dist-git conversion

#2781)

.gitignore

@@ -1,15 +1 @@
-affyio_1.16.0.tar.gz
-/affyio_1.18.0.tar.gz
-/affyio_1.20.0.tar.gz
-/affyio_1.22.0.tar.gz
-/affyio_1.26.0.tar.gz
-/affyio_1.28.0.tar.gz
-/affyio_1.30.0.tar.gz
-/affyio_1.32.0.tar.gz
-/affyio_1.46.0.tar.gz
-/affyio_1.50.0.tar.gz
-/affyio_1.56.0.tar.gz
-/affyio_1.58.0.tar.gz
-/affyio_1.60.0.tar.gz
-/affyio_1.62.0.tar.gz
-/affyio_1.66.0.tar.gz
+affyio_1.8.0.tar.gz

R-affyio.spec

@@ -1,16 +1,22 @@
 %define packname  affyio
-%define Rversion  3.4.0
+%define bioc      2.3
+%define Rversion  2.8.0
 
 Name:             R-%{packname}
-Version:          1.66.0
-Release:          3%{dist}
+Version:          1.10.0
+Release:          2%{?dist}
 Summary:          Tools for parsing Affymetrix data files
 Summary(fr):      Outils d'analyse de fichier de données de puces affymetrix
+
+Group:            Applications/Engineering
 License:          LGPLv2+
-URL:              http://bioconductor.org/packages/release/bioc/html/affyio.html
-Source0:          http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
-Patch0:           affyio-fix-DESCRIPTION-Depends.patch
-BuildRequires:    R-devel >= %{Rversion} tex(latex) zlib-devel R-methods
+URL:              http://bioconductor.org/packages/%{bioc}/bioc/html/affyio.html
+Source0:          http://bioconductor.org/packages/%{bioc}/bioc/src/contrib/%{packname}_%{version}.tar.gz
+BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
+
+Requires(post):   R >= %{Rversion}
+Requires(postun): R
+BuildRequires:    R-devel >= %{Rversion} tetex-latex zlib-devel
 
 %description
 Routines for parsing Affymetrix data files based upon file format 
@@ -24,9 +30,6 @@ CEL ou CDF.
 
 %prep
 %setup -q -c -n %{packname}
-sed -i '/Imports: zlibbioc/d' %{packname}/DESCRIPTION
-sed -i '/import(zlibbioc)/d' %{packname}/NAMESPACE
-%patch0 -p1 -b .fixdep
 
 %build
 
@@ -43,169 +46,32 @@ rm -rf %{buildroot}%{_libdir}/R/library/R.css
 %check
 %{_bindir}/R CMD check %{packname}
 
+%clean
+rm -rf %{buildroot}
+
+%post
+%{_R_make_search_index}
+
+%postun
+%{_R_make_search_index}
+
 %files
+%defattr(-, root, root, -)
 %dir %{_libdir}/R/library/%{packname}
 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
 %doc %{_libdir}/R/library/%{packname}/html
+%doc %{_libdir}/R/library/%{packname}/man/
+%doc %{_libdir}/R/library/%{packname}/latex/
+%doc %{_libdir}/R/library/%{packname}/LICENSE
+%{_libdir}/R/library/%{packname}/CONTENTS
 %{_libdir}/R/library/%{packname}/INDEX
 %{_libdir}/R/library/%{packname}/NAMESPACE
 %{_libdir}/R/library/%{packname}/R/
 %{_libdir}/R/library/%{packname}/Meta
 %{_libdir}/R/library/%{packname}/help
-%{_libdir}/R/library/%{packname}/libs
+%{_libdir}/R/library/%{packname}/libs/affyio.so
 
 %changelog
-* Fri Apr 21 2023 Iñaki Úcar <iucar@fedoraproject.org> - 1.66.0-3
-- R-maint-sig mass rebuild
-
-* Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.66.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
-
-* Tue Aug  2 2022 Tom Callaway <spot@fedoraproject.org> - 1.66.0-1
-- update to 1.66.0
-- R 4.2.1
-
-* Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.62.0-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
-
-* Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.62.0-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
-
-* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.62.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
-
-* Mon Jun  7 2021 Tom Callaway <spot@fedoraproject.org> - 1.62.0-1
-- update to 1.62.0
-
-* Wed Feb  3 2021 Tom Callaway <spot@fedoraproject.org> - 1.60.0-1
-- update to 1.60.0
-
-* Mon Jan 25 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.58.0-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
-
-* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.58.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
-
-* Mon Jun  8 2020 Tom Callaway <spot@fedoraproject.org> - 1.58.0-1
-- rebuild for R 4
-- update to 1.58.0
-
-* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.56.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
-
-* Thu Nov  7 2019 Tom Callaway <spot@fedoraproject.org> - 1.56.0-1
-- update to 1.56.0
-
-* Mon Aug 12 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 1.50.0-5
-- Remove explicit dependencies provided by automatic dependency generator
-
-* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.50.0-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
-
-* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.50.0-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
-
-* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.50.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
-
-* Wed May 16 2018 Tom Callaway <spot@fedoraproject.org> - 1.50.0-1
-- update to 1.50.0
-
-* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.46.0-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
-
-* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.46.0-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
-
-* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.46.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
-
-* Wed May 24 2017 Tom Callaway <spot@fedoraproject.org> - 1.46.0-1
-- update to 1.46.0
-
-* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.0-5
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
-
-* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.0-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
-
-* Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.32.0-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
-
-* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.32.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
-
-* Wed Jul 02 2014 pingou <pingou@pingoured.fr> 1.32.0-1
-- Update to version 1.32.0
-
-* Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.30.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
-
-* Mon Jan 27 2014 pingou <pingou@pingoured.fr> 1.30.0-1
-- Update to version 1.30.0
-
-* Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.28.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
-
-* Sun Apr 07 2013 pingou <pingou@pingoured.fr> 1.28.0-1
-- Update to version 1.28.0
-
-* Thu Apr 04 2013 pingou <pingou@pingoured.fr> 1.26.0-1
-- Update to version 1.26.0
-
-* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.0-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
-
-* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.0-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
-
-* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
-
-* Wed Nov  9 2011 Tom Callaway <spot@fedoraproject.org> 1.22.0-1
-- Update to 1.22.0
-
-* Wed Jun 22 2011 pingou <pingou@pingoured.fr> 1.20.0-1
-- Update to version 1.20.0
-
-* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.18.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
-
-* Tue Oct 26 2010 pingou <pingou@pingoured.fr> 1.18.0-1
-- Update to version 1.18.0
-
-* Tue May 11 2010 pingou <pingou@pingoured.fr> 1.16.0-1
-- Update to version 1.16.0
-- Fix url to a more stable form
-- Remove R on post/postun since there is no post/postun
-
-* Sat Nov 21 2009 pingou <pingou@pingoured.fr> 1.14.0-1
-- Update to 1.14.0
-- Remove %%post and %%postun
-- Adapt %%files to R-2.10.0
-
-* Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.12.0-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
-
-* Wed Apr 29 2009 pingou <pingou@pingoured.fr> - 1.12.0-2
-- version 1.20.0 != 1.12.0
-
-* Wed Apr 29 2009 pingou <pingou@pingoured.fr> - 1.12.0-1
-- Update to Bioconductor 2.4 and R 2.9.0
-- Add requires to R-methods
-
-* Mon Feb 23 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.10.1-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild
-
-* Thu Jan 22 2009 pingou <pingou-at-pingoured.fr> 1.10.1-2
-- Typo on the release number
-
-* Thu Jan 22 2009 pingou <pingou-at-pingoured.fr> 1.10.1-1
-- Update to newest version
-
-* Sun Nov 30 2008 pingou <pingoufc4-at-yahoo.fr> 1.10.0-3
-- Own the folder libs -- #473618
-
 * Thu Nov 20 2008 pingou <pingoufc4-at-yahoo.fr> 1.10.0-2
 - Correct the Source0
 

affyio-fix-DESCRIPTION-Depends.patch

@@ -1,12 +0,0 @@
-diff -up affyio/affyio/DESCRIPTION.fixdep affyio/affyio/DESCRIPTION
---- affyio/affyio/DESCRIPTION.fixdep	2018-05-16 12:06:44.114260296 -0400
-+++ affyio/affyio/DESCRIPTION	2018-05-16 12:07:43.584933281 -0400
-@@ -3,7 +3,7 @@ Version: 1.50.0
- Title: Tools for parsing Affymetrix data files
- Author: Ben Bolstad <bmb@bmbolstad.com>
- Maintainer: Ben Bolstad <bmb@bmbolstad.com>
--Depends: R (>= 2.6.0)
-+Depends: R (>= 2.6.0), methods
- Description: Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.
- License: LGPL (>= 2)
- URL: https://github.com/bmbolstad/affyio

sources

@@ -1 +1 @@
-SHA512 (affyio_1.66.0.tar.gz) = 76d922484368320d2c65b8c0fba7ce4d3a0b56f5db368914d1ff43d29433b5e40a6d5d9db00b9b78638aac0c72e62101f7be24bb1e4e80f9c5e080e252a4a35f
+817059744ef27f492a134fa5b7c888ac  affyio_1.10.0.tar.gz