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Update to latest version.

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Elliott Sales de Andrade 2020-07-24 20:33:51 -04:00
parent faf19fcead
commit 07d5496991
3 changed files with 16 additions and 11 deletions
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1
.gitignore vendored
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@ -2,3 +2,4 @@
/ape_5.1.tar.gz /ape_5.1.tar.gz
/ape_5.2.tar.gz /ape_5.2.tar.gz
/ape_5.3.tar.gz /ape_5.3.tar.gz
/ape_5.4.tar.gz

22
R-ape.spec
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%global packname ape %global packname ape
%global packver 5.4
%global rlibdir %{_libdir}/R/library %global rlibdir %{_libdir}/R/library
%bcond_with bootstrap %bcond_with bootstrap
Name: R-%{packname} Name: R-%{packname}
Version: 5.3 Version: 5.4
Release: 7%{?dist} Release: 1%{?dist}
Summary: Analyses of Phylogenetics and Evolution Summary: Analyses of Phylogenetics and Evolution
License: GPLv2+ License: GPLv2+
URL: https://CRAN.R-project.org/package=%{packname} URL: https://CRAN.R-project.org/package=%{packname}
Source0: https://cran.r-project.org/src/contrib/%{packname}_%{version}.tar.gz Source0: https://cran.r-project.org/src/contrib/%{packname}_%{packver}.tar.gz
# Here's the R view of the dependencies world: # Here's the R view of the dependencies world:
# Depends: # Depends:
@ -41,17 +42,17 @@ Functions for reading, writing, plotting, and manipulating phylogenetic
trees, analyses of comparative data in a phylogenetic framework, ancestral trees, analyses of comparative data in a phylogenetic framework, ancestral
character analyses, analyses of diversification and macroevolution, character analyses, analyses of diversification and macroevolution,
computing distances from DNA sequences, reading and writing nucleotide computing distances from DNA sequences, reading and writing nucleotide
sequences as well as importing from BioConductor, and several tools such sequences as well as importing from BioConductor, and several tools such as
as Mantel's test, generalized skyline plots, graphical exploration of Mantel's test, generalized skyline plots, graphical exploration of
phylogenetic data (alex, trex, kronoviz), estimation of absolute phylogenetic data (alex, trex, kronoviz), estimation of absolute
evolutionary rates and clock-like trees using mean path lengths and evolutionary rates and clock-like trees using mean path lengths and
penalized likelihood, dating trees with non-contemporaneous sequences, penalized likelihood, dating trees with non-contemporaneous sequences,
translating DNA into AA sequences, and assessing sequence alignments. translating DNA into AA sequences, and assessing sequence alignments.
Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and
triangle methods, and several methods handling incomplete distance triangle methods, and several methods handling incomplete distance matrices
matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call
functions call external applications (PhyML, Clustal, T-Coffee, Muscle) external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are
whose results are returned into R. returned into R.
%prep %prep
@ -94,6 +95,9 @@ _R_CHECK_FORCE_SUGGESTS_=0 %{_bindir}/R CMD check %{packname} --no-examples
%changelog %changelog
* Tue Jul 21 2020 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 5.4-1
- Update to latest version
* Fri Jun 5 2020 Tom Callaway <spot@fedoraproject.org> - 5.3-7 * Fri Jun 5 2020 Tom Callaway <spot@fedoraproject.org> - 5.3-7
- rebuild for R 4 - rebuild for R 4
- turnoff bootstrap - turnoff bootstrap

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sources
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SHA512 (ape_5.3.tar.gz) = 82264880c07597880b91ebb94110dcb8c85581fb97f8e8c478075eddbd6490b92488df43a0f3e7b505e8249758c54feeaf5103669c32ce898ff1eff9e22a68cd SHA512 (ape_5.4.tar.gz) = b6f6500319a313b9a3cb60ae7018016a192f6b41e19dc766e4306985b01b83c9f478c357cf50fe1c6c13d0b1c818b7f3af913d69e86f374bfacbb4891439ae3d