From 26ea86edbfc0580acc69e03f2698e34f9369e3cd Mon Sep 17 00:00:00 2001
From: Elliott Sales de Andrade <quantum.analyst@gmail.com>
Date: Tue, 27 Mar 2018 19:33:43 -0400
Subject: [PATCH] Initial import (#1559738).

---
 .gitignore |  1 +
 R-ape.spec | 82 ++++++++++++++++++++++++++++++++++++++++++++++++++++++
 README.md  |  3 --
 sources    |  1 +
 4 files changed, 84 insertions(+), 3 deletions(-)
 create mode 100644 .gitignore
 create mode 100644 R-ape.spec
 delete mode 100644 README.md
 create mode 100644 sources

diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..9e8aebc
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1 @@
+/ape_5.0.tar.gz
diff --git a/R-ape.spec b/R-ape.spec
new file mode 100644
index 0000000..f03dc49
--- /dev/null
+++ b/R-ape.spec
@@ -0,0 +1,82 @@
+%global packname  ape
+%global rlibdir  %{_libdir}/R/library
+
+
+Name:             R-%{packname}
+Version:          5.0
+Release:          1%{?dist}
+Summary:          Analyses of Phylogenetics and Evolution
+
+License:          GPLv2+
+URL:              https://cran.r-project.org/web/packages/%{packname}/index.html
+Source0:          https://cran.r-project.org/src/contrib/%{packname}_%{version}.tar.gz
+
+# Here's the R view of the dependencies world:
+# Depends:
+# Imports:   R-nlme R-lattice R-graphics R-methods R-stats R-tools R-utils R-parallel R-Rcpp
+# Suggests:  R-gee R-expm
+# LinkingTo:
+# Enhances:
+
+Requires:         R-nlme R-lattice R-graphics R-methods R-stats R-tools R-utils R-parallel R-Rcpp
+Suggests:         R-gee R-expm
+BuildRequires:    R-devel tex(latex)
+BuildRequires:    R-nlme R-lattice R-graphics R-methods R-stats R-tools R-utils R-parallel R-Rcpp-devel
+BuildRequires:    R-gee R-expm
+
+%description
+Functions for reading, writing, plotting, and manipulating phylogenetic
+trees, analyses of comparative data in a phylogenetic framework, ancestral
+character analyses, analyses of diversification and macroevolution,
+computing distances from DNA sequences, reading and writing nucleotide
+sequences as well as importing from BioConductor, and several tools such
+as Mantel's test, generalized skyline plots, graphical exploration of
+phylogenetic data (alex, trex, kronoviz), estimation of absolute
+evolutionary rates and clock-like trees using mean path lengths and
+penalized likelihood, dating trees with non-contemporaneous sequences,
+translating DNA into AA sequences, and assessing sequence alignments.
+Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and
+triangle methods, and several methods handling incomplete distance
+matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some
+functions call external applications (PhyML, Clustal, T-Coffee, Muscle)
+whose results are returned into R.
+
+
+%prep
+%setup -q -c -n %{packname}
+
+
+%build
+
+
+%install
+mkdir -p %{buildroot}%{rlibdir}
+%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -f %{buildroot}%{rlibdir}/R.css
+
+
+%check
+%{_bindir}/R CMD check %{packname}
+
+
+%files
+%dir %{rlibdir}/%{packname}
+%doc %{rlibdir}/%{packname}/doc
+%doc %{rlibdir}/%{packname}/html
+%{rlibdir}/%{packname}/DESCRIPTION
+%doc %{rlibdir}/%{packname}/CITATION
+%doc %{rlibdir}/%{packname}/NEWS
+%{rlibdir}/%{packname}/INDEX
+%{rlibdir}/%{packname}/NAMESPACE
+%{rlibdir}/%{packname}/Meta
+%{rlibdir}/%{packname}/R
+%{rlibdir}/%{packname}/help
+%dir %{rlibdir}/%{packname}/libs
+%{rlibdir}/%{packname}/libs/%{packname}.so
+%{rlibdir}/%{packname}/data
+
+
+%changelog
+* Fri Mar 23 2018 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 5.0-1
+- initial package for Fedora
diff --git a/README.md b/README.md
deleted file mode 100644
index 891d566..0000000
--- a/README.md
+++ /dev/null
@@ -1,3 +0,0 @@
-# R-ape
-
-The R-ape package
\ No newline at end of file
diff --git a/sources b/sources
new file mode 100644
index 0000000..cb0b670
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+SHA512 (ape_5.0.tar.gz) = ea67c3be6206e9efc17065bfa8db7afd98bf7d309cb952a9285377d425afee5d6a94bceabf10a29ad94fc74eb2b1210447b93ef41b957814b05056d806a65b60