- Drop upstreamed patches: do-not-run-as-root, bug-408505, bug-404448, osgi-unpack-sources - Patch to use mockito-core 1.9
- Fix API issues with Lucene 4. - Remove old Tomcat Servlet API bundle. - Use Glassfish EL instead of Tomcat EL.
- Enable bootstrap build to work around broken UA (Help) bundles.