dist-git conversion

#2781)

.gitignore

@@ -0,0 +1 @@
+affyio_1.8.0.tar.gz

Makefile

@@ -1,21 +0,0 @@
-# Makefile for source rpm: R-affyio
-# $Id$
-NAME := R-affyio
-SPECFILE = $(firstword $(wildcard *.spec))
-
-define find-makefile-common
-for d in common ../common ../../common ; do if [ -f $$d/Makefile.common ] ; then if [ -f $$d/CVS/Root -a -w $$/Makefile.common ] ; then cd $$d ; cvs -Q update ; fi ; echo "$$d/Makefile.common" ; break ; fi ; done
-endef
-
-MAKEFILE_COMMON := $(shell $(find-makefile-common))
-
-ifeq ($(MAKEFILE_COMMON),)
-# attept a checkout
-define checkout-makefile-common
-test -f CVS/Root && { cvs -Q -d $$(cat CVS/Root) checkout common && echo "common/Makefile.common" ; } || { echo "ERROR: I can't figure out how to checkout the 'common' module." ; exit -1 ; } >&2
-endef
-
-MAKEFILE_COMMON := $(shell $(checkout-makefile-common))
-endif
-
-include $(MAKEFILE_COMMON)

R-affyio.spec

@@ -0,0 +1,101 @@
+%define packname  affyio
+%define bioc      2.3
+%define Rversion  2.8.0
+
+Name:             R-%{packname}
+Version:          1.10.0
+Release:          2%{?dist}
+Summary:          Tools for parsing Affymetrix data files
+Summary(fr):      Outils d'analyse de fichier de données de puces affymetrix
+
+Group:            Applications/Engineering
+License:          LGPLv2+
+URL:              http://bioconductor.org/packages/%{bioc}/bioc/html/affyio.html
+Source0:          http://bioconductor.org/packages/%{bioc}/bioc/src/contrib/%{packname}_%{version}.tar.gz
+BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
+
+Requires(post):   R >= %{Rversion}
+Requires(postun): R
+BuildRequires:    R-devel >= %{Rversion} tetex-latex zlib-devel
+
+%description
+Routines for parsing Affymetrix data files based upon file format 
+information. Primary focus is on accessing the CEL and CDF file formats.
+
+%description -l fr
+Scripts pour analyser les fichiers de données issuent de puces affymetrix
+basé sur les informations fournis pas les extensions. Un des premier 
+objectifs est de convertir les données dans des fichiers au format
+CEL ou CDF.
+
+%prep
+%setup -q -c -n %{packname}
+
+%build
+
+%install
+rm -rf %{buildroot}
+
+mkdir -p %{buildroot}%{_libdir}/R/library 
+R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library
+# Clean up in advance of check
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -rf %{buildroot}%{_libdir}/R/library/R.css
+
+
+%check
+%{_bindir}/R CMD check %{packname}
+
+%clean
+rm -rf %{buildroot}
+
+%post
+%{_R_make_search_index}
+
+%postun
+%{_R_make_search_index}
+
+%files
+%defattr(-, root, root, -)
+%dir %{_libdir}/R/library/%{packname}
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/html
+%doc %{_libdir}/R/library/%{packname}/man/
+%doc %{_libdir}/R/library/%{packname}/latex/
+%doc %{_libdir}/R/library/%{packname}/LICENSE
+%{_libdir}/R/library/%{packname}/CONTENTS
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/Meta
+%{_libdir}/R/library/%{packname}/help
+%{_libdir}/R/library/%{packname}/libs/affyio.so
+
+%changelog
+* Thu Nov 20 2008 pingou <pingoufc4-at-yahoo.fr> 1.10.0-2
+- Correct the Source0
+
+* Mon Oct 27 2008 pingou <pingoufc4-at-yahoo.fr> 1.10.0-1
+- Update to version 1.10.0 for R >= 2.8.0
+
+* Fri Sep 05 2008 pingou <pingoufc4-at-yahoo.fr> 1.8.1-1
+- Update to version 1.8.1
+
+* Fri May 02 2008 Pingou <pingoufc4@yahoo.fr> 1.8.0-1
+- Update to bioconductor 2.2
+
+* Tue Feb 19 2008 Fedora Release Engineering <rel-eng@fedoraproject.org> - 1.6.1-3
+- Autorebuild for GCC 4.3
+
+* Sat Feb 09 2008 Pingou <pingoufc4@yahoo.fr> 1.6.1-2
+- Change on the URL
+
+* Mon Oct 08 2007 Pingou <pingoufc4@yahoo.fr> 1.6.1-1
+- Update to bioconductor 2.1 
+
+* Wed Aug 29 2007 Pingou <pingoufc4@yahoo.fr> 1.4.1-2
+- Change in the license tag to fit the guide lines
+
+* Mon Jul 02 2007 Pingou <pingoufc4@yahoo.fr> 1.4.1-1
+- initial package for Fedora
+

sources

@@ -0,0 +1 @@
+817059744ef27f492a134fa5b7c888ac  affyio_1.10.0.tar.gz