpeg8.so.3.0.12
%{_libdir}/libgdcmmd5.so.3.0
%{_libdir}/libgdcmmd5.so.3.0.12
%{_libdir}/libsocketxx.so.1.2
%{_libdir}/libsocketxx.so.1.2.0
%dir %{_datadir}/%{name}
%{_datadir}/%{name}-3.0/XML/
%exclude %{_docdir}/%{name}/html/
%exclude %{_docdir}/%{name}/Examples/
%files doc
#doc %{_docdir}/%{name}/html/
%files applications
%{_bindir}/gdcmanon
%{_bindir}/gdcmconv
%{_bindir}/gdcmdiff
%{_bindir}/gdcmdump
%{_bindir}/gdcmgendir
%{_bindir}/gdcmimg
%{_bindir}/gdcminfo
%{_bindir}/gdcmpap3
%{_bindir}/gdcmpdf
%{_bindir}/gdcmraw
%{_bindir}/gdcmscanner
%{_bindir}/gdcmscu
%{_bindir}/gdcmtar
%{_bindir}/gdcmxml
%doc %{_mandir}/man1/*.1*
%files devel
%{_includedir}/%{name}/
%{_libdir}/libgdcmCommon.so
%{_libdir}/libgdcmDICT.so
%{_libdir}/libgdcmDSED.so
%{_libdir}/libgdcmIOD.so
%{_libdir}/libgdcmMEXD.so
%{_libdir}/libgdcmMSFF.so
%{_libdir}/libgdcmjpeg12.so
%{_libdir}/libgdcmjpeg16.so
%{_libdir}/libgdcmjpeg8.so
%{_libdir}/libgdcmmd5.so
%{_libdir}/libsocketxx.so
%{_libdir}/cmake/%{name}/
%files examples
%{_datadir}/%{name}/Examples/
%files -n python3-gdcm
%{python3_sitearch}/%{name}*.py
%{python3_sitearch}/_%{name}swig.so
%{python3_sitearch}/__pycache__/%{name}*
%changelog
%autochangelog
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