gdcm/gdcm.spec

# we don't want to provide private python extension libs
%{?filter_setup:
%filter_provides_in %{python_sitearch}/.*\.so$
%filter_setup
}

Name:		gdcm
Version:	2.4.5
Release:	1%{?dist}
Summary:	Grassroots DiCoM is a C++ library to parse DICOM medical files
Group:		System Environment/Libraries
License:	BSD
URL:		http://gdcm.sourceforge.net/wiki/index.php/Main_Page
Source0:	http://sourceforge.net/projects/gdcm/files/gdcm%202.x/GDCM%20%{version}/%{name}-%{version}.tar.bz2
Source1:	http://downloads.sourceforge.net/project/gdcm/gdcmData/gdcmData/gdcmData.tar.gz

Patch1:	gdcm-2.4.0-inplace-build.patch
Patch2:	gdcm-2.4.0-usecopyright.patch
Patch3:	gdcm-2.4.0-install2libarch.patch
Patch4:	gdcm-2.4.0-no-versioned-dir.patch
# From http://public.kitware.com/pipermail/vtkusers/2013-February/127377.html
Patch5: gdcm-0005-support-vtk6.patch
Patch6: gdcm-2.4.0-find-python27.patch
# Fix FTBS - https://bugzilla.redhat.com/show_bug.cgi?id=1195879
# https://sourceforge.net/p/gdcm/bugs/345/
Patch7: gdcm-as.patch

BuildRequires:	CharLS-devel >= 1.0
BuildRequires:	cmake
BuildRequires:	doxygen
BuildRequires:	expat-devel
BuildRequires:	fontconfig-devel
BuildRequires:	graphviz
BuildRequires:	gl2ps-devel
BuildRequires:	libogg-devel
BuildRequires:	libtheora-devel
BuildRequires:	libuuid-devel
BuildRequires:	mesa-libOSMesa-devel
BuildRequires:	mysql-libs
BuildRequires:	mysql-devel
BuildRequires:	openssl-devel
BuildRequires:	openjpeg-devel
#BuildRequires:	/usr/bin/pdflatex
#BuildRequires:	poppler-devel
BuildRequires:	python2-devel
BuildRequires:	python3-devel
BuildRequires:	postgresql-devel
BuildRequires:	swig
#BuildRequires:	texlive-ec
#BuildRequires:	vtk-devel


%description
GDCM implements the dicom base standard part 5 that concentrates on image file
format. Hence GDCM supports the following formats:
- ACR-NEMA version 1 and 2 (huffman compression is not supported),
- DICOM version 3.0, including various encodings of JPEG - lossless & lossy-, 
RLE, J2K, deflated, JPEG-LS (very experimental) (MPEG2 compression is not 
supported)
- Papyrus V2 and V3 file headers should be readable, 

%package	doc
Summary:	Includes html documentation for gdcm
Group:		Documentation
BuildArch:	noarch

%description doc
You should install the gdcm-doc package if you would like to
access upstream documentation for gdcm.


%package	devel
Summary:	Libraries and headers for GDCM
Group:		Development/Libraries
Requires:	%{name}%{?_isa} = %{version}-%{release}

%description devel
You should install the gdcm-devel package if you would like to
compile applications based on gdcm

%package	examples
Summary:	CSharp, C++, Java, PHP and Python example programs for GDCM
Group:		Development/Languages
Requires:	%{name}%{?_isa} = %{version}-%{release}

%description examples
GDCM examples

%package	python
Summary:	Python binding for GDCM
Group:		Development/Libraries
Requires:	%{name}%{?_isa} = %{version}-%{release}

%description python
You should install the gdcm-python package if you would like to
used this library with python

%package -n	python3-gdcm
Summary:	Python binding for GDCM
Group:		Development/Libraries
Requires:	%{name}%{?_isa} = %{version}-%{release}

%description -n python3-gdcm
You should install the python3-gdcm package if you would like to
used this library with python

%prep
%setup -q
%setup -T -D -a 1
%patch1 -p 1
%patch2 -p 1
%patch3 -p 1
%patch4 -p 1
%patch5 -p 1
%patch7 -p 1 -b.as

# Remove bundled utilities (we use Fedora's ones)

rm -rf Utilities/gdcmexpat
rm -rf Utilities/gdcmopenjpeg
rm -rf Utilities/gdcmzlib
rm -rf Utilities/gdcmuuid
rm -rf Utilities/gdcmcharls

# Remove bundled utilities (we don't use them)
rm -rf Utilities/getopt
rm -rf Utilities/pvrg
rm -rf Utilities/rle
rm -rf Utilities/wxWidgets

# Needed for testing:
#rm -rf Utilities/gdcmmd5 

# prepare python3 build
rm -rf %{py3dir}
cp -a . %{py3dir}

# apply patch after copying files for python3 build
%patch6 -p 1

%build
# build python3 build
pushd %{py3dir}

mkdir -p %{_target_platform}
pushd %{_target_platform}

%cmake	.. \
	-DCMAKE_VERBOSE_MAKEFILE=ON \
	-DGDCM_BUILD_TESTING=OFF \
	-DGDCM_DATA_ROOT=../gdcmData/ \
	-DGDCM_BUILD_EXAMPLES:BOOL=OFF \
	-DGDCM_DOCUMENTATION:BOOL=OFF \
	-DGDCM_PDF_DOCUMENTATION:BOOL=OFF \
	-DGDCM_WRAP_PYTHON:BOOL=ON \
	-DPYTHON_EXECUTABLE=%{__python3} \
	-DGDCM_INSTALL_PYTHONMODULE_DIR=%{python3_sitearch} \
	-DGDCM_WRAP_JAVA=OFF \
	-DGDCM_BUILD_SHARED_LIBS:BOOL=ON \
	-DGDCM_BUILD_APPLICATIONS:BOOL=ON \
	-DCMAKE_BUILD_TYPE:STRING="RelWithDebInfo" \
	-DGDCM_USE_VTK:BOOL=OFF \
	-DGDCM_USE_SYSTEM_CHARLS=ON \
	-DGDCM_USE_SYSTEM_EXPAT=ON \
	-DGDCM_USE_SYSTEM_OPENJPEG=ON \
	-DGDCM_USE_SYSTEM_ZLIB=ON \
	-DGDCM_USE_SYSTEM_UUID=ON \
	-DGDCM_USE_SYSTEM_LJPEG=OFF \
	-DGDCM_USE_SYSTEM_OPENSSL=ON \
	-DGDCM_USE_JPEGLS=ON \
	-DGDCM_USE_SYSTEM_POPPLER=OFF
popd

make %{?_smp_mflags} -C %{_target_platform}
popd
# end python3

mkdir -p %{_target_platform}
pushd %{_target_platform}

%cmake	.. \
	-DCMAKE_VERBOSE_MAKEFILE=ON \
	-DGDCM_BUILD_TESTING=ON \
	-DGDCM_DATA_ROOT=../gdcmData/ \
	-DGDCM_BUILD_EXAMPLES:BOOL=ON \
	-DGDCM_DOCUMENTATION:BOOL=ON \
	-DGDCM_PDF_DOCUMENTATION:BOOL=OFF \
	-DGDCM_WRAP_PYTHON:BOOL=ON \
	-DPYTHON_EXECUTABLE=%{__python2} \
	-DGDCM_INSTALL_PYTHONMODULE_DIR=%{python2_sitearch} \
	-DGDCM_WRAP_JAVA=OFF \
	-DGDCM_BUILD_SHARED_LIBS:BOOL=ON \
	-DGDCM_BUILD_APPLICATIONS:BOOL=ON \
	-DCMAKE_BUILD_TYPE:STRING="RelWithDebInfo" \
	-DGDCM_USE_VTK:BOOL=OFF \
	-DGDCM_USE_SYSTEM_CHARLS=ON \
	-DGDCM_USE_SYSTEM_EXPAT=ON \
	-DGDCM_USE_SYSTEM_OPENJPEG=ON \
	-DGDCM_USE_SYSTEM_ZLIB=ON \
	-DGDCM_USE_SYSTEM_UUID=ON \
	-DGDCM_USE_SYSTEM_LJPEG=OFF \
	-DGDCM_USE_SYSTEM_OPENSSL=ON \
	-DGDCM_USE_JPEGLS=ON \
	-DGDCM_USE_SYSTEM_POPPLER=OFF

#Cannot build wrap_java:
#	-DGDCM_VTK_JAVA_JAR:PATH=/usr/share/java/vtk.jar no found! 
#	yum provides */vtk.jar -> No results found

popd

make %{?_smp_mflags} -C %{_target_platform}

%install
# install python3 build
pushd %{py3dir}
make install DESTDIR=$RPM_BUILD_ROOT -C %{_target_platform}
install -d $RPM_BUILD_ROOT%{python3_sitearch}
popd

make install DESTDIR=$RPM_BUILD_ROOT -C %{_target_platform}

## Rearranging directory layout and removing version from dir
mv $RPM_BUILD_ROOT%{_libdir}/%{name}/*.cmake $RPM_BUILD_ROOT%{_datadir}/%{name}/
rmdir $RPM_BUILD_ROOT%{_libdir}/%{name}

## Cleaning Example dir from cmake cache files + remove 0-length files
find %{_builddir}/%{?buildsubdir}/Examples -depth -name CMakeFiles | xargs rm -rf
find %{_builddir}/%{?buildsubdir}/Examples -depth -size 0 | xargs rm -rf

## Moving Example dir into _datadir
cp -r %{_builddir}/%{?buildsubdir}/Examples $RPM_BUILD_ROOT%{_datadir}/%{name}/

%check
# Making the tests informative only for now. Several failing tests (27/228):
# 11,40,48,49,107-109,111-114,130-135,146,149,,151-154,157,194,216,219
make test -C %{_target_platform} || exit 0

%post -p /sbin/ldconfig

%postun -p /sbin/ldconfig


%files
%doc AUTHORS Copyright.txt README.Copyright.txt README.txt
%doc %{_mandir}/man1/*.1*
%{_bindir}/*
%{_libdir}/*.so.*
%dir %{_datadir}/%{name}
%{_datadir}/%{name}/XML/
%exclude %{_docdir}/%{name}/html/

%files doc
%doc %{_docdir}/%{name}/html/

%files devel
%{_includedir}/%{name}/
%{_libdir}/*.so
%{_datadir}/%{name}/*.cmake

%files examples
%{_datadir}/%{name}/Examples/

%files python
%{python2_sitearch}/*

%files -n python3-gdcm
%{python3_sitearch}/*

%changelog
* Sat Aug 29 2015 Sebastian Pölsterl <sebp@k-d-w.org> - 2.4.5-1
- Update to 2.4.5

* Wed Jun 17 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.4.4-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild

* Mon Apr 20 2015 Ralf Corsépius <corsepiu@fedoraproject.org> - 2.4.4-5
- Rebuild for GCC-5.0.1 ABI changes.
- Fix broken %%changelog entries.

* Wed Feb 25 2015 Orion Poplawski <orion@cora.nwra.com> - 2.4.4-4
- Use upstream patch for python keyword conflict

* Tue Feb 24 2015 Orion Poplawski <orion@cora.nwra.com> - 2.4.4-3
- Add patch to fix FTBFS due to variable name/python keyword conflict (bug #1195879)

* Tue Feb 24 2015 Orion Poplawski <orion@cora.nwra.com> - 2.4.4-2
- Rebuild for gcc 5 C++11 ABI

* Thu Sep 25 2014 Sebastian Pölsterl <sebp@k-d-w.org> - 2.4.4-1
- Update to 2.4.4

* Sat Aug 16 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.4.3-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild

* Mon Aug 04 2014 Sebastian Pölsterl <sebp@k-d-w.org> - 2.4.3-2
- Exclude documentation files from base package

* Mon Aug 04 2014 Sebastian Pölsterl <sebp@k-d-w.org> - 2.4.3-1
- Update to 2.4.3

* Sat Jun 07 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.4.2-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild

* Wed May 28 2014 Kalev Lember <kalevlember@gmail.com> - 2.4.2-2
- Rebuilt for https://fedoraproject.org/wiki/Changes/Python_3.4

* Sat Apr 05 2014 Sebastian Pölsterl <sebp@k-d-w.org> - 2.4.2-1
- Update to 2.4.2

* Sun Dec 15 2013 Michael Schwendt <mschwendt@fedoraproject.org> - 2.4.1-2
- Include license file and a few doc files in base package
- Include directory /usr/share/gdcm in base package
- Remove obsolete cleaning of buildroot
- Add %%?_isa to base package deps
- Remove empty lines at beginning of %%descriptions
- Fix base package Group tag to "System Environment/Libraries"

* Wed Dec 11 2013 Sebastian Pölsterl <sebp@k-d-w.org> - 2.4.1-1
- Update to 2.4.1

* Wed Dec 11 2013 Mario Ceresa <mrceresa AT fedoraproject DOT org> - 2.4.0-4
- Fixes #1001298
- Minor fixes on the spec

* Tue Nov 19 2013 Sebastian Pölsterl <sebp@k-d-w.org> - 2.4.0-3
- More duplicate documentation files fixes
- Move examples to new subpackage

* Tue Nov 19 2013 Sebastian Pölsterl <sebp@k-d-w.org> - 2.4.0-2
- Fixed duplicate documentation files:
https://bugzilla.redhat.com/show_bug.cgi?id=1001298

* Sun Oct 20 2013 Sebastian Pölsterl <sebp@k-d-w.org> - 2.4.0-1
- Update to 2.4.0
- Added python3-gdcm package

* Tue Aug 13 2013 Mario Ceresa <mrceresa AT fedoraproject DOT org> - 2.2.4-5
- Still getting "vtkImageData has no member named 'GetWholeExtent" with vtk-devel
- Added additional debug symbols
- Enabled testing (for now informational only)
- Enabled build of gdcmd5 because its needed by tests
- Re-added graphviz BR 

* Mon Aug 05 2013 Mario Ceresa <mrceresa AT fedoraproject DOT org> - 2.2.4-4
- Fixed doc generation
- Disabled pdf generation util texlive problems are solved in Rawhide
- Fixed bogus dates

* Sat Aug 03 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.4-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild

* Tue Jul 16 2013 Mario Ceresa <mrceresa@fedoraproject.org> - 2.2.4-2
- Add support for vtk 6.0.0 

* Fri Jul 12 2013 Orion Poplawski <orion@cora.nwra.com> - 2.2.4-1
- Update to 2.2.4
- Rebuild for vtk 6.0.0

* Sun Jun 30 2013 Bruno Wolff III <bruno@wolff.to> - 2.2.3-3
- Rebuild for poppler soname bump

* Wed May 1 2013 Mario Ceresa <mrceresa@fedoraproject.org> - 2.2.3-1
- Upgrade to 2.2.3
- Drop upstreamed patches
- Added doc package
- Various fixes to spec file
- Dropped pdf documentation because cmake scripts still search for pdfopt


* Mon Feb 4 2013 Mario Ceresa <mrceresa@fedoraproject.org> - 2.0.18-8
- Added missing BR for pdflatex

* Fri Jan  25 2013 Mario Ceresa <mrceresa@fedoraproject.org> - 2.0.18-7
- Rebuild (poppler-0.22.0)

* Thu Jul 19 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.0.18-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild

* Mon Jul  2 2012 Marek Kasik <mkasik@redhat.com> - 2.0.18-5
- Rebuild (poppler-0.20.1)

* Wed May 16 2012 Marek Kasik <mkasik@redhat.com> - 2.0.18-4
- Rebuild (poppler-0.20.0)

* Thu Feb 09 2012 Rex Dieter <rdieter@fedoraproject.org> 2.0.18-3
- rebuild (openjpeg)

* Fri Jan 13 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.0.18-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild

* Tue Nov 01 2011 Orion Poplawski <orion@cora.nwra.com> - 2.0.18-1
- Update to 2.0.18
- Drop upstreamed patches
- Add -DGDCM_USE_SYSTEM_CHARLS=ON
- Add patch to fix charls include

* Fri Oct 28 2011 Rex Dieter <rdieter@fedoraproject.org> - 2.0.17-9
- rebuild(poppler)

* Wed Oct 19 2011 Mario Ceresa <mrceresa@fedoraproject.org> - 2.0.17-8
- Rebuild for vtk

* Fri Sep 30 2011 Marek Kasik <mkasik@redhat.com> - 2.0.17-7
- Rebuild (poppler-0.18.0)

* Mon Sep 19 2011 Marek Kasik <mkasik@redhat.com> - 2.0.17-6
- Rebuild (poppler-0.17.3)

* Mon Jul 25 2011 Rahul Sundaram <sundaram@fedoraproject.org> - 2.0.17-5
- Rebuild for cmake
- Clean up spec to match current guidelines

* Fri Jul 15 2011 Marek Kasik <mkasik@redhat.com> - 2.0.17-4
- Rebuild (poppler-0.17.0)

* Wed Apr 20 2011 Mario Ceresa <mrceresa@fedoraproject.org> - 2.0.17-3
- Bump release

* Sun Mar 27 2011 Mario Ceresa mrceresa gmailcom - 2.0.17-2
- Fixed BR mysql-libs

* Sat Mar 19 2011 Mario Ceresa mrceresa gmailcom - 2.0.17-1
- Updated to version 2.0.17

* Thu Mar 17 2011 Marek Kasik <mkasik@redhat.com> - 2.0.16-17
- Fix BuildRequires

* Sun Mar 13 2011 Marek Kasik <mkasik@redhat.com> - 2.0.16-16
- Rebuild (poppler-0.16.3)

* Sun Feb 20 2011 Orion Poplawski <orion@cora.nwra.com> - 2.0.16-15
- Rebuild for new vtk with fixed sonames

* Mon Feb 14 2011 Mario Ceresa <mrceresa@gmail.com> - 2.0.16-13
- Adapted to new version of CharLS lib (v 1.0)

* Tue Feb 08 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.0.16-12
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild

* Wed Feb 02 2011 Mario Ceresa <mrceresa@gmail.com> - 2.0.16-11
- Removed python bindings because they fail to build with gcc 4.6

* Wed Feb 02 2011 Mario Ceresa <mrceresa@gmail.com> - 2.0.16-10
- Added patch to fix upstream bug #3169784

* Sun Jan 02 2011 Rex Dieter <rdieter@fedoraproject.org> - 2.0.16-11
- rebuild (poppler)

* Wed Dec 15 2010 Rex Dieter <rdieter@fedoraproject.org> - 2.0.16-8
- rebuild (poppler)

* Mon Nov 22 2010 Mario Ceresa <mrceresa@gmail.com> 2.0.16-7
- Fixed bug 655738

* Fri Nov 19 2010 Mario Ceresa <mrceresa@gmail.com> 2.0.16-6
- Enabled VTK support

* Tue Oct 19 2010 Mario Ceresa <mrceresa@gmail.com> 2.0.16-5
- Filtered out private python extension lib
- Added documentation

* Tue Oct 19 2010 Mario Ceresa <mrceresa@gmail.com> 2.0.16-4
- Changed directory ownership

* Fri Oct 15 2010 Mario Ceresa <mrceresa@gmail.com> 2.0.16-3
- Rearranged directory layout to remove version in dir names

* Sat Sep 18 2010 Mario Ceresa <mrceresa@gmail.com> 2.0.16-2
- Added ExcludeArch for ppc and ppc64 because of a bug in doxygen
see https://bugzilla.redhat.com/show_bug.cgi?id=566725#c9

* Sat Sep 18 2010 Mario Ceresa <mrceresa@gmail.com> 2.0.16-1
- Updated to release 2.0.16
- Removed patch "stack_namespace" and "poppler_breaks_api" because
already included upstream
- Added swig and texlive-pdflatex to BuildRequires
- Moved python files to a separate package

* Sun Apr 11 2010 Mario Ceresa <mrceresa@gmail.com> 2.0.14-5
- Fixed some issues pointed out by Martin Gieseking. In details:
- BR to build documentation (tex + graphviz)
- Changed man page inclusion
- Fixed changelog format
- Removed VTK support because cmake 2.8 is needed to recognize vtk 5.4!
- Fixed python support

* Thu Mar 25 2010 Mario Ceresa <mrceresa@gmail.com> 2.0.14-4
- Added VTK support
- Added python support

* Sun Mar 21 2010 Mario Ceresa <mrceresa@gmail.com> 2.0.14-3
- Added BuildRequires fontconfig-devel
- Fixed lib /lib64 issue with base CMakeLists.txt

* Mon Mar 15 2010 Mario Ceresa <mrceresa@gmail.com> 2.0.14-2
- Added BuildRequires CharLS-devel

* Wed Feb 17 2010 Mario Ceresa <mrceresa@gmail.com> 2.0.14
- Initial RPM Release