From 7d66843489d29f846149fe4e1a41da3cc7349674 Mon Sep 17 00:00:00 2001 From: Tomas Hrcka Date: Thu, 7 Nov 2019 11:27:51 +0100 Subject: [PATCH] Unretirement request: https://pagure.io/releng/issue/8969 Signed-off-by: Tomas Hrcka --- .gitignore | 10 ++ R-affyio.spec | 195 +++++++++++++++++++++++++++ affyio-fix-DESCRIPTION-Depends.patch | 12 ++ dead.package | 1 - sources | 1 + 5 files changed, 218 insertions(+), 1 deletion(-) create mode 100644 .gitignore create mode 100644 R-affyio.spec create mode 100644 affyio-fix-DESCRIPTION-Depends.patch delete mode 100644 dead.package create mode 100644 sources diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..bde99bb --- /dev/null +++ b/.gitignore @@ -0,0 +1,10 @@ +affyio_1.16.0.tar.gz +/affyio_1.18.0.tar.gz +/affyio_1.20.0.tar.gz +/affyio_1.22.0.tar.gz +/affyio_1.26.0.tar.gz +/affyio_1.28.0.tar.gz +/affyio_1.30.0.tar.gz +/affyio_1.32.0.tar.gz +/affyio_1.46.0.tar.gz +/affyio_1.50.0.tar.gz diff --git a/R-affyio.spec b/R-affyio.spec new file mode 100644 index 0000000..a10aa85 --- /dev/null +++ b/R-affyio.spec @@ -0,0 +1,195 @@ +%define packname affyio +%define Rversion 3.4.0 + +Name: R-%{packname} +Version: 1.50.0 +Release: 5%{dist} +Summary: Tools for parsing Affymetrix data files +Summary(fr): Outils d'analyse de fichier de données de puces affymetrix + +License: LGPLv2+ +URL: http://bioconductor.org/packages/release/bioc/html/affyio.html +Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz +Patch0: affyio-fix-DESCRIPTION-Depends.patch +BuildRequires: R-devel >= %{Rversion} tex(latex) zlib-devel R-methods + +%description +Routines for parsing Affymetrix data files based upon file format +information. Primary focus is on accessing the CEL and CDF file formats. + +%description -l fr +Scripts pour analyser les fichiers de données issuent de puces affymetrix +basé sur les informations fournis pas les extensions. Un des premier +objectifs est de convertir les données dans des fichiers au format +CEL ou CDF. + +%prep +%setup -q -c -n %{packname} +sed -i '/Imports: zlibbioc/d' %{packname}/DESCRIPTION +sed -i '/import(zlibbioc)/d' %{packname}/NAMESPACE +%patch0 -p1 -b .fixdep + +%build + +%install +rm -rf %{buildroot} + +mkdir -p %{buildroot}%{_libdir}/R/library +R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library +# Clean up in advance of check +test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) +rm -rf %{buildroot}%{_libdir}/R/library/R.css + + +%check +%{_bindir}/R CMD check %{packname} + +%files +%dir %{_libdir}/R/library/%{packname} +%doc %{_libdir}/R/library/%{packname}/DESCRIPTION +%doc %{_libdir}/R/library/%{packname}/html +%{_libdir}/R/library/%{packname}/INDEX +%{_libdir}/R/library/%{packname}/NAMESPACE +%{_libdir}/R/library/%{packname}/R/ +%{_libdir}/R/library/%{packname}/Meta +%{_libdir}/R/library/%{packname}/help +%{_libdir}/R/library/%{packname}/libs + +%changelog +* Mon Aug 12 2019 Elliott Sales de Andrade - 1.50.0-5 +- Remove explicit dependencies provided by automatic dependency generator + +* Wed Jul 24 2019 Fedora Release Engineering - 1.50.0-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild + +* Thu Jan 31 2019 Fedora Release Engineering - 1.50.0-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild + +* Thu Jul 12 2018 Fedora Release Engineering - 1.50.0-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild + +* Wed May 16 2018 Tom Callaway - 1.50.0-1 +- update to 1.50.0 + +* Wed Feb 07 2018 Fedora Release Engineering - 1.46.0-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild + +* Wed Aug 02 2017 Fedora Release Engineering - 1.46.0-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild + +* Wed Jul 26 2017 Fedora Release Engineering - 1.46.0-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild + +* Wed May 24 2017 Tom Callaway - 1.46.0-1 +- update to 1.46.0 + +* Fri Feb 10 2017 Fedora Release Engineering - 1.32.0-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild + +* Wed Feb 03 2016 Fedora Release Engineering - 1.32.0-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild + +* Tue Jun 16 2015 Fedora Release Engineering - 1.32.0-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild + +* Fri Aug 15 2014 Fedora Release Engineering - 1.32.0-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild + +* Wed Jul 02 2014 pingou 1.32.0-1 +- Update to version 1.32.0 + +* Fri Jun 06 2014 Fedora Release Engineering - 1.30.0-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild + +* Mon Jan 27 2014 pingou 1.30.0-1 +- Update to version 1.30.0 + +* Fri Aug 02 2013 Fedora Release Engineering - 1.28.0-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild + +* Sun Apr 07 2013 pingou 1.28.0-1 +- Update to version 1.28.0 + +* Thu Apr 04 2013 pingou 1.26.0-1 +- Update to version 1.26.0 + +* Wed Feb 13 2013 Fedora Release Engineering - 1.22.0-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild + +* Wed Jul 18 2012 Fedora Release Engineering - 1.22.0-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild + +* Thu Jan 12 2012 Fedora Release Engineering - 1.22.0-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild + +* Wed Nov 9 2011 Tom Callaway 1.22.0-1 +- Update to 1.22.0 + +* Wed Jun 22 2011 pingou 1.20.0-1 +- Update to version 1.20.0 + +* Mon Feb 07 2011 Fedora Release Engineering - 1.18.0-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild + +* Tue Oct 26 2010 pingou 1.18.0-1 +- Update to version 1.18.0 + +* Tue May 11 2010 pingou 1.16.0-1 +- Update to version 1.16.0 +- Fix url to a more stable form +- Remove R on post/postun since there is no post/postun + +* Sat Nov 21 2009 pingou 1.14.0-1 +- Update to 1.14.0 +- Remove %%post and %%postun +- Adapt %%files to R-2.10.0 + +* Fri Jul 24 2009 Fedora Release Engineering - 1.12.0-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild + +* Wed Apr 29 2009 pingou - 1.12.0-2 +- version 1.20.0 != 1.12.0 + +* Wed Apr 29 2009 pingou - 1.12.0-1 +- Update to Bioconductor 2.4 and R 2.9.0 +- Add requires to R-methods + +* Mon Feb 23 2009 Fedora Release Engineering - 1.10.1-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild + +* Thu Jan 22 2009 pingou 1.10.1-2 +- Typo on the release number + +* Thu Jan 22 2009 pingou 1.10.1-1 +- Update to newest version + +* Sun Nov 30 2008 pingou 1.10.0-3 +- Own the folder libs -- #473618 + +* Thu Nov 20 2008 pingou 1.10.0-2 +- Correct the Source0 + +* Mon Oct 27 2008 pingou 1.10.0-1 +- Update to version 1.10.0 for R >= 2.8.0 + +* Fri Sep 05 2008 pingou 1.8.1-1 +- Update to version 1.8.1 + +* Fri May 02 2008 Pingou 1.8.0-1 +- Update to bioconductor 2.2 + +* Tue Feb 19 2008 Fedora Release Engineering - 1.6.1-3 +- Autorebuild for GCC 4.3 + +* Sat Feb 09 2008 Pingou 1.6.1-2 +- Change on the URL + +* Mon Oct 08 2007 Pingou 1.6.1-1 +- Update to bioconductor 2.1 + +* Wed Aug 29 2007 Pingou 1.4.1-2 +- Change in the license tag to fit the guide lines + +* Mon Jul 02 2007 Pingou 1.4.1-1 +- initial package for Fedora + diff --git a/affyio-fix-DESCRIPTION-Depends.patch b/affyio-fix-DESCRIPTION-Depends.patch new file mode 100644 index 0000000..f642493 --- /dev/null +++ b/affyio-fix-DESCRIPTION-Depends.patch @@ -0,0 +1,12 @@ +diff -up affyio/affyio/DESCRIPTION.fixdep affyio/affyio/DESCRIPTION +--- affyio/affyio/DESCRIPTION.fixdep 2018-05-16 12:06:44.114260296 -0400 ++++ affyio/affyio/DESCRIPTION 2018-05-16 12:07:43.584933281 -0400 +@@ -3,7 +3,7 @@ Version: 1.50.0 + Title: Tools for parsing Affymetrix data files + Author: Ben Bolstad + Maintainer: Ben Bolstad +-Depends: R (>= 2.6.0) ++Depends: R (>= 2.6.0), methods + Description: Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats. + License: LGPL (>= 2) + URL: https://github.com/bmbolstad/affyio diff --git a/dead.package b/dead.package deleted file mode 100644 index 5204a84..0000000 --- a/dead.package +++ /dev/null @@ -1 +0,0 @@ -Orphaned for 6+ weeks diff --git a/sources b/sources new file mode 100644 index 0000000..e558e8b --- /dev/null +++ b/sources @@ -0,0 +1 @@ +SHA512 (affyio_1.50.0.tar.gz) = 4e1875fa1e01ba27978438ba1a1985f0fe3a551b8cf92fe4ec38b72c21ac5e9b29061de136aa6d6476ddd0a1ea56606d473b6e4cab41d5be86de3e51baf3142a