From 07d549699129f0f96654617f7cd73178a3b53643 Mon Sep 17 00:00:00 2001 From: Elliott Sales de Andrade Date: Fri, 24 Jul 2020 20:33:51 -0400 Subject: [PATCH] Update to latest version. --- .gitignore | 1 + R-ape.spec | 24 ++++++++++++++---------- sources | 2 +- 3 files changed, 16 insertions(+), 11 deletions(-) diff --git a/.gitignore b/.gitignore index 311a4f6..7e35bbf 100644 --- a/.gitignore +++ b/.gitignore @@ -2,3 +2,4 @@ /ape_5.1.tar.gz /ape_5.2.tar.gz /ape_5.3.tar.gz +/ape_5.4.tar.gz diff --git a/R-ape.spec b/R-ape.spec index b0bdf91..ecc7960 100644 --- a/R-ape.spec +++ b/R-ape.spec @@ -1,16 +1,17 @@ -%global packname ape +%global packname ape +%global packver 5.4 %global rlibdir %{_libdir}/R/library %bcond_with bootstrap Name: R-%{packname} -Version: 5.3 -Release: 7%{?dist} +Version: 5.4 +Release: 1%{?dist} Summary: Analyses of Phylogenetics and Evolution License: GPLv2+ URL: https://CRAN.R-project.org/package=%{packname} -Source0: https://cran.r-project.org/src/contrib/%{packname}_%{version}.tar.gz +Source0: https://cran.r-project.org/src/contrib/%{packname}_%{packver}.tar.gz # Here's the R view of the dependencies world: # Depends: @@ -41,17 +42,17 @@ Functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide -sequences as well as importing from BioConductor, and several tools such -as Mantel's test, generalized skyline plots, graphical exploration of +sequences as well as importing from BioConductor, and several tools such as +Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and -triangle methods, and several methods handling incomplete distance -matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some -functions call external applications (PhyML, Clustal, T-Coffee, Muscle) -whose results are returned into R. +triangle methods, and several methods handling incomplete distance matrices +(NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call +external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are +returned into R. %prep @@ -94,6 +95,9 @@ _R_CHECK_FORCE_SUGGESTS_=0 %{_bindir}/R CMD check %{packname} --no-examples %changelog +* Tue Jul 21 2020 Elliott Sales de Andrade - 5.4-1 +- Update to latest version + * Fri Jun 5 2020 Tom Callaway - 5.3-7 - rebuild for R 4 - turnoff bootstrap diff --git a/sources b/sources index 62da01d..7d5faff 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -SHA512 (ape_5.3.tar.gz) = 82264880c07597880b91ebb94110dcb8c85581fb97f8e8c478075eddbd6490b92488df43a0f3e7b505e8249758c54feeaf5103669c32ce898ff1eff9e22a68cd +SHA512 (ape_5.4.tar.gz) = b6f6500319a313b9a3cb60ae7018016a192f6b41e19dc766e4306985b01b83c9f478c357cf50fe1c6c13d0b1c818b7f3af913d69e86f374bfacbb4891439ae3d