Name: R Version: 2.7.2 Release: 2%{?dist} Summary: A language for data analysis and graphics URL: http://www.r-project.org Source0: ftp://cran.r-project.org/pub/R/src/base/R-2/R-%{version}.tar.gz Source1: macros.R Source2: R-make-search-index.sh # Sent upstream: # http://bugs.r-project.org/cgi-bin/R/incoming?id=12636 Patch0: R-2.7.1-javareconf-tmpfix.patch Patch1: R-2.7.2-filter_asoption.patch License: GPLv2+ Group: Applications/Engineering BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) BuildRequires: gcc-gfortran BuildRequires: gcc-c++, tetex-latex, texinfo-tex BuildRequires: libpng-devel, libjpeg-devel, readline-devel BuildRequires: tcl-devel, tk-devel, ncurses-devel BuildRequires: blas >= 3.0, pcre-devel, zlib-devel BuildRequires: java-1.5.0-gcj, lapack-devel BuildRequires: libSM-devel, libX11-devel, libICE-devel, libXt-devel BuildRequires: bzip2-devel, libXmu-devel, cairo-devel BuildRequires: gcc-objc Requires: xdg-utils, cups # These are the submodules that R provides. Sometimes R modules say they # depend on one of these submodules rather than just R. These are # provided for packager convenience. Provides: R-base = %{version} Provides: R-boot = 1.2 Provides: R-class = 7.2 Provides: R-cluster = 1.11.11 Provides: R-codetools = 0.2 Provides: R-datasets = %{version} Provides: R-foreign = 0.8 Provides: R-graphics = %{version} Provides: R-grDevices = %{version} Provides: R-grid = %{version} Provides: R-KernSmooth = 2.22 Provides: R-lattice = 0.17 Provides: R-MASS = 7.2 Provides: R-methods = %{version} Provides: R-mgcv = 1.4 Provides: R-nlme = 3.1 Provides: R-nnet = 7.2 Provides: R-rpart = 3.1 Provides: R-spatial = 7.2 Provides: R-splines = %{version} Provides: R-stats = %{version} Provides: R-stats4 = %{version} Provides: R-survival = 2.34 Provides: R-tcltk = %{version} Provides: R-tools = %{version} Provides: R-utils = %{version} Provides: R-VR = 7.2 %description A language and environment for statistical computing and graphics. R is similar to the award-winning S system, which was developed at Bell Laboratories by John Chambers et al. It provides a wide variety of statistical and graphical techniques (linear and nonlinear modelling, statistical tests, time series analysis, classification, clustering, ...). R is designed as a true computer language with control-flow constructions for iteration and alternation, and it allows users to add additional functionality by defining new functions. For computationally intensive tasks, C, C++ and Fortran code can be linked and called at run time. %package devel Summary: files for development of R packages. Group: Applications/Engineering Requires: R = %{version}-%{release} # You need all the BuildRequires for the development version Requires: gcc-c++, gcc-gfortran, tetex-latex, texinfo Requires: libpng-devel, libjpeg-devel, readline-devel, ncurses-devel Requires: libSM-devel, libX11-devel, libICE-devel, libXt-devel Requires: bzip2-devel, libXmu-devel, cairo-devel Requires: tcl-devel, tk-devel, pkgconfig %description devel Install R-devel if you are going to develop or compile R packages. %package -n libRmath Summary: standalone math library from the R project Group: Development/Libraries %description -n libRmath A standalone library of mathematical and statistical functions derived from the R project. This packages provides the shared libRmath library. %package -n libRmath-devel Summary: standalone math library from the R project Group: Development/Libraries Requires: libRmath = %{version}, pkgconfig %description -n libRmath-devel A standalone library of mathematical and statistical functions derived from the R project. This packages provides the static libRmath library and header files. %prep %setup -q %patch0 -p1 -b .javareconf-tmpfix %patch1 -p1 -b .filter-little-out # Filter false positive provides. cat < %{name}-prov #!/bin/sh %{__perl_provides} \ | grep -v 'File::Copy::Recursive' | grep -v 'Text::DelimMatch' EOF %define __perl_provides %{_builddir}/R-%{version}/%{name}-prov chmod +x %{__perl_provides} # Filter unwanted Requires: cat << \EOF > %{name}-req #!/bin/sh %{__perl_requires} \ | grep -v 'perl(Text::DelimMatch)' EOF %define __perl_requires %{_builddir}/R-%{version}/%{name}-req chmod +x %{__perl_requires} %build # Add PATHS to Renviron for R_LIBS echo 'R_LIBS=${R_LIBS-'"'%{_libdir}/R/library:%{_datadir}/R/library'"'}' >> etc/Renviron.in export R_PDFVIEWER="%{_bindir}/xdg-open" export R_PRINTCMD="lpr" export R_BROWSER="%{_bindir}/xdg-open" case "%{_target_cpu}" in x86_64|mips64|ppc64|powerpc64|sparc64|s390x) export CC="gcc -m64" export CXX="g++ -m64" export F77="gfortran -m64" export FC="gfortran -m64" ;; ia64|alpha|sh*) export CC="gcc" export CXX="g++" export F77="gfortran" export FC="gfortran" ;; *) export CC="gcc -m32" export CXX="g++ -m32" export F77="gfortran -m32" export FC="gfortran -m32" ;; esac export FCFLAGS="%{optflags}" ( %configure \ --with-system-zlib --with-system-bzlib --with-system-pcre \ --with-lapack \ --with-tcl-config=%{_libdir}/tclConfig.sh \ --with-tk-config=%{_libdir}/tkConfig.sh \ --enable-R-shlib \ rdocdir=%{_docdir}/R-%{version} \ rincludedir=%{_includedir}/R \ rsharedir=%{_datadir}/R) \ | grep -A30 'R is now' - > CAPABILITIES make (cd src/nmath/standalone; make) #make check-all make pdf make info %install make DESTDIR=${RPM_BUILD_ROOT} install install-info install-pdf rm -f ${RPM_BUILD_ROOT}%{_infodir}/dir rm -f ${RPM_BUILD_ROOT}%{_infodir}/dir.old install -p CAPABILITIES ${RPM_BUILD_ROOT}%{_docdir}/R-%{version} #Install libRmath files (cd src/nmath/standalone; make install DESTDIR=${RPM_BUILD_ROOT}) mkdir -p $RPM_BUILD_ROOT/etc/ld.so.conf.d echo "%{_libdir}/R/lib" > $RPM_BUILD_ROOT/etc/ld.so.conf.d/%{name}-%{_arch}.conf mkdir -p $RPM_BUILD_ROOT%{_datadir}/R/library # Install rpm helper macros mkdir -p $RPM_BUILD_ROOT%{_sysconfdir}/rpm/ install -m0644 %{SOURCE1} $RPM_BUILD_ROOT%{_sysconfdir}/rpm/ # Install rpm helper script mkdir -p $RPM_BUILD_ROOT/usr/lib/rpm/ install -m0755 %{SOURCE2} $RPM_BUILD_ROOT/usr/lib/rpm/ # Fix multilib touch -r NEWS ${RPM_BUILD_ROOT}%{_docdir}/R-%{version}/CAPABILITIES touch -r NEWS doc/manual/*.pdf touch -r NEWS $RPM_BUILD_ROOT%{_bindir}/R # Fix html/packages.html # We can safely use RHOME here, because all of these are system packages. sed -i 's|\..\/\..|%{_libdir}/R|g' $RPM_BUILD_ROOT%{_docdir}/R-%{version}/html/packages.html for i in $RPM_BUILD_ROOT%{_libdir}/R/library/*/html/*.html; do sed -i 's|\..\/\..\/..\/doc|%{_docdir}/R-%{version}|g' $i done %files %defattr(-, root, root) %{_bindir}/R %{_bindir}/Rscript %{_datadir}/R %dir %{_libdir}/R %{_libdir}/R/bin %{_libdir}/R/etc %{_libdir}/R/lib %{_libdir}/R/library %{_libdir}/R/modules %{_libdir}/R/COPYING %{_libdir}/R/NEWS %{_libdir}/R/SVN-REVISION /usr/lib/rpm/R-make-search-index.sh %{_infodir}/R-*.info* %{_sysconfdir}/rpm/macros.R %{_mandir}/man1/* %{_docdir}/R-%{version} %docdir %{_docdir}/R-%{version} /etc/ld.so.conf.d/* %files devel %defattr(-, root, root) %{_libdir}/pkgconfig/libR.pc %{_includedir}/R %files -n libRmath %defattr(-, root, root) %{_libdir}/libRmath.so %files -n libRmath-devel %defattr(-, root, root) %{_libdir}/libRmath.a %{_includedir}/Rmath.h %{_libdir}/pkgconfig/libRmath.pc %clean rm -rf ${RPM_BUILD_ROOT}; %post # Create directory entries for info files # (optional doc files, so we must check that they are installed) for doc in admin exts FAQ intro lang; do file=%{_infodir}/R-${doc}.info.gz if [ -e $file ]; then /sbin/install-info ${file} %{_infodir}/dir 2>/dev/null || : fi done /sbin/ldconfig R CMD javareconf > /dev/null 2>&1 || exit 0 # Update package indices %__cat %{_libdir}/R/library/*/CONTENTS > %{_docdir}/R-%{version}/html/search/index.txt 2>/dev/null # Don't use .. based paths, substitute RHOME sed -i "s!../../..!%{_libdir}/R!g" %{_docdir}/R-%{version}/html/search/index.txt # This could fail if there are no noarch R libraries on the system. %__cat %{_datadir}/R/library/*/CONTENTS >> %{_docdir}/R-%{version}/html/search/index.txt 2>/dev/null || exit 0 # Don't use .. based paths, substitute /usr/share/R sed -i "s!../../..!/usr/share/R!g" %{_docdir}/R-%{version}/html/search/index.txt %preun if [ $1 = 0 ]; then # Delete directory entries for info files (if they were installed) for doc in admin exts FAQ intro lang; do file=%{_infodir}/R-${doc}.info.gz if [ -e ${file} ]; then /sbin/install-info --delete R-${doc} %{_infodir}/dir 2>/dev/null || : fi done fi %postun /sbin/ldconfig %post -n libRmath /sbin/ldconfig %postun -n libRmath /sbin/ldconfig %changelog * Thu Oct 16 2008 Tom "spot" Callaway 2.7.2-2 - fix sh compile (bz 464055) * Fri Aug 29 2008 Tom "spot" Callaway 2.7.2-1 - update to 2.7.2 - fix spec for alpha compile (bz 458931) - fix security issue in javareconf script (bz 460658) * Mon Jul 7 2008 Tom "spot" Callaway 2.7.1-1 - update to 2.7.1 * Wed May 28 2008 Tom "spot" Callaway 2.7.0-5 - add cairo-devel to BR/R, so that cairo backend gets built * Wed May 21 2008 Tom "spot" Callaway 2.7.0-4 - fixup sed invocation added in -3 - make -devel package depend on base R = version-release - fix bad paths in package html files * Wed May 21 2008 Tom "spot" Callaway 2.7.0-3 - fix poorly constructed file paths in html/packages.html (bz 442727) * Tue May 13 2008 Tom "spot" Callaway 2.7.0-2 - add patch from Martyn Plummer to avoid possible bad path hardcoding in /usr/bin/Rscript - properly handle ia64 case (bz 446181) * Mon Apr 28 2008 Tom "spot" Callaway 2.7.0-1 - update to 2.70 - rcompgen is no longer a standalone package - redirect javareconf to /dev/null (bz 442366) * Fri Feb 8 2008 Tom "spot" Callaway 2.6.2-1 - properly version the items in the VR bundle - 2.6.2 - don't use setarch for java setup - fix R post script file * Thu Jan 31 2008 Tom "spot" Callaway 2.6.1-4 - multilib handling (thanks Martyn Plummer) - Update indices in the right place. * Mon Jan 7 2008 Tom "spot" Callaway 2.6.1-3 - move INSTALL back into R main package, as it is useful without the other -devel bits (e.g. installing noarch package from CRAN) * Tue Dec 11 2007 Tom "spot" Callaway 2.6.1-2 - based on changes from Martyn Plummer - use configure options rdocdir, rincludedir, rsharedir - use DESTDIR at installation - remove obsolete generation of packages.html - move header files and INSTALL R-devel package * Mon Nov 26 2007 Tom "spot" Callaway 2.6.1-1 - bump to 2.6.1 * Tue Oct 30 2007 Tom "spot" Callaway 2.6.0-3.1 - fix missing perl requires * Mon Oct 29 2007 Tom "spot" Callaway 2.6.0-3 - fix multilib conflicts (bz 343061) * Mon Oct 29 2007 Tom "spot" Callaway 2.6.0-2 - add R CMD javareconf to post (bz 354541) - don't pickup bogus perl provides (bz 356071) - use xdg-open, drop requires for firefox/evince (bz 351841) * Thu Oct 4 2007 Tom "spot" Callaway 2.6.0-1 - bump to 2.6.0 * Sun Aug 26 2007 Tom "spot" Callaway 2.5.1-3 - fix license tag - rebuild for ppc32 * Thu Jul 5 2007 Tom "spot" Callaway 2.5.1-2 - add rpm helper macros, script * Mon Jul 2 2007 Tom "spot" Callaway 2.5.1-1 - drop patch, upstream fixed - bump to 2.5.1 * Mon Apr 30 2007 Tom "spot" Callaway 2.5.0-2 - patch from Martyn Plummer fixes .pc files - add new BR: gcc-objc * Wed Apr 25 2007 Tom "spot" Callaway 2.5.0-1 - bump to 2.5.0 * Tue Mar 13 2007 Tom "spot" Callaway 2.4.1-4 - get rid of termcap related requires, replace with ncurses - use java-1.5.0-gcj instead of old java-1.4.2 - add /usr/share/R/library as a valid R_LIBS directory for noarch bits * Sun Feb 25 2007 Jef Spaleta 2.4.1-3 - rebuild for reverted tcl/tk * Fri Feb 2 2007 Tom "spot" Callaway 2.4.1-2 - rebuild for new tcl/tk * Tue Dec 19 2006 Tom "spot" Callaway 2.4.1-1 - bump to 2.4.1 - fix install-info invocations in post/preun (bz 219407) * Fri Nov 3 2006 Tom "spot" Callaway 2.4.0-2 - sync with patched 2006-11-03 level to fix PR#9339 * Sun Oct 15 2006 Tom "spot" Callaway 2.4.0-1 - bump for 2.4.0 * Wed Sep 12 2006 Tom "spot" Callaway 2.3.1-2 - bump for FC-6 * Fri Jun 2 2006 Tom "spot" Callaway 2.3.1-1 - bump to 2.3.1 * Tue Apr 25 2006 Tom "spot" Callaway 2.3.0-2 - fix ppc build for FC-4 (artificial bump for everyone else) * Mon Apr 24 2006 Tom "spot" Callaway 2.3.0-1 - bump to 2.3.0 (also, bump module revisions) * Tue Feb 28 2006 Tom "spot" Callaway 2.2.1-5 - now BR is texinfo-tex, not texinfo in rawhide * Tue Feb 28 2006 Tom "spot" Callaway 2.2.1-4 - bump for FC-5 * Mon Jan 9 2006 Tom "spot" Callaway 2.2.1-3 - fix BR: XFree86-devel for FC-5 * Sat Dec 31 2005 Tom "spot" Callaway 2.2.1-2 - missing BR: libXt-devel for FC-5 * Tue Dec 20 2005 Tom "spot" Callaway 2.2.1-1 - bump to 2.2.1 * Thu Oct 6 2005 Tom "spot" Callaway 2.2.0-2 - use fixed system lapack for FC-4 and devel * Thu Oct 6 2005 Tom "spot" Callaway 2.2.0-1 - bump to 2.2.0 * Mon Jul 4 2005 Tom "spot" Callaway 2.1.1-2 - fix version numbers on supplemental package provides * Mon Jun 20 2005 Tom "spot" Callaway 2.1.1-1 - bugfix update * Mon Apr 18 2005 Tom "spot" Callaway 2.1.0-51 - proper library handling * Mon Apr 18 2005 Tom "spot" Callaway 2.1.0-50 - 2.1.0, fc4 version. - The GNOME GUI is unbundled, now provided as a package on CRAN * Thu Apr 14 2005 Tom "spot" Callaway 2.0.1-50 - big bump. This is the fc4 package, the fc3 package is 2.0.1-11 - enable gnome gui, add requires as needed * Thu Apr 14 2005 Tom "spot" Callaway 2.0.1-10 - bump for cvs errors * Mon Apr 11 2005 Tom "spot" Callaway 2.0.1-9 - fix URL for Source0 * Mon Apr 11 2005 Tom "spot" Callaway 2.0.1-8 - spec file cleanup * Fri Apr 1 2005 Tom "spot" Callaway 2.0.1-7 - use evince instead of ggv - make custom provides for R subfunctions * Wed Mar 30 2005 Tom "spot" Callaway 2.0.1-6 - configure now calls --enable-R-shlib * Thu Mar 24 2005 Tom "spot" Callaway 2.0.1-5 - cleaned up package for Fedora Extras * Mon Feb 28 2005 Martyn Plummer 0:2.0.1-0.fdr.4 - Fixed file ownership in R-devel and libRmath packages * Wed Feb 16 2005 Martyn Plummer 0:2.0.1-0.fdr.3 - R-devel package is now a stub package with no files, except a documentation file (RPM won't accept sub-packages with no files). R now conflicts with earlier (i.e 0:2.0.1-0.fdr.2) versions of R-devel. - Created libRmath subpackage with shared library. * Mon Jan 31 2005 Martyn Plummer 0:2.0.1-0.fdr.2 - Created R-devel and libRmath-devel subpackages * Mon Nov 15 2004 Martyn Plummer 0:2.0.1-0.fdr.1 - Built R 2.0.1 * Wed Nov 10 2004 Martyn Plummer 0:2.0.0-0.fdr.3 - Set R_PRINTCMD at configure times so that by default getOption(printcmd) gives "lpr". - Define macro fcx for all Fedora distributions. This replaces Rinfo * Tue Oct 12 2004 Martyn Plummer 0:2.0.0-0.fdr.2 - Info support is now conditional on the macro Rinfo, which is only defined for Fedora 1 and 2. * Thu Oct 7 2004 Martyn Plummer 0:2.0.0-0.fdr.1 - Built R 2.0.0 - There is no longer a BUGS file, so this is not installed as a documentation file. * Mon Aug 9 2004 Martyn Plummer 0:1.9.1-0.fdr.4 - Added gcc-g++ to the list of BuildRequires for all platforms. Although a C++ compiler is not necessary to build R, it must be present at configure time or R will not be correctly configured to build packages containing C++ code. * Thu Jul 1 2004 Martyn Plummer 0:1.9.1-0.fdr.3 - Modified BuildRequires so we can support older Red Hat versions without defining any macros. * Mon Jun 23 2004 Martyn Plummer 0:1.9.1-0.fdr.2 - Added libtermcap-devel as BuildRequires for RH 8.0 and 9. Without this we get no readline support. * Mon Jun 21 2004 Martyn Plummer 0:1.9.1-0.fdr.1 - Build R 1.9.1 - Removed Xorg patch since fix is now in R sources * Mon Jun 14 2004 Martyn Plummer 0:1.9.0-0.fdr.4 - Added XFree86-devel as conditional BuildRequires for rh9, rh80 * Wed Jun 08 2004 Martyn Plummer 0:1.9.0-0.fdr.3 - Corrected names for fc1/fc2/el3 when using conditional BuildRequires - Configure searches for C++ preprocessor and fails if we don't have gcc-c++ installed. Added to BuildRequires for FC2. * Tue Jun 08 2004 Martyn Plummer 0:1.9.0-0.fdr.2 - Added patch to overcome problems with X.org headers (backported from R 1.9.1; patch supplied by Graeme Ambler) - Changed permissions of source files to 644 to please rpmlint * Tue May 03 2004 Martyn Plummer 0:1.9.0-0.fdr.1 - R.spec file now has mode 644. Previously it was unreadable by other users and this was causing a crash building under mach. - Changed version number to conform to Fedora conventions. - Removed Provides: and Obsoletes: R-base, R-recommended, which are now several years old. Nobody should have a copy of R-base on a supported platform. - Changed buildroot to Fedora standard - Added Requires(post,preun): info - Redirect output from postinstall/uninstall scripts to /dev/null - Added BuildRequires tags necessary to install R with full capabilities on a clean mach buildroot. Conditional buildrequires for tcl-devel and tk-devel which were not present on RH9 or earlier. * Thu Apr 01 2004 Martyn Plummer - Added patch to set environment variable LANG to C in shell wrapper, avoiding warnings about UTF-8 locale not being supported * Mon Mar 15 2004 Martyn Plummer - No need to export optimization flags. This is done by %configure - Folded info installation into %makeinstall - Check that RPM_BASE_ROOT is not set to "/" before cleaning up * Thu Feb 03 2004 Martyn Plummer - Removed tcl-devel from BuildRequires * Tue Feb 03 2004 Martyn Plummer - Changes from James Henstridge to allow building on IA64: - Added BuildRequires for tcl-devel tk-devel tetex-latex - Use the %configure macro to call the configure script - Pass --with-tcl-config and --with-tk-config arguments to configure - Set rhome to point to the build root during "make install" * Wed Jan 07 2004 Martyn Plummer - Changed obsolete "copyright" field to "license" * Fri Nov 21 2003 Martyn Plummer - Built 1.8.1