R-maint-sig mass rebuild

Signed-off-by: Fedora Release Engineering <releng@fedoraproject.org>

.gitignore

@@ -0,0 +1,15 @@
+affyio_1.16.0.tar.gz
+/affyio_1.18.0.tar.gz
+/affyio_1.20.0.tar.gz
+/affyio_1.22.0.tar.gz
+/affyio_1.26.0.tar.gz
+/affyio_1.28.0.tar.gz
+/affyio_1.30.0.tar.gz
+/affyio_1.32.0.tar.gz
+/affyio_1.46.0.tar.gz
+/affyio_1.50.0.tar.gz
+/affyio_1.56.0.tar.gz
+/affyio_1.58.0.tar.gz
+/affyio_1.60.0.tar.gz
+/affyio_1.62.0.tar.gz
+/affyio_1.66.0.tar.gz

Makefile

@@ -1,21 +0,0 @@
-# Makefile for source rpm: R-affyio
-# $Id$
-NAME := R-affyio
-SPECFILE = $(firstword $(wildcard *.spec))
-
-define find-makefile-common
-for d in common ../common ../../common ; do if [ -f $$d/Makefile.common ] ; then if [ -f $$d/CVS/Root -a -w $$/Makefile.common ] ; then cd $$d ; cvs -Q update ; fi ; echo "$$d/Makefile.common" ; break ; fi ; done
-endef
-
-MAKEFILE_COMMON := $(shell $(find-makefile-common))
-
-ifeq ($(MAKEFILE_COMMON),)
-# attept a checkout
-define checkout-makefile-common
-test -f CVS/Root && { cvs -Q -d $$(cat CVS/Root) checkout common && echo "common/Makefile.common" ; } || { echo "ERROR: I can't figure out how to checkout the 'common' module." ; exit -1 ; } >&2
-endef
-
-MAKEFILE_COMMON := $(shell $(checkout-makefile-common))
-endif
-
-include $(MAKEFILE_COMMON)

R-affyio.spec

@@ -0,0 +1,235 @@
+%define packname  affyio
+%define Rversion  3.4.0
+
+Name:             R-%{packname}
+Version:          1.66.0
+Release:          3%{dist}
+Summary:          Tools for parsing Affymetrix data files
+Summary(fr):      Outils d'analyse de fichier de données de puces affymetrix
+License:          LGPLv2+
+URL:              http://bioconductor.org/packages/release/bioc/html/affyio.html
+Source0:          http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+Patch0:           affyio-fix-DESCRIPTION-Depends.patch
+BuildRequires:    R-devel >= %{Rversion} tex(latex) zlib-devel R-methods
+
+%description
+Routines for parsing Affymetrix data files based upon file format 
+information. Primary focus is on accessing the CEL and CDF file formats.
+
+%description -l fr
+Scripts pour analyser les fichiers de données issuent de puces affymetrix
+basé sur les informations fournis pas les extensions. Un des premier 
+objectifs est de convertir les données dans des fichiers au format
+CEL ou CDF.
+
+%prep
+%setup -q -c -n %{packname}
+sed -i '/Imports: zlibbioc/d' %{packname}/DESCRIPTION
+sed -i '/import(zlibbioc)/d' %{packname}/NAMESPACE
+%patch0 -p1 -b .fixdep
+
+%build
+
+%install
+rm -rf %{buildroot}
+
+mkdir -p %{buildroot}%{_libdir}/R/library 
+R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library
+# Clean up in advance of check
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -rf %{buildroot}%{_libdir}/R/library/R.css
+
+
+%check
+%{_bindir}/R CMD check %{packname}
+
+%files
+%dir %{_libdir}/R/library/%{packname}
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/html
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/Meta
+%{_libdir}/R/library/%{packname}/help
+%{_libdir}/R/library/%{packname}/libs
+
+%changelog
+* Fri Apr 21 2023 Iñaki Úcar <iucar@fedoraproject.org> - 1.66.0-3
+- R-maint-sig mass rebuild
+
+* Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.66.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
+
+* Tue Aug  2 2022 Tom Callaway <spot@fedoraproject.org> - 1.66.0-1
+- update to 1.66.0
+- R 4.2.1
+
+* Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.62.0-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
+
+* Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.62.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
+
+* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.62.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
+
+* Mon Jun  7 2021 Tom Callaway <spot@fedoraproject.org> - 1.62.0-1
+- update to 1.62.0
+
+* Wed Feb  3 2021 Tom Callaway <spot@fedoraproject.org> - 1.60.0-1
+- update to 1.60.0
+
+* Mon Jan 25 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.58.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
+
+* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.58.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
+
+* Mon Jun  8 2020 Tom Callaway <spot@fedoraproject.org> - 1.58.0-1
+- rebuild for R 4
+- update to 1.58.0
+
+* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.56.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
+
+* Thu Nov  7 2019 Tom Callaway <spot@fedoraproject.org> - 1.56.0-1
+- update to 1.56.0
+
+* Mon Aug 12 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 1.50.0-5
+- Remove explicit dependencies provided by automatic dependency generator
+
+* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.50.0-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
+
+* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.50.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
+
+* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.50.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
+
+* Wed May 16 2018 Tom Callaway <spot@fedoraproject.org> - 1.50.0-1
+- update to 1.50.0
+
+* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.46.0-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
+
+* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.46.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
+
+* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.46.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
+
+* Wed May 24 2017 Tom Callaway <spot@fedoraproject.org> - 1.46.0-1
+- update to 1.46.0
+
+* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.0-5
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
+
+* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.0-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
+
+* Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.32.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
+
+* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.32.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
+
+* Wed Jul 02 2014 pingou <pingou@pingoured.fr> 1.32.0-1
+- Update to version 1.32.0
+
+* Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.30.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
+
+* Mon Jan 27 2014 pingou <pingou@pingoured.fr> 1.30.0-1
+- Update to version 1.30.0
+
+* Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.28.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
+
+* Sun Apr 07 2013 pingou <pingou@pingoured.fr> 1.28.0-1
+- Update to version 1.28.0
+
+* Thu Apr 04 2013 pingou <pingou@pingoured.fr> 1.26.0-1
+- Update to version 1.26.0
+
+* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.0-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
+
+* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
+
+* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
+
+* Wed Nov  9 2011 Tom Callaway <spot@fedoraproject.org> 1.22.0-1
+- Update to 1.22.0
+
+* Wed Jun 22 2011 pingou <pingou@pingoured.fr> 1.20.0-1
+- Update to version 1.20.0
+
+* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.18.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
+
+* Tue Oct 26 2010 pingou <pingou@pingoured.fr> 1.18.0-1
+- Update to version 1.18.0
+
+* Tue May 11 2010 pingou <pingou@pingoured.fr> 1.16.0-1
+- Update to version 1.16.0
+- Fix url to a more stable form
+- Remove R on post/postun since there is no post/postun
+
+* Sat Nov 21 2009 pingou <pingou@pingoured.fr> 1.14.0-1
+- Update to 1.14.0
+- Remove %%post and %%postun
+- Adapt %%files to R-2.10.0
+
+* Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.12.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
+
+* Wed Apr 29 2009 pingou <pingou@pingoured.fr> - 1.12.0-2
+- version 1.20.0 != 1.12.0
+
+* Wed Apr 29 2009 pingou <pingou@pingoured.fr> - 1.12.0-1
+- Update to Bioconductor 2.4 and R 2.9.0
+- Add requires to R-methods
+
+* Mon Feb 23 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.10.1-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild
+
+* Thu Jan 22 2009 pingou <pingou-at-pingoured.fr> 1.10.1-2
+- Typo on the release number
+
+* Thu Jan 22 2009 pingou <pingou-at-pingoured.fr> 1.10.1-1
+- Update to newest version
+
+* Sun Nov 30 2008 pingou <pingoufc4-at-yahoo.fr> 1.10.0-3
+- Own the folder libs -- #473618
+
+* Thu Nov 20 2008 pingou <pingoufc4-at-yahoo.fr> 1.10.0-2
+- Correct the Source0
+
+* Mon Oct 27 2008 pingou <pingoufc4-at-yahoo.fr> 1.10.0-1
+- Update to version 1.10.0 for R >= 2.8.0
+
+* Fri Sep 05 2008 pingou <pingoufc4-at-yahoo.fr> 1.8.1-1
+- Update to version 1.8.1
+
+* Fri May 02 2008 Pingou <pingoufc4@yahoo.fr> 1.8.0-1
+- Update to bioconductor 2.2
+
+* Tue Feb 19 2008 Fedora Release Engineering <rel-eng@fedoraproject.org> - 1.6.1-3
+- Autorebuild for GCC 4.3
+
+* Sat Feb 09 2008 Pingou <pingoufc4@yahoo.fr> 1.6.1-2
+- Change on the URL
+
+* Mon Oct 08 2007 Pingou <pingoufc4@yahoo.fr> 1.6.1-1
+- Update to bioconductor 2.1 
+
+* Wed Aug 29 2007 Pingou <pingoufc4@yahoo.fr> 1.4.1-2
+- Change in the license tag to fit the guide lines
+
+* Mon Jul 02 2007 Pingou <pingoufc4@yahoo.fr> 1.4.1-1
+- initial package for Fedora
+

affyio-fix-DESCRIPTION-Depends.patch

@@ -0,0 +1,12 @@
+diff -up affyio/affyio/DESCRIPTION.fixdep affyio/affyio/DESCRIPTION
+--- affyio/affyio/DESCRIPTION.fixdep	2018-05-16 12:06:44.114260296 -0400
++++ affyio/affyio/DESCRIPTION	2018-05-16 12:07:43.584933281 -0400
+@@ -3,7 +3,7 @@ Version: 1.50.0
+ Title: Tools for parsing Affymetrix data files
+ Author: Ben Bolstad <bmb@bmbolstad.com>
+ Maintainer: Ben Bolstad <bmb@bmbolstad.com>
+-Depends: R (>= 2.6.0)
++Depends: R (>= 2.6.0), methods
+ Description: Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.
+ License: LGPL (>= 2)
+ URL: https://github.com/bmbolstad/affyio

sources

@@ -0,0 +1 @@
+SHA512 (affyio_1.66.0.tar.gz) = 76d922484368320d2c65b8c0fba7ce4d3a0b56f5db368914d1ff43d29433b5e40a6d5d9db00b9b78638aac0c72e62101f7be24bb1e4e80f9c5e080e252a4a35f