Merge branch 'master' into el5
This commit is contained in:
Tom Callaway
commit
6848961498
143
R.spec
143
R.spec
@ -41,6 +41,18 @@
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%global modern 1
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%endif
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# R really wants zlib 1.2.5, bzip2 1.0.6, xz 5.0.3, curl 7.28, and pcre 8.10+
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# These are too new for RHEL 5/6. HACKITY HACK TIME.
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%global zlibhack 0
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%if 0%{?rhel} == 5
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%global zlibhack 1
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%endif
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%if 0%{?rhel} == 6
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%global zlibhack 1
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%endif
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# RHEL 6 ppc64 doesn't have icu. Everyone else modern does.
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%if %{modern}
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@ -70,7 +82,7 @@
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Name: R
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Version: 3.3.0
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Release: 2%{?dist}
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Release: 3%{?dist}
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Summary: A language for data analysis and graphics
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URL: http://www.r-project.org
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Source0: ftp://cran.r-project.org/pub/R/src/base/R-3/R-%{version}.tar.gz
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@ -90,6 +102,32 @@ Source104: https://cran.r-project.org/doc/manuals/r-release/R-lang.html
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Source105: https://cran.r-project.org/doc/manuals/r-release/R-ints.html
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Source106: https://cran.r-project.org/doc/FAQ/R-FAQ.html
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%endif
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%if %{zlibhack}
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%global zlibv 1.2.8
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%global bzipv 1.0.6
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%global xzv 5.2.2
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%global pcrev 8.38
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%global curlv 7.48.0
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Source1000: http://zlib.net/zlib-%{zlibv}.tar.gz
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Source1001: http://www.bzip.org/1.0.6/bzip2-%{bzipv}.tar.gz
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Source1002: http://tukaani.org/xz/xz-%{xzv}.tar.bz2
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Source1003: ftp://ftp.csx.cam.ac.uk/pub/software/programming/pcre/pcre-%{pcrev}.tar.bz2
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Source1004: https://curl.haxx.se/download/curl-%{curlv}.tar.bz2
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BuildRequires: glibc-devel
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BuildRequires: groff
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BuildRequires: krb5-devel
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BuildRequires: libidn-devel
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BuildRequires: libmetalink-devel
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BuildRequires: libssh2-devel
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BuildRequires: nss-devel
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BuildRequires: openldap-devel
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BuildRequires: openssl-devel
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BuildRequires: openssh-clients
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BuildRequires: openssh-server
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BuildRequires: pkgconfig
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BuildRequires: python
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BuildRequires: stunnel
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%endif
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Patch0: 0001-Disable-backing-store-in-X11-window.patch
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# see https://bugzilla.redhat.com/show_bug.cgi?id=1324145
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Patch1: R-3.3.0-fix-java_path-in-javareconf.patch
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@ -103,8 +141,9 @@ BuildRequires: tcl-devel, tk-devel, ncurses-devel
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BuildRequires: pcre-devel, zlib-devel
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%if 0%{?rhel}
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# RHEL older than 6
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%if 0%{?rhel} < 6
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BuildRequires: curl-devel
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%if 0%{?rhel} < 7
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# RHEL 5 used to use curl-devel, but it is now too old.
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#BuildRequires: curl-devel
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# RHEL newer than 6
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%else
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BuildRequires: libcurl-devel
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@ -250,7 +289,8 @@ Requires: R-core = %{version}-%{release}
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Requires: gcc-c++, gcc-gfortran, tex(latex), texinfo-tex
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Requires: bzip2-devel, libX11-devel, pcre-devel, zlib-devel
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Requires: tcl-devel, tk-devel, pkgconfig, xz-devel
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Requires: blas-devel >= 3.0, lapack-devel
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# No longer true.
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# Requires: blas-devel >= 3.0, lapack-devel
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%if %{modern}
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Requires: libicu-devel
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%endif
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@ -367,7 +407,11 @@ A standalone library of mathematical and statistical functions derived
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from the R project. This package provides the static libRmath library.
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%prep
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%if %{zlibhack}
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%setup -q -n %{name}-%{version} -a 1000 -a 1001 -a 1002 -a 1003 -a 1004
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%else
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%setup -q -n %{name}-%{version}
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%endif
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%patch0 -p1 -b .disable-backing-store
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%patch1 -p1 -b .fixpath
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@ -391,6 +435,43 @@ EOF
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chmod +x %{__perl_requires}
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%build
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# If you're seeing this, I'm sorry. This is ugly.
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# But short of updating RHEL 5/6 (which isn't happening), this is the best worst way to keep R working.
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%if %{zlibhack}
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pushd zlib-%{zlibv}
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./configure --libdir=%{_libdir} --includedir=%{_includedir} --prefix=%{_prefix} --static
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make %{?_smp_mflags} CFLAGS='%{optflags} -fpic -fPIC'
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mkdir -p target
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make DESTDIR=./target install
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popd
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pushd bzip2-%{bzipv}
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make %{?_smp_mflags} libbz2.a CC="%{__cc}" AR="%{__ar}" RANLIB="%{__ranlib}" CFLAGS="$RPM_OPT_FLAGS -D_FILE_OFFSET_BITS=64 -fpic -fPIC" LDFLAGS="%{__global_ldflags}"
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mkdir -p target%{_libdir}
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mkdir -p target%{_includedir}
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cp -p bzlib.h target%{_includedir}
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install -m 644 libbz2.a target%{_libdir}
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popd
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pushd xz-%{xzv}
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CFLAGS="%{optflags} -fpic -fPIC" %configure --enable-static=yes --enable-shared=no
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make %{?_smp_mflags}
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mkdir -p target
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make DESTDIR=%{_builddir}/%{name}-%{version}/xz-%{xzv}/target install
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popd
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pushd pcre-%{pcrev}
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CFLAGS="%{optflags} -fpic -fPIC" %configure --enable-static=yes --enable-shared=no --enable-utf --enable-unicode-properties --enable-pcre8 --enable-pcre16 --enable-pcre32
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make %{?_smp_mflags}
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mkdir -p target
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make DESTDIR=%{_builddir}/%{name}-%{version}/pcre-%{pcrev}/target install
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popd
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pushd curl-%{curlv}
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CFLAGS="%{optflags} -fpic -fPIC" %configure --enable-static=yes --enable-shared=no --without-ssl --with-nss --enable-ipv6 --with-ca-bundle=%{_sysconfdir}/pki/tls/certs/ca-bundle.crt --with-gssapi --with-libidn --enable-ldaps --with-libssh2 --enable-threaded-resolver --with-libmetalink
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make %{?_smp_mflags} V=1
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mkdir -p target
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make DESTDIR=%{_builddir}/%{name}-%{version}/curl-%{curlv}/target INSTALL="install -p" install
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popd
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%endif
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# Add PATHS to Renviron for R_LIBS_SITE
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echo 'R_LIBS_SITE=${R_LIBS_SITE-'"'/usr/local/lib/R/site-library:/usr/local/lib/R/library:%{_libdir}/R/library:%{_datadir}/R/library'"'}' >> etc/Renviron.in
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# No inconsolata on RHEL tex
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@ -429,6 +510,14 @@ case "%{_target_cpu}" in
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;;
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esac
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%if 0%{?zlibhack}
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export CFLAGS="%{optflags} -fpic -fPIC -I%{_builddir}/%{name}-%{version}/zlib-%{zlibv}/target%{_includedir} -I%{_builddir}/%{name}-%{version}/bzip2-%{bzipv}/target%{_includedir} -I%{_builddir}/%{name}-%{version}/xz-%{xzv}/target%{_includedir} -I%{_builddir}/%{name}-%{version}/pcre-%{pcrev}/target%{_includedir} -I%{_builddir}/%{name}-%{version}/curl-%{curlv}/target%{_includedir}"
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# export LDFLAGS="-L%{_builddir}/%{name}-%{version}/zlib-%{zlibv}/target%{_libdir}/ -L%{_builddir}/%{name}-%{version}/bzip2-%{bzipv}/target%{_libdir}/ -L%{_builddir}/%{name}-%{version}/xz-%{xzv}/target%{_libdir}/ -L%{_builddir}/%{name}-%{version}/pcre-%{pcrev}/target%{_libdir}/ -L%{_builddir}/%{name}-%{version}/curl-%{curlv}/target%{_libdir}/"
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export CURL_CFLAGS='-DCURL_STATICLIB -I%{_builddir}/%{name}-%{version}/curl-%{curlv}/target%{_includedir}'
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export CURL_LIBS=`%{_builddir}/%{name}-%{version}/curl-%{curlv}/target/usr/bin/curl-config --libs`
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export LDFLAGS="-ldl -lpthread -lc -lrt -Wl,--whole-archive %{_builddir}/%{name}-%{version}/zlib-%{zlibv}/target%{_libdir}/libz.a %{_builddir}/%{name}-%{version}/bzip2-%{bzipv}/target%{_libdir}/libbz2.a %{_builddir}/%{name}-%{version}/xz-%{xzv}/target%{_libdir}/liblzma.a %{_builddir}/%{name}-%{version}/pcre-%{pcrev}/target%{_libdir}/libpcre.a %{_builddir}/%{name}-%{version}/curl-%{curlv}/target%{_libdir}/libcurl.a -Wl,--no-whole-archive -L%{_builddir}/%{name}-%{version}/curl-%{curlv}/target%{_libdir}/ $CURL_LIBS"
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%endif
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%if 0%{?fedora} >= 21
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%if %{with_lto}
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# With gcc 4.9, if we don't pass -ffat-lto-objects along with -flto, Matrix builds without the needed object code
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@ -478,7 +567,11 @@ export FCFLAGS="%{optflags}"
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rsharedir=%{_datadir}/R) \
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> CONFIGURE.log
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cat CONFIGURE.log | grep -A30 'R is now' - > CAPABILITIES
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make
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%if 0%{?zlibhack}
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make V=1 CURL_CPPFLAGS='-DCURL_STATICLIB -I%{_builddir}/%{name}-%{version}/curl-%{curlv}/target%{_includedir}' CURL_LIBS=`%{_builddir}/%{name}-%{version}/curl-%{curlv}/target/usr/bin/curl-config --libs`
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%else
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make V=1
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%endif
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(cd src/nmath/standalone; make)
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#make check-all
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make pdf
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@ -509,7 +602,11 @@ make DESTDIR=${RPM_BUILD_ROOT} install install-info
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mv doc/manual/R-exts.texi.spot doc/manual/R-exts.texi
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mv doc/manual/R-intro.texi.spot doc/manual/R-intro.texi
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%endif
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%if 0%{?zlibhack}
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# Ugh. Old ancient broken. Barf barf barf.
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%else
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make DESTDIR=${RPM_BUILD_ROOT} install-pdf
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%endif
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rm -f ${RPM_BUILD_ROOT}%{_infodir}/dir
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rm -f ${RPM_BUILD_ROOT}%{_infodir}/dir.old
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@ -549,16 +646,21 @@ done
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chmod +x $RPM_BUILD_ROOT%{_datadir}/R/sh/echo.sh
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chmod -x $RPM_BUILD_ROOT%{_libdir}/R/library/mgcv/CITATION ${RPM_BUILD_ROOT}%{?_pkgdocdir}%{!?_pkgdocdir:%{_docdir}/%{name}-%{version}}/CAPABILITIES
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# Symbolic link for convenience
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pushd $RPM_BUILD_ROOT%{_libdir}/R
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ln -s ../../include/R include
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popd
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if [ ! -d "$RPM_BUILD_ROOT%{_libdir}/R/include" ]; then
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pushd $RPM_BUILD_ROOT%{_libdir}/R
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ln -s ../../include/R include
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popd
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fi
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# Symbolic link for LaTeX
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mkdir -p $RPM_BUILD_ROOT%{_datadir}/texmf/tex/latex
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pushd $RPM_BUILD_ROOT%{_datadir}/texmf/tex/latex
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ln -s ../../../R/texmf/tex/latex R
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popd
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if [ ! -d "$RPM_BUILD_ROOT%{_datadir}/texmf/tex/latex/R" ]; then
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mkdir -p $RPM_BUILD_ROOT%{_datadir}/texmf/tex/latex
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pushd $RPM_BUILD_ROOT%{_datadir}/texmf/tex/latex
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ln -s ../../../R/texmf/tex/latex R
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popd
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fi
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%if %{texi2any}
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# Do not need to copy files...
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@ -567,10 +669,21 @@ popd
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cp -a %{SOURCE100} %{SOURCE101} %{SOURCE102} %{SOURCE103} %{SOURCE104} %{SOURCE105} %{SOURCE106} %{buildroot}%{?_pkgdocdir}%{!?_pkgdocdir:%{_docdir}/%{name}-%{version}}/manual/
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%endif
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%if 0%{?zlibhack}
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# Clean our shameful shame out of the files.
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sed -i 's|-Wl,--whole-archive %{_builddir}/%{name}-%{version}/zlib-%{zlibv}/target%{_libdir}/libz.a %{_builddir}/%{name}-%{version}/bzip2-%{bzipv}/target%{_libdir}/libbz2.a %{_builddir}/%{name}-%{version}/xz-%{xzv}/target%{_libdir}/liblzma.a %{_builddir}/%{name}-%{version}/pcre-%{pcrev}/target%{_libdir}/libpcre.a %{_builddir}/%{name}-%{version}/curl-%{curlv}/target%{_libdir}/libcurl.a -Wl,--no-whole-archive -L%{_builddir}/%{name}-%{version}/curl-%{curlv}/target%{_libdir}/||g' %{buildroot}%{_libdir}/R/etc/Makeconf
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sed -i 's|-Wl,--whole-archive %{_builddir}/%{name}-%{version}/zlib-%{zlibv}/target%{_libdir}/libz.a %{_builddir}/%{name}-%{version}/bzip2-%{bzipv}/target%{_libdir}/libbz2.a %{_builddir}/%{name}-%{version}/xz-%{xzv}/target%{_libdir}/liblzma.a %{_builddir}/%{name}-%{version}/pcre-%{pcrev}/target%{_libdir}/libpcre.a %{_builddir}/%{name}-%{version}/curl-%{curlv}/target%{_libdir}/libcurl.a -Wl,--no-whole-archive -L%{_builddir}/%{name}-%{version}/curl-%{curlv}/target%{_libdir}/||g' %{buildroot}%{_libdir}/pkgconfig/libR.pc
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sed -i 's|-I%{_builddir}/%{name}-%{version}/zlib-%{zlibv}/target%{_includedir} -I%{_builddir}/%{name}-%{version}/bzip2-%{bzipv}/target%{_includedir} -I%{_builddir}/%{name}-%{version}/xz-%{xzv}/target%{_includedir} -I%{_builddir}/%{name}-%{version}/pcre-%{pcrev}/target%{_includedir} -I%{_builddir}/%{name}-%{version}/curl-%{curlv}/target%{_includedir}||g' %{buildroot}%{_libdir}/R/etc/Makeconf
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%endif
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%check
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%if 0%{?zlibhack}
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# Most of these tests pass. Some don't. All pieces belong to you.
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%else
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# Needed by tests/ok-error.R, which will smash the stack on PPC64. This is the purpose of the test.
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ulimit -s 16384
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make check
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%endif
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%files
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# Metapackage
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@ -1010,6 +1123,12 @@ R CMD javareconf \
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%postun -n libRmath -p /sbin/ldconfig
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%changelog
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* Fri May 13 2016 Tom Callaway <spot@fedoraproject.org> - 3.3.0-3
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- we no longer need Requires: blas-devel, lapack-devel for R-core-devel
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* Wed May 11 2016 Tom Callaway <spot@fedoraproject.org> - 3.3.0-2.1
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- implement "zlibhack" to build R against bundled bits too old in RHEL 5 & 6
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|
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* Tue May 10 2016 Tom Callaway <spot@fedoraproject.org> - 3.3.0-2
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- RHEL 6 ppc64 doesn't have libicu-devel. :P
|
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|
||||
|
||||
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