534 lines
18 KiB
RPMSpec
534 lines
18 KiB
RPMSpec
Name: R
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Version: 2.7.0
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Release: 2%{?dist}
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Summary: A language for data analysis and graphics
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URL: http://www.r-project.org
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Source0: ftp://cran.r-project.org/pub/R/src/base/R-2/R-%{version}.tar.gz
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Source1: macros.R
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Source2: R-make-search-index.sh
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Patch0: R-2.7.0-bad-path.patch
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License: GPLv2+
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Group: Applications/Engineering
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BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
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BuildRequires: gcc-gfortran
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BuildRequires: gcc-c++, tetex-latex, texinfo-tex
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BuildRequires: libpng-devel, libjpeg-devel, readline-devel
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BuildRequires: tcl-devel, tk-devel, ncurses-devel
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BuildRequires: blas >= 3.0, pcre-devel, zlib-devel
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BuildRequires: java-1.5.0-gcj, lapack-devel
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BuildRequires: libSM-devel, libX11-devel, libICE-devel, libXt-devel
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BuildRequires: bzip2-devel, libXmu-devel
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BuildRequires: gcc-objc
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Requires: xdg-utils, cups
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# These are the submodules that R provides. Sometimes R modules say they
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# depend on one of these submodules rather than just R. These are
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# provided for packager convenience.
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Provides: R-base = %{version}
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Provides: R-boot = 1.2
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Provides: R-class = 7.2
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Provides: R-cluster = 1.11.10
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Provides: R-codetools = 0.2
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Provides: R-datasets = %{version}
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Provides: R-foreign = 0.8
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Provides: R-graphics = %{version}
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Provides: R-grDevices = %{version}
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Provides: R-grid = %{version}
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Provides: R-KernSmooth = 2.22
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Provides: R-lattice = 0.17
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Provides: R-MASS = 7.2
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Provides: R-methods = %{version}
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Provides: R-mgcv = 1.3
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Provides: R-nlme = 3.1
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Provides: R-nnet = 7.2
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Provides: R-rpart = 3.1
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Provides: R-spatial = 7.2
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Provides: R-splines = %{version}
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Provides: R-stats = %{version}
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Provides: R-stats4 = %{version}
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Provides: R-survival = 2.34
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Provides: R-tcltk = %{version}
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Provides: R-tools = %{version}
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Provides: R-utils = %{version}
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Provides: R-VR = 7.2
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%description
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A language and environment for statistical computing and graphics.
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R is similar to the award-winning S system, which was developed at
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Bell Laboratories by John Chambers et al. It provides a wide
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variety of statistical and graphical techniques (linear and
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nonlinear modelling, statistical tests, time series analysis,
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classification, clustering, ...).
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R is designed as a true computer language with control-flow
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constructions for iteration and alternation, and it allows users to
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add additional functionality by defining new functions. For
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computationally intensive tasks, C, C++ and Fortran code can be linked
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and called at run time.
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%package devel
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Summary: files for development of R packages.
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Group: Applications/Engineering
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Requires: R = %{version}
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# You need all the BuildRequires for the development version
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Requires: gcc-c++, gcc-gfortran, tetex-latex, texinfo
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Requires: libpng-devel, libjpeg-devel, readline-devel, ncurses-devel
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Requires: libSM-devel, libX11-devel, libICE-devel, libXt-devel
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Requires: bzip2-devel, libXmu-devel
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Requires: tcl-devel, tk-devel, pkgconfig
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%description devel
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Install R-devel if you are going to develop or compile R packages.
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%package -n libRmath
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Summary: standalone math library from the R project
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Group: Development/Libraries
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%description -n libRmath
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A standalone library of mathematical and statistical functions derived
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from the R project. This packages provides the shared libRmath library.
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%package -n libRmath-devel
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Summary: standalone math library from the R project
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Group: Development/Libraries
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Requires: libRmath = %{version}, pkgconfig
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%description -n libRmath-devel
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A standalone library of mathematical and statistical functions derived
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from the R project. This packages provides the static libRmath library
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and header files.
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%prep
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%setup -q
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%patch0 -p0
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# Filter false positive provides.
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cat <<EOF > %{name}-prov
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#!/bin/sh
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%{__perl_provides} \
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| grep -v 'File::Copy::Recursive' | grep -v 'Text::DelimMatch'
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EOF
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%define __perl_provides %{_builddir}/R-%{version}/%{name}-prov
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chmod +x %{__perl_provides}
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# Filter unwanted Requires:
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cat << \EOF > %{name}-req
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#!/bin/sh
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%{__perl_requires} \
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| grep -v 'perl(Text::DelimMatch)'
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EOF
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%define __perl_requires %{_builddir}/R-%{version}/%{name}-req
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chmod +x %{__perl_requires}
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%build
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# Add PATHS to Renviron for R_LIBS
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echo 'R_LIBS=${R_LIBS-'"'%{_libdir}/R/library:%{_datadir}/R/library'"'}' >> etc/Renviron.in
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export R_PDFVIEWER="%{_bindir}/xdg-open"
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export R_PRINTCMD="lpr"
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export R_BROWSER="%{_bindir}/xdg-open"
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case "%{_target_cpu}" in
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x86_64|mips64|ppc64|powerpc64|sparc64|s390x)
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export CC="gcc -m64"
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export CXX="g++ -m64"
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export F77="gfortran -m64"
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export FC="gfortran -m64"
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;;
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ia64)
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export CC="gcc"
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export CXX="g++"
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export F77="gfortran"
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export FC="gfortran"
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;;
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*)
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export CC="gcc -m32"
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export CXX="g++ -m32"
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export F77="gfortran -m32"
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export FC="gfortran -m32"
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;;
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esac
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export FCFLAGS="%{optflags}"
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( %configure \
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--with-system-zlib --with-system-bzlib --with-system-pcre \
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--with-lapack \
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--with-tcl-config=%{_libdir}/tclConfig.sh \
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--with-tk-config=%{_libdir}/tkConfig.sh \
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--enable-R-shlib \
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rdocdir=%{_docdir}/R-%{version} \
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rincludedir=%{_includedir}/R \
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rsharedir=%{_datadir}/R) \
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| grep -A30 'R is now' - > CAPABILITIES
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make
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(cd src/nmath/standalone; make)
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#make check-all
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make pdf
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make info
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%install
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make DESTDIR=${RPM_BUILD_ROOT} install install-info install-pdf
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rm -f ${RPM_BUILD_ROOT}%{_infodir}/dir
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rm -f ${RPM_BUILD_ROOT}%{_infodir}/dir.old
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install -p CAPABILITIES ${RPM_BUILD_ROOT}%{_docdir}/R-%{version}
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#Install libRmath files
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(cd src/nmath/standalone; make install DESTDIR=${RPM_BUILD_ROOT})
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mkdir -p $RPM_BUILD_ROOT/etc/ld.so.conf.d
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echo "%{_libdir}/R/lib" > $RPM_BUILD_ROOT/etc/ld.so.conf.d/%{name}-%{_arch}.conf
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mkdir -p $RPM_BUILD_ROOT%{_datadir}/R/library
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# Install rpm helper macros
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mkdir -p $RPM_BUILD_ROOT%{_sysconfdir}/rpm/
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install -m0644 %{SOURCE1} $RPM_BUILD_ROOT%{_sysconfdir}/rpm/
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# Install rpm helper script
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mkdir -p $RPM_BUILD_ROOT/usr/lib/rpm/
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install -m0755 %{SOURCE2} $RPM_BUILD_ROOT/usr/lib/rpm/
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# Fix multilib
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touch -r NEWS ${RPM_BUILD_ROOT}%{_docdir}/R-%{version}/CAPABILITIES
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touch -r NEWS doc/manual/*.pdf
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touch -r NEWS $RPM_BUILD_ROOT%{_bindir}/R
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%files
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%defattr(-, root, root)
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%{_bindir}/R
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%{_bindir}/Rscript
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%{_datadir}/R
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%dir %{_libdir}/R
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%{_libdir}/R/bin
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%{_libdir}/R/etc
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%{_libdir}/R/lib
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%{_libdir}/R/library
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%{_libdir}/R/modules
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%{_libdir}/R/COPYING
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%{_libdir}/R/NEWS
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%{_libdir}/R/SVN-REVISION
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/usr/lib/rpm/R-make-search-index.sh
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%{_infodir}/R-*.info*
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%{_sysconfdir}/rpm/macros.R
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%{_mandir}/man1/*
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%{_docdir}/R-%{version}
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%docdir %{_docdir}/R-%{version}
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/etc/ld.so.conf.d/*
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%files devel
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%defattr(-, root, root)
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%{_libdir}/pkgconfig/libR.pc
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%{_includedir}/R
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%files -n libRmath
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%defattr(-, root, root)
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%{_libdir}/libRmath.so
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%files -n libRmath-devel
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%defattr(-, root, root)
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%{_libdir}/libRmath.a
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%{_includedir}/Rmath.h
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%{_libdir}/pkgconfig/libRmath.pc
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%clean
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rm -rf ${RPM_BUILD_ROOT};
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%post
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# Create directory entries for info files
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# (optional doc files, so we must check that they are installed)
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for doc in admin exts FAQ intro lang; do
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file=%{_infodir}/R-${doc}.info.gz
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if [ -e $file ]; then
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/sbin/install-info ${file} %{_infodir}/dir 2>/dev/null || :
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fi
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done
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/sbin/ldconfig
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R CMD javareconf > /dev/null 2>&1 || exit 0
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# Update package indices
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%__cat %{_libdir}/R/library/*/CONTENTS > %{_docdir}/R-%{version}/html/search/index.txt 2>/dev/null
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# Don't use .. based paths, substitute RHOME
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sed -i "s!../../..!%{_libdir}/R!g" %{_docdir}/R-%{version}/html/search/index.txt
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# This could fail if there are no noarch R libraries on the system.
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%__cat %{_datadir}/R/library/*/CONTENTS >> %{_docdir}/R-%{version}/html/search/index.txt 2>/dev/null || exit 0
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# Don't use .. based paths, substitute /usr/share/R
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sed -i "s!../../..!/usr/share/R!g" %{_docdir}/R-%{version}/html/search/index.txt
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%preun
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if [ $1 = 0 ]; then
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# Delete directory entries for info files (if they were installed)
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for doc in admin exts FAQ intro lang; do
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file=%{_infodir}/R-${doc}.info.gz
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if [ -e ${file} ]; then
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/sbin/install-info --delete R-${doc} %{_infodir}/dir 2>/dev/null || :
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fi
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done
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fi
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%postun
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/sbin/ldconfig
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%post -n libRmath
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/sbin/ldconfig
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%postun -n libRmath
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/sbin/ldconfig
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%changelog
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* Tue May 13 2008 Tom "spot" Callaway <tcallawa@redhat.com> 2.7.0-2
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- add patch from Martyn Plummer to avoid possible bad path hardcoding in
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/usr/bin/Rscript
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- properly handle ia64 case (bz 446181)
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* Mon Apr 28 2008 Tom "spot" Callaway <tcallawa@redhat.com> 2.7.0-1
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- update to 2.70
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- rcompgen is no longer a standalone package
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- redirect javareconf to /dev/null (bz 442366)
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* Fri Feb 8 2008 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.2-1
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- properly version the items in the VR bundle
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- 2.6.2
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- don't use setarch for java setup
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- fix R post script file
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* Thu Jan 31 2008 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.1-4
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- multilib handling (thanks Martyn Plummer)
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- Update indices in the right place.
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* Mon Jan 7 2008 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.1-3
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- move INSTALL back into R main package, as it is useful without the
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other -devel bits (e.g. installing noarch package from CRAN)
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* Tue Dec 11 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.1-2
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- based on changes from Martyn Plummer <martyn.plummer@r-project.org>
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- use configure options rdocdir, rincludedir, rsharedir
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- use DESTDIR at installation
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- remove obsolete generation of packages.html
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- move header files and INSTALL R-devel package
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* Mon Nov 26 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.1-1
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- bump to 2.6.1
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* Tue Oct 30 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.0-3.1
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- fix missing perl requires
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* Mon Oct 29 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.0-3
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- fix multilib conflicts (bz 343061)
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* Mon Oct 29 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.0-2
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- add R CMD javareconf to post (bz 354541)
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- don't pickup bogus perl provides (bz 356071)
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- use xdg-open, drop requires for firefox/evince (bz 351841)
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* Thu Oct 4 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.0-1
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- bump to 2.6.0
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* Sun Aug 26 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.5.1-3
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- fix license tag
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- rebuild for ppc32
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* Thu Jul 5 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.5.1-2
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- add rpm helper macros, script
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* Mon Jul 2 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.5.1-1
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- drop patch, upstream fixed
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- bump to 2.5.1
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* Mon Apr 30 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.5.0-2
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- patch from Martyn Plummer fixes .pc files
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- add new BR: gcc-objc
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* Wed Apr 25 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.5.0-1
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- bump to 2.5.0
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* Tue Mar 13 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.4.1-4
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- get rid of termcap related requires, replace with ncurses
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- use java-1.5.0-gcj instead of old java-1.4.2
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- add /usr/share/R/library as a valid R_LIBS directory for noarch bits
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* Sun Feb 25 2007 Jef Spaleta <jspaleta@gmail.com> 2.4.1-3
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- rebuild for reverted tcl/tk
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* Fri Feb 2 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.4.1-2
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- rebuild for new tcl/tk
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* Tue Dec 19 2006 Tom "spot" Callaway <tcallawa@redhat.com> 2.4.1-1
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- bump to 2.4.1
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- fix install-info invocations in post/preun (bz 219407)
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* Fri Nov 3 2006 Tom "spot" Callaway <tcallawa@redhat.com> 2.4.0-2
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- sync with patched 2006-11-03 level to fix PR#9339
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* Sun Oct 15 2006 Tom "spot" Callaway <tcallawa@redhat.com> 2.4.0-1
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- bump for 2.4.0
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* Wed Sep 12 2006 Tom "spot" Callaway <tcallawa@redhat.com> 2.3.1-2
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- bump for FC-6
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* Fri Jun 2 2006 Tom "spot" Callaway <tcallawa@redhat.com> 2.3.1-1
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- bump to 2.3.1
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* Tue Apr 25 2006 Tom "spot" Callaway <tcallawa@redhat.com> 2.3.0-2
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- fix ppc build for FC-4 (artificial bump for everyone else)
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* Mon Apr 24 2006 Tom "spot" Callaway <tcallawa@redhat.com> 2.3.0-1
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- bump to 2.3.0 (also, bump module revisions)
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* Tue Feb 28 2006 Tom "spot" Callaway <tcallawa@redhat.com> 2.2.1-5
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- now BR is texinfo-tex, not texinfo in rawhide
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* Tue Feb 28 2006 Tom "spot" Callaway <tcallawa@redhat.com> 2.2.1-4
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- bump for FC-5
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* Mon Jan 9 2006 Tom "spot" Callaway <tcallawa@redhat.com> 2.2.1-3
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- fix BR: XFree86-devel for FC-5
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* Sat Dec 31 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.2.1-2
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- missing BR: libXt-devel for FC-5
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* Tue Dec 20 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.2.1-1
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- bump to 2.2.1
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* Thu Oct 6 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.2.0-2
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- use fixed system lapack for FC-4 and devel
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* Thu Oct 6 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.2.0-1
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- bump to 2.2.0
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* Mon Jul 4 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.1.1-2
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- fix version numbers on supplemental package provides
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* Mon Jun 20 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.1.1-1
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- bugfix update
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* Mon Apr 18 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.1.0-51
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- proper library handling
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* Mon Apr 18 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.1.0-50
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- 2.1.0, fc4 version.
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- The GNOME GUI is unbundled, now provided as a package on CRAN
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* Thu Apr 14 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.0.1-50
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- big bump. This is the fc4 package, the fc3 package is 2.0.1-11
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- enable gnome gui, add requires as needed
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* Thu Apr 14 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.0.1-10
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- bump for cvs errors
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* Mon Apr 11 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.0.1-9
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- fix URL for Source0
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* Mon Apr 11 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.0.1-8
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- spec file cleanup
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* Fri Apr 1 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.0.1-7
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- use evince instead of ggv
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- make custom provides for R subfunctions
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* Wed Mar 30 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.0.1-6
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- configure now calls --enable-R-shlib
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* Thu Mar 24 2005 Tom "spot" Callaway <tcallawa@redhat.com> 2.0.1-5
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- cleaned up package for Fedora Extras
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* Mon Feb 28 2005 Martyn Plummer <plummer@iarc.fr> 0:2.0.1-0.fdr.4
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- Fixed file ownership in R-devel and libRmath packages
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* Wed Feb 16 2005 Martyn Plummer <plummer@iarc.fr> 0:2.0.1-0.fdr.3
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- R-devel package is now a stub package with no files, except a documentation
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file (RPM won't accept sub-packages with no files). R now conflicts
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with earlier (i.e 0:2.0.1-0.fdr.2) versions of R-devel.
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- Created libRmath subpackage with shared library.
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* Mon Jan 31 2005 Martyn Plummer <plummer@iarc.fr> 0:2.0.1-0.fdr.2
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- Created R-devel and libRmath-devel subpackages
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* Mon Nov 15 2004 Martyn Plummer <plummer@iarc.fr> 0:2.0.1-0.fdr.1
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- Built R 2.0.1
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* Wed Nov 10 2004 Martyn Plummer <plummer@iarc.fr> 0:2.0.0-0.fdr.3
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- Set R_PRINTCMD at configure times so that by default getOption(printcmd)
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gives "lpr".
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- Define macro fcx for all Fedora distributions. This replaces Rinfo
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* Tue Oct 12 2004 Martyn Plummer <plummer@iarc.fr> 0:2.0.0-0.fdr.2
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- Info support is now conditional on the macro Rinfo, which is only
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defined for Fedora 1 and 2.
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* Thu Oct 7 2004 Martyn Plummer <plummer@iarc.fr> 0:2.0.0-0.fdr.1
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- Built R 2.0.0
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- There is no longer a BUGS file, so this is not installed as a
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documentation file.
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* Mon Aug 9 2004 Martyn Plummer <plummer@iarc.fr> 0:1.9.1-0.fdr.4
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- Added gcc-g++ to the list of BuildRequires for all platforms.
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Although a C++ compiler is not necessary to build R, it must
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be present at configure time or R will not be correctly configured
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to build packages containing C++ code.
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* Thu Jul 1 2004 Martyn Plummer <plummer@iarc.fr> 0:1.9.1-0.fdr.3
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- Modified BuildRequires so we can support older Red Hat versions without
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defining any macros.
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* Mon Jun 23 2004 Martyn Plummer <plummner@iarc.fr> 0:1.9.1-0.fdr.2
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- Added libtermcap-devel as BuildRequires for RH 8.0 and 9. Without
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this we get no readline support.
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* Mon Jun 21 2004 Martyn Plummer <plummner@iarc.fr> 0:1.9.1-0.fdr.1
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- Build R 1.9.1
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- Removed Xorg patch since fix is now in R sources
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* Mon Jun 14 2004 Martyn Plummer <plummer@iarc.fr> 0:1.9.0-0.fdr.4
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- Added XFree86-devel as conditional BuildRequires for rh9, rh80
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* Wed Jun 08 2004 Martyn Plummer <plummer@iarc.fr> 0:1.9.0-0.fdr.3
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- Corrected names for fc1/fc2/el3 when using conditional BuildRequires
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|
- Configure searches for C++ preprocessor and fails if we don't have
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gcc-c++ installed. Added to BuildRequires for FC2.
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* Tue Jun 08 2004 Martyn Plummer <plummer@iarc.fr> 0:1.9.0-0.fdr.2
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|
- Added patch to overcome problems with X.org headers (backported
|
|
from R 1.9.1; patch supplied by Graeme Ambler)
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|
- Changed permissions of source files to 644 to please rpmlint
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* Tue May 03 2004 Martyn Plummer <plummer@iarc.fr> 0:1.9.0-0.fdr.1
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- R.spec file now has mode 644. Previously it was unreadable by other
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|
users and this was causing a crash building under mach.
|
|
- Changed version number to conform to Fedora conventions.
|
|
- Removed Provides: and Obsoletes: R-base, R-recommended, which are
|
|
now several years old. Nobody should have a copy of R-base on a
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|
supported platform.
|
|
- Changed buildroot to Fedora standard
|
|
- Added Requires(post,preun): info
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|
- Redirect output from postinstall/uninstall scripts to /dev/null
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|
- Added BuildRequires tags necessary to install R with full
|
|
capabilities on a clean mach buildroot. Conditional buildrequires
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|
for tcl-devel and tk-devel which were not present on RH9 or earlier.
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* Thu Apr 01 2004 Martyn Plummer <plummer@iarc.fr>
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|
- Added patch to set environment variable LANG to C in shell wrapper,
|
|
avoiding warnings about UTF-8 locale not being supported
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* Mon Mar 15 2004 Martyn Plummer <plummer@iarc.fr>
|
|
- No need to export optimization flags. This is done by %configure
|
|
- Folded info installation into %makeinstall
|
|
- Check that RPM_BASE_ROOT is not set to "/" before cleaning up
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* Thu Feb 03 2004 Martyn Plummer <plummer@iarc.fr>
|
|
- Removed tcl-devel from BuildRequires
|
|
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* Tue Feb 03 2004 Martyn Plummer <plummer@iarc.fr>
|
|
- Changes from James Henstridge <james@daa.com.au> to allow building on IA64:
|
|
- Added BuildRequires for tcl-devel tk-devel tetex-latex
|
|
- Use the %configure macro to call the configure script
|
|
- Pass --with-tcl-config and --with-tk-config arguments to configure
|
|
- Set rhome to point to the build root during "make install"
|
|
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* Wed Jan 07 2004 Martyn Plummer <plummer@iarc.fr>
|
|
- Changed obsolete "copyright" field to "license"
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|
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* Fri Nov 21 2003 Martyn Plummer <plummer@iarc.fr>
|
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- Built 1.8.1
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