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@ -1,12 +1,14 @@
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Name: R
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Version: 2.5.0
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Release: 2%{?dist}
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Version: 2.7.0
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Release: 5%{?dist}
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Summary: A language for data analysis and graphics
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URL: http://www.r-project.org
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Source0: ftp://cran.r-project.org/pub/R/src/base/R-2/R-%{version}.tar.gz
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License: GPL
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Source1: macros.R
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Source2: R-make-search-index.sh
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Patch0: R-2.7.0-bad-path.patch
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License: GPLv2+
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Group: Applications/Engineering
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Patch0: R-2.5.0-pkgconfig.patch
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BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
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BuildRequires: gcc-gfortran
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BuildRequires: gcc-c++, tetex-latex, texinfo-tex
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@ -15,45 +17,41 @@ BuildRequires: tcl-devel, tk-devel, ncurses-devel
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BuildRequires: blas >= 3.0, pcre-devel, zlib-devel
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BuildRequires: java-1.5.0-gcj, lapack-devel
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BuildRequires: libSM-devel, libX11-devel, libICE-devel, libXt-devel
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# This isn't entirely true, but Martyn Plummer thinks it will be soon.
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BuildRequires: bzip2-devel, libXmu-devel, cairo-devel
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BuildRequires: gcc-objc
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Requires: evince, cups, firefox
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Requires: xdg-utils, cups
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# These are the submodules that R provides. Sometimes R modules say they
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# depend on one of these submodules rather than just R. These are
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# provided for packager convenience.
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Provides: R-base = %{version}
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Provides: R-boot = 1.2
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Provides: R-class = %{version}
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Provides: R-cluster = 1.11.5
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Provides: R-codetools = 0.1
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Provides: R-class = 7.2
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Provides: R-cluster = 1.11.10
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Provides: R-codetools = 0.2
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Provides: R-datasets = %{version}
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Provides: R-foreign = 0.8
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Provides: R-graphics = %{version}
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Provides: R-grDevices = %{version}
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Provides: R-grid = %{version}
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Provides: R-KernSmooth = 2.22
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Provides: R-lattice = 0.15
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Provides: R-MASS = %{version}
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Provides: R-lattice = 0.17
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Provides: R-MASS = 7.2
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Provides: R-methods = %{version}
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Provides: R-mgcv = 1.3
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Provides: R-nlme = 3.1
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Provides: R-nnet = %{version}
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Provides: R-rcompgen = 0.1
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Provides: R-nnet = 7.2
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Provides: R-rpart = 3.1
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Provides: R-spatial = %{version}
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Provides: R-spatial = 7.2
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Provides: R-splines = %{version}
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Provides: R-stats = %{version}
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Provides: R-stats4 = %{version}
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Provides: R-survival = 2.31
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Provides: R-survival = 2.34
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Provides: R-tcltk = %{version}
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Provides: R-tools = %{version}
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Provides: R-utils = %{version}
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Provides: R-VR = 7.2
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# Temporary fix to avoid the SNAFU of the 0.fdr.2.* release
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Conflicts: R-devel < %{version}-%{release}
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%description
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A language and environment for statistical computing and graphics.
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R is similar to the award-winning S system, which was developed at
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@ -71,11 +69,12 @@ and called at run time.
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%package devel
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Summary: files for development of R packages.
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Group: Applications/Engineering
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Requires: R = %{version}
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Requires: R = %{version}-%{release}
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# You need all the BuildRequires for the development version
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Requires: gcc-c++, gcc-gfortran, tetex-latex, texinfo
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Requires: libpng-devel, libjpeg-devel, readline-devel, ncurses-devel
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Requires: libSM-devel, libX11-devel, libICE-devel, libXt-devel
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Requires: bzip2-devel, libXmu-devel, cairo-devel
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Requires: tcl-devel, tk-devel, pkgconfig
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%description devel
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@ -101,22 +100,65 @@ and header files.
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%prep
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%setup -q
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%patch0 -p1
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%patch0 -p0
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# Filter false positive provides.
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cat <<EOF > %{name}-prov
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#!/bin/sh
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%{__perl_provides} \
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| grep -v 'File::Copy::Recursive' | grep -v 'Text::DelimMatch'
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EOF
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%define __perl_provides %{_builddir}/R-%{version}/%{name}-prov
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chmod +x %{__perl_provides}
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# Filter unwanted Requires:
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cat << \EOF > %{name}-req
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#!/bin/sh
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%{__perl_requires} \
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| grep -v 'perl(Text::DelimMatch)'
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EOF
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%define __perl_requires %{_builddir}/R-%{version}/%{name}-req
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chmod +x %{__perl_requires}
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%build
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# Add PATHS to Renviron for R_LIBS
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echo 'R_LIBS=${R_LIBS-'"'%{_libdir}/R/library:%{_datadir}/R/library'"'}' >> etc/Renviron.in
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export R_PDFVIEWER="%{_bindir}/evince"
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export R_PDFVIEWER="%{_bindir}/xdg-open"
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export R_PRINTCMD="lpr"
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export R_BROWSER="%{_bindir}/firefox"
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export F77="gfortran"
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export R_BROWSER="%{_bindir}/xdg-open"
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case "%{_target_cpu}" in
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x86_64|mips64|ppc64|powerpc64|sparc64|s390x)
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export CC="gcc -m64"
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export CXX="g++ -m64"
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export F77="gfortran -m64"
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export FC="gfortran -m64"
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;;
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ia64)
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export CC="gcc"
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export CXX="g++"
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export F77="gfortran"
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export FC="gfortran"
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;;
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*)
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export CC="gcc -m32"
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export CXX="g++ -m32"
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export F77="gfortran -m32"
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export FC="gfortran -m32"
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;;
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esac
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export FCFLAGS="%{optflags}"
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( %configure \
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--with-system-zlib --with-system-bzlib --with-system-pcre \
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--with-lapack \
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--with-tcl-config=%{_libdir}/tclConfig.sh \
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--with-tk-config=%{_libdir}/tkConfig.sh \
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--enable-R-shlib )\
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--enable-R-shlib \
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rdocdir=%{_docdir}/R-%{version} \
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rincludedir=%{_includedir}/R \
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rsharedir=%{_datadir}/R) \
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| grep -A30 'R is now' - > CAPABILITIES
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make
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(cd src/nmath/standalone; make)
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@ -125,67 +167,66 @@ make pdf
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make info
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%install
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%makeinstall rhome=${RPM_BUILD_ROOT}%{_libdir}/R install-info
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make DESTDIR=${RPM_BUILD_ROOT} install install-info install-pdf
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rm -f ${RPM_BUILD_ROOT}%{_infodir}/dir
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rm -f ${RPM_BUILD_ROOT}%{_infodir}/dir.old
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install -p CAPABILITIES ${RPM_BUILD_ROOT}%{_docdir}/R-%{version}
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#Install libRmath files
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(cd src/nmath/standalone; make install \
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includedir=${RPM_BUILD_ROOT}%{_includedir} \
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libdir=${RPM_BUILD_ROOT}%{_libdir})
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#Fix location of R_HOME_DIR in shell wrapper.
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#
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sed -e "s@R_HOME_DIR=.*@R_HOME_DIR=%{_libdir}/R@" < bin/R \
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> ${RPM_BUILD_ROOT}%{_libdir}/R/bin/R
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sed -e "s@R_HOME_DIR=.*@R_HOME_DIR=%{_libdir}/R@" < bin/R \
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> ${RPM_BUILD_ROOT}%{_bindir}/R
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chmod 755 ${RPM_BUILD_ROOT}%{_libdir}/R/bin/R
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chmod 755 ${RPM_BUILD_ROOT}%{_bindir}/R
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# Get rid of buildroot in script
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for i in $RPM_BUILD_ROOT%{_libdir}/R/bin/Rscript $RPM_BUILD_ROOT%{_bindir}/Rscript $RPM_BUILD_ROOT%{_libdir}/pkgconfig/libR*.pc;
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do
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sed -i "s|$RPM_BUILD_ROOT||g" $i;
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done
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# Remove package indices. They are rebuilt by the postinstall script.
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#
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rm -f ${RPM_BUILD_ROOT}%{_libdir}/R/doc/html/function.html
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rm -f ${RPM_BUILD_ROOT}%{_libdir}/R/doc/html/packages.html
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rm -f ${RPM_BUILD_ROOT}%{_libdir}/R/doc/html/search/index.txt
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# Some doc files are also installed. We don't need them
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(cd %{buildroot}%{_libdir}/R;
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rm -f AUTHORS COPYING COPYING.LIB COPYRIGHTS FAQ NEWS ONEWS RESOURCES THANKS)
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(cd src/nmath/standalone; make install DESTDIR=${RPM_BUILD_ROOT})
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mkdir -p $RPM_BUILD_ROOT/etc/ld.so.conf.d
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echo "%{_libdir}/R/lib" > $RPM_BUILD_ROOT/etc/ld.so.conf.d/%{name}-%{_arch}.conf
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mkdir -p $RPM_BUILD_ROOT%{_datadir}/R/library
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# Install rpm helper macros
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mkdir -p $RPM_BUILD_ROOT%{_sysconfdir}/rpm/
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install -m0644 %{SOURCE1} $RPM_BUILD_ROOT%{_sysconfdir}/rpm/
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# Install rpm helper script
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mkdir -p $RPM_BUILD_ROOT/usr/lib/rpm/
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install -m0755 %{SOURCE2} $RPM_BUILD_ROOT/usr/lib/rpm/
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# Fix multilib
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touch -r NEWS ${RPM_BUILD_ROOT}%{_docdir}/R-%{version}/CAPABILITIES
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touch -r NEWS doc/manual/*.pdf
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touch -r NEWS $RPM_BUILD_ROOT%{_bindir}/R
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# Fix html/packages.html
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# We can safely use RHOME here, because all of these are system packages.
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sed -i 's|\..\/\..|%{_libdir}/R|g' $RPM_BUILD_ROOT%{_docdir}/R-%{version}/html/packages.html
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for i in $RPM_BUILD_ROOT%{_libdir}/R/library/*/html/*.html; do
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sed -i 's|\..\/\..\/..\/doc|%{_docdir}/R-%{version}|g' $i
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done
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%files
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%defattr(-, root, root)
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%{_bindir}/R
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%{_bindir}/Rscript
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%{_datadir}/R
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%{_libdir}/R
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%dir %{_libdir}/R
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%{_libdir}/R/bin
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%{_libdir}/R/etc
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%{_libdir}/R/lib
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%{_libdir}/R/library
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%{_libdir}/R/modules
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%{_libdir}/R/COPYING
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%{_libdir}/R/NEWS
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%{_libdir}/R/SVN-REVISION
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/usr/lib/rpm/R-make-search-index.sh
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%{_infodir}/R-*.info*
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%{_sysconfdir}/rpm/macros.R
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%{_mandir}/man1/*
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%{_docdir}/R-%{version}
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%docdir %{_docdir}/R-%{version}
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/etc/ld.so.conf.d/*
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%doc doc/AUTHORS CAPABILITIES doc/COPYING doc/COPYING.LIB doc/COPYRIGHTS doc/FAQ NEWS
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%doc ONEWS README doc/RESOURCES doc/THANKS VERSION
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%doc doc/manual/R-admin.pdf
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%doc doc/manual/R-FAQ.pdf
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%doc doc/manual/R-lang.pdf
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%doc doc/manual/R-data.pdf
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%doc doc/manual/R-intro.pdf
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%files devel
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%defattr(-, root, root)
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%doc doc/manual/R-exts.pdf
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%{_libdir}/pkgconfig/libR.pc
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%{_includedir}/R
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%files -n libRmath
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%defattr(-, root, root)
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@ -210,10 +251,18 @@ for doc in admin exts FAQ intro lang; do
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fi
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done
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/sbin/ldconfig
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R CMD javareconf > /dev/null 2>&1 || exit 0
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# Update package indices
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%{_bindir}/R CMD perl %{_libdir}/R/share/perl/build-help.pl --htmllists > /dev/null 2>/dev/null
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%__cat %{_libdir}/R/library/*/CONTENTS > %{_libdir}/R/doc/html/search/index.txt 2>/dev/null
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%__cat %{_libdir}/R/library/*/CONTENTS > %{_docdir}/R-%{version}/html/search/index.txt 2>/dev/null
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# Don't use .. based paths, substitute RHOME
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sed -i "s!../../..!%{_libdir}/R!g" %{_docdir}/R-%{version}/html/search/index.txt
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# This could fail if there are no noarch R libraries on the system.
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%__cat %{_datadir}/R/library/*/CONTENTS >> %{_docdir}/R-%{version}/html/search/index.txt 2>/dev/null || exit 0
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# Don't use .. based paths, substitute /usr/share/R
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sed -i "s!../../..!/usr/share/R!g" %{_docdir}/R-%{version}/html/search/index.txt
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%preun
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if [ $1 = 0 ]; then
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@ -224,10 +273,6 @@ if [ $1 = 0 ]; then
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/sbin/install-info --delete R-${doc} %{_infodir}/dir 2>/dev/null || :
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fi
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done
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# Remove package indices
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%__rm -f %{_libdir}/R/doc/html/function.html
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%__rm -f %{_libdir}/R/doc/html/packages.html
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%__rm -f %{_libdir}/R/doc/html/search/index.txt
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fi
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%postun
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@ -240,6 +285,76 @@ fi
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/sbin/ldconfig
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%changelog
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* Wed May 28 2008 Tom "spot" Callaway <tcallawa@redhat.com> 2.7.0-5
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- add cairo-devel to BR/R, so that cairo backend gets built
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* Wed May 21 2008 Tom "spot" Callaway <tcallawa@redhat.com> 2.7.0-4
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- fixup sed invocation added in -3
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- make -devel package depend on base R = version-release
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- fix bad paths in package html files
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* Wed May 21 2008 Tom "spot" Callaway <tcallawa@redhat.com> 2.7.0-3
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- fix poorly constructed file paths in html/packages.html (bz 442727)
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* Tue May 13 2008 Tom "spot" Callaway <tcallawa@redhat.com> 2.7.0-2
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- add patch from Martyn Plummer to avoid possible bad path hardcoding in
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/usr/bin/Rscript
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- properly handle ia64 case (bz 446181)
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* Mon Apr 28 2008 Tom "spot" Callaway <tcallawa@redhat.com> 2.7.0-1
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- update to 2.70
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- rcompgen is no longer a standalone package
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- redirect javareconf to /dev/null (bz 442366)
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* Fri Feb 8 2008 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.2-1
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- properly version the items in the VR bundle
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- 2.6.2
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- don't use setarch for java setup
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- fix R post script file
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* Thu Jan 31 2008 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.1-4
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- multilib handling (thanks Martyn Plummer)
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- Update indices in the right place.
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* Mon Jan 7 2008 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.1-3
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|
- move INSTALL back into R main package, as it is useful without the
|
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|
other -devel bits (e.g. installing noarch package from CRAN)
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* Tue Dec 11 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.1-2
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|
- based on changes from Martyn Plummer <martyn.plummer@r-project.org>
|
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|
|
- use configure options rdocdir, rincludedir, rsharedir
|
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|
|
- use DESTDIR at installation
|
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|
|
- remove obsolete generation of packages.html
|
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|
|
- move header files and INSTALL R-devel package
|
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|
* Mon Nov 26 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.1-1
|
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|
|
- bump to 2.6.1
|
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* Tue Oct 30 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.0-3.1
|
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|
|
- fix missing perl requires
|
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* Mon Oct 29 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.0-3
|
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|
|
- fix multilib conflicts (bz 343061)
|
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|
|
* Mon Oct 29 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.0-2
|
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|
|
- add R CMD javareconf to post (bz 354541)
|
|
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|
|
- don't pickup bogus perl provides (bz 356071)
|
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|
|
- use xdg-open, drop requires for firefox/evince (bz 351841)
|
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|
|
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|
|
* Thu Oct 4 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.6.0-1
|
|
|
|
|
- bump to 2.6.0
|
|
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|
|
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|
|
* Sun Aug 26 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.5.1-3
|
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|
|
- fix license tag
|
|
|
|
|
- rebuild for ppc32
|
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|
|
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|
|
* Thu Jul 5 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.5.1-2
|
|
|
|
|
- add rpm helper macros, script
|
|
|
|
|
|
|
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|
|
* Mon Jul 2 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.5.1-1
|
|
|
|
|
- drop patch, upstream fixed
|
|
|
|
|
- bump to 2.5.1
|
|
|
|
|
|
|
|
|
|
* Mon Apr 30 2007 Tom "spot" Callaway <tcallawa@redhat.com> 2.5.0-2
|
|
|
|
|
- patch from Martyn Plummer fixes .pc files
|
|
|
|
|
- add new BR: gcc-objc
|
|
|
|
|
|
Fedora Release Engineering
Bill Nottingham
Tom Callaway