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Update to latest version.

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Elliott Sales de Andrade 2020-07-24 20:33:51 -04:00
parent faf19fcead
commit 07d5496991
3 changed files with 16 additions and 11 deletions
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1
.gitignore vendored
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@ -2,3 +2,4 @@
/ape_5.1.tar.gz
/ape_5.2.tar.gz
/ape_5.3.tar.gz
/ape_5.4.tar.gz

24
R-ape.spec
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@ -1,16 +1,17 @@
%global packname ape
%global packname ape
%global packver 5.4
%global rlibdir %{_libdir}/R/library
%bcond_with bootstrap
Name: R-%{packname}
Version: 5.3
Release: 7%{?dist}
Version: 5.4
Release: 1%{?dist}
Summary: Analyses of Phylogenetics and Evolution
License: GPLv2+
URL: https://CRAN.R-project.org/package=%{packname}
Source0: https://cran.r-project.org/src/contrib/%{packname}_%{version}.tar.gz
Source0: https://cran.r-project.org/src/contrib/%{packname}_%{packver}.tar.gz
# Here's the R view of the dependencies world:
# Depends:
@ -41,17 +42,17 @@ Functions for reading, writing, plotting, and manipulating phylogenetic
trees, analyses of comparative data in a phylogenetic framework, ancestral
character analyses, analyses of diversification and macroevolution,
computing distances from DNA sequences, reading and writing nucleotide
sequences as well as importing from BioConductor, and several tools such
as Mantel's test, generalized skyline plots, graphical exploration of
sequences as well as importing from BioConductor, and several tools such as
Mantel's test, generalized skyline plots, graphical exploration of
phylogenetic data (alex, trex, kronoviz), estimation of absolute
evolutionary rates and clock-like trees using mean path lengths and
penalized likelihood, dating trees with non-contemporaneous sequences,
translating DNA into AA sequences, and assessing sequence alignments.
Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and
triangle methods, and several methods handling incomplete distance
matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some
functions call external applications (PhyML, Clustal, T-Coffee, Muscle)
whose results are returned into R.
triangle methods, and several methods handling incomplete distance matrices
(NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call
external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are
returned into R.
%prep
@ -94,6 +95,9 @@ _R_CHECK_FORCE_SUGGESTS_=0 %{_bindir}/R CMD check %{packname} --no-examples
%changelog
* Tue Jul 21 2020 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 5.4-1
- Update to latest version
* Fri Jun 5 2020 Tom Callaway <spot@fedoraproject.org> - 5.3-7
- rebuild for R 4
- turnoff bootstrap

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sources
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SHA512 (ape_5.3.tar.gz) = 82264880c07597880b91ebb94110dcb8c85581fb97f8e8c478075eddbd6490b92488df43a0f3e7b505e8249758c54feeaf5103669c32ce898ff1eff9e22a68cd
SHA512 (ape_5.4.tar.gz) = b6f6500319a313b9a3cb60ae7018016a192f6b41e19dc766e4306985b01b83c9f478c357cf50fe1c6c13d0b1c818b7f3af913d69e86f374bfacbb4891439ae3d